Wall clock time and date at job start Thu Apr 9 2020 11:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47967 * 111.00177 * 2 1 4 4 C 1.53934 * 86.18229 * 222.42116 * 3 2 1 5 5 N 1.46499 * 113.73431 * 269.25860 * 4 3 2 6 6 S 1.65596 * 120.00003 * 213.10323 * 5 4 3 7 7 O 1.42101 * 106.40490 * 178.53788 * 6 5 4 8 8 O 1.42100 * 106.40192 * 311.45784 * 6 5 4 9 9 C 1.76206 * 107.22130 * 64.99579 * 6 5 4 10 10 H 1.08002 * 119.99703 * 0.02562 * 9 6 5 11 11 C 1.37872 * 120.00221 * 179.97438 * 9 6 5 12 12 N 1.31514 * 120.00163 * 0.02562 * 11 9 6 13 13 Si 1.86797 * 119.99875 * 179.97438 * 11 9 6 14 14 H 1.48494 * 109.47244 * 60.00445 * 13 11 9 15 15 H 1.48503 * 109.47128 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47483 * 299.99996 * 13 11 9 17 17 C 1.48193 * 111.06841 * 260.57249 * 2 1 3 18 18 H 1.08997 * 109.47696 * 59.99665 * 1 2 3 19 19 H 1.09003 * 109.47413 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.46915 * 299.99698 * 1 2 3 21 21 H 1.09001 * 113.75575 * 108.09971 * 3 2 1 22 22 H 1.08994 * 113.85516 * 336.75365 * 3 2 1 23 23 H 1.09002 * 113.73279 * 138.08098 * 4 3 2 24 24 H 0.97002 * 120.00187 * 33.10098 * 5 4 3 25 25 H 0.96998 * 120.00139 * 179.97438 * 12 11 9 26 26 H 1.09000 * 113.75997 * 23.23547 * 17 2 1 27 27 H 1.09002 * 113.81982 * 251.81037 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0210 0.8793 -1.0361 5 7 4.2639 0.3787 -0.4438 6 16 5.6989 0.5664 -1.2486 7 8 6.7047 0.0156 -0.4094 8 8 5.4722 0.1274 -2.5810 9 6 6.0218 2.2960 -1.3428 10 1 5.3255 2.9996 -0.9110 11 6 7.1639 2.7512 -1.9669 12 7 8.0120 1.8944 -2.4924 13 14 7.5057 4.5848 -2.0674 14 1 7.5981 5.1470 -0.6961 15 1 8.7872 4.8110 -2.7829 16 1 6.4035 5.2543 -2.8037 17 6 2.0017 -0.2265 -1.3642 18 1 -0.3634 0.5139 -0.8899 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 2.4460 1.6802 0.9483 22 1 1.3022 2.1211 -0.3934 23 1 3.1920 1.5760 -1.8568 24 1 4.2463 -0.0628 0.4197 25 1 8.8153 2.2146 -2.9318 26 1 1.3041 0.0406 -2.1580 27 1 2.4504 -1.2100 -1.5039 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306625298.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:21 Heat of formation + Delta-G solvation = -56.759097 kcal Electronic energy + Delta-G solvation = -13527.659751 eV Core-core repulsion = 11027.060145 eV Total energy + Delta-G solvation = -2500.599606 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.067 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.65248 -35.16037 -33.91905 -33.26943 -32.93316 -28.81031 -26.13990 -25.89266 -23.49308 -19.61541 -19.05856 -17.47773 -16.32658 -15.77837 -15.32988 -14.76640 -14.61023 -14.21896 -13.95614 -13.28089 -12.68826 -12.04402 -11.92020 -11.75441 -11.29804 -11.19463 -11.07802 -10.85839 -10.61771 -10.26121 -10.16309 -10.07607 -9.22852 -9.01049 -8.70290 -8.49337 -6.68739 -5.30997 2.35056 3.09071 3.13734 3.19099 4.03866 4.10321 4.64876 4.71673 4.81211 5.10701 5.18118 5.35481 5.54270 5.61730 5.80641 5.82584 5.86040 5.99535 6.12750 6.41030 6.59600 6.89894 7.15407 7.33685 7.93933 8.01099 8.89989 10.25470 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.043698 B = 0.009438 C = 0.008415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.613513 B = 2965.896538 C = 3326.435420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.484 5.484 3 C -0.012 4.012 4 C 0.142 3.858 5 N -1.110 6.110 6 S 2.715 3.285 7 O -1.006 7.006 8 O -1.006 7.006 9 C -1.022 5.022 10 H 0.102 0.898 11 C 0.133 3.867 12 N -0.845 5.845 13 Si 0.921 3.079 14 H -0.264 1.264 15 H -0.277 1.277 16 H -0.264 1.264 17 C -0.017 4.017 18 H 0.033 0.967 19 H 0.066 0.934 20 H 0.064 0.936 21 H 0.095 0.905 22 H 0.075 0.925 23 H 0.105 0.895 24 H 0.407 0.593 25 H 0.291 0.709 26 H 0.075 0.925 27 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.512 1.162 2.795 11.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.207 5.207 3 C -0.143 4.143 4 C 0.031 3.969 5 N -0.862 5.862 6 S 2.814 3.186 7 O -0.996 6.996 8 O -0.996 6.996 9 C -1.155 5.155 10 H 0.120 0.880 11 C -0.085 4.085 12 N -0.475 5.475 13 Si 0.745 3.255 14 H -0.189 1.189 15 H -0.202 1.202 16 H -0.189 1.189 17 C -0.147 4.147 18 H 0.051 0.949 19 H 0.085 0.915 20 H 0.083 0.917 21 H 0.113 0.887 22 H 0.093 0.907 23 H 0.123 0.877 24 H 0.238 0.762 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.656 0.008 2.715 10.996 hybrid contribution -0.434 1.909 -0.173 1.965 sum -11.089 1.918 2.541 11.537 Atomic orbital electron populations 1.22849 0.90373 1.02044 1.00715 1.68514 1.08350 1.18647 1.25166 1.24444 0.97148 0.91316 1.01342 1.21760 0.84880 0.94815 0.95447 1.55781 1.21869 1.74183 1.34380 1.00454 0.69518 0.76516 0.72076 1.93378 1.55694 1.81336 1.69204 1.93364 1.84624 1.83770 1.37813 1.30554 1.16218 1.18365 1.50371 0.87985 1.24742 0.93040 1.00888 0.89853 1.69890 1.10944 1.36488 1.30152 0.86196 0.78221 0.81827 0.79265 1.18887 1.20174 1.18908 1.24640 0.97454 1.02236 0.90401 0.94877 0.91484 0.91689 0.88712 0.90688 0.87670 0.76157 0.89840 0.90690 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.12 9.65 60.06 0.58 0.46 15 2 N -0.48 -6.77 6.55 -246.52 -1.62 -8.39 15 3 C -0.01 -0.16 7.77 -2.76 -0.02 -0.18 15 4 C 0.14 2.41 4.52 -69.62 -0.31 2.09 15 5 N -1.11 -22.16 5.80 -5.89 -0.03 -22.19 15 6 S 2.71 71.44 4.97 -107.50 -0.53 70.90 15 7 O -1.01 -29.59 18.02 -57.17 -1.03 -30.62 15 8 O -1.01 -29.06 17.78 -57.17 -1.02 -30.08 15 9 C -1.02 -27.69 9.72 30.60 0.30 -27.40 15 10 H 0.10 2.50 7.81 -52.49 -0.41 2.09 15 11 C 0.13 3.68 5.46 -17.82 -0.10 3.58 15 12 N -0.85 -24.79 13.19 55.43 0.73 -24.06 15 13 Si 0.92 20.37 29.54 -169.99 -5.02 15.35 15 14 H -0.26 -5.67 7.11 56.52 0.40 -5.26 15 15 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 16 H -0.26 -5.61 7.11 56.52 0.40 -5.21 15 17 C -0.02 -0.25 7.79 -2.63 -0.02 -0.27 15 18 H 0.03 0.33 7.63 -51.93 -0.40 -0.07 15 19 H 0.07 0.69 8.14 -51.93 -0.42 0.27 15 20 H 0.06 0.64 8.14 -51.93 -0.42 0.22 15 21 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 22 H 0.07 0.86 7.93 -51.93 -0.41 0.45 15 23 H 0.11 1.82 8.06 -51.93 -0.42 1.40 15 24 H 0.41 7.39 8.94 -34.47 -0.31 7.08 15 25 H 0.29 7.69 8.31 -40.82 -0.34 7.35 15 26 H 0.07 0.95 7.63 -51.93 -0.40 0.55 15 27 H 0.09 1.49 8.14 -51.93 -0.42 1.07 15 LS Contribution 250.95 15.07 3.78 3.78 Total: -1.00 -34.22 250.95 -7.48 -41.70 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -3.17 Total: 5.32 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 0.42 Total: -21.71 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.92 Total: -54.64 kcal Atomic # 8 Polarization: -58.65 SS G_CDS: -2.05 Total: -60.70 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 71.44 SS G_CDS: -0.53 Total: 70.90 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -34.22 -7.48 -41.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306625298.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.059 kcal (2) G-P(sol) polarization free energy of solvation -34.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds