Wall clock time and date at job start Thu Apr 9 2020 11:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38261 * 119.99957 * 2 1 4 4 C 1.38208 * 119.99940 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.00415 * 359.97438 * 4 3 2 6 6 C 1.38210 * 119.99454 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99794 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47586 * 217.26402 * 7 6 5 9 9 C 1.53007 * 109.47098 * 97.26532 * 7 6 5 10 10 N 1.46505 * 109.47326 * 337.26754 * 7 6 5 11 11 C 1.36939 * 119.99709 * 274.30875 * 10 7 6 12 12 H 1.07997 * 120.00041 * 359.97438 * 11 10 7 13 13 C 1.38812 * 119.99758 * 179.97438 * 11 10 7 14 14 N 1.31616 * 119.99704 * 179.72653 * 13 11 10 15 15 Si 1.86800 * 120.00146 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47359 * 89.99742 * 15 13 11 17 17 H 1.48503 * 109.47190 * 209.99848 * 15 13 11 18 18 H 1.48506 * 109.47009 * 329.99669 * 15 13 11 19 19 C 1.38213 * 120.00371 * 180.23738 * 2 1 3 20 20 C 1.50706 * 119.99609 * 0.04353 * 19 2 1 21 21 H 1.08993 * 109.47084 * 89.99480 * 1 2 3 22 22 H 1.08997 * 109.46801 * 209.99959 * 1 2 3 23 23 H 1.09003 * 109.46639 * 329.99805 * 1 2 3 24 24 H 1.08000 * 119.99941 * 0.02562 * 3 2 1 25 25 H 1.08010 * 119.99885 * 179.97438 * 4 3 2 26 26 H 1.07996 * 120.00453 * 179.97438 * 5 4 3 27 27 H 1.09007 * 109.46859 * 180.02562 * 9 7 6 28 28 H 1.08999 * 109.47228 * 299.99516 * 9 7 6 29 29 H 1.09000 * 109.47122 * 60.00380 * 9 7 6 30 30 H 0.96997 * 119.99819 * 94.30440 * 10 7 6 31 31 H 0.97007 * 119.99820 * 180.02562 * 14 13 11 32 32 H 1.09003 * 109.46399 * 270.24935 * 20 19 2 33 33 H 1.08997 * 109.47376 * 30.25122 * 20 19 2 34 34 H 1.09003 * 109.46646 * 150.25465 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2718 0.0001 0.0016 6 6 3.5807 -1.1968 0.0016 7 6 4.3342 -2.5019 0.0022 8 1 3.8079 -3.2257 -0.6201 9 6 4.4307 -3.0345 1.4333 10 7 5.6819 -2.2880 -0.5311 11 6 5.8981 -2.3304 -1.8826 12 1 5.0752 -2.5218 -2.5554 13 6 7.1749 -2.1272 -2.3880 14 7 7.3836 -2.1732 -3.6866 15 14 8.5983 -1.7967 -1.2243 16 1 9.2270 -3.0838 -0.8331 17 1 9.6041 -0.9406 -1.9031 18 1 8.0953 -1.1027 -0.0115 19 6 2.1982 -1.1969 -0.0050 20 6 1.4447 -2.5020 -0.0114 21 1 -0.3633 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.6583 2.1327 0.0004 25 1 4.1205 2.1328 0.0001 26 1 5.3518 0.0001 0.0016 27 1 4.9761 -3.9783 1.4338 28 1 4.9571 -2.3108 2.0556 29 1 3.4280 -3.1937 1.8301 30 1 6.4210 -2.1164 0.0732 31 1 8.2759 -2.0316 -4.0398 32 1 1.2585 -2.8190 1.0148 33 1 0.4946 -2.3705 -0.5291 34 1 2.0361 -3.2605 -0.5243 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306790337.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:27 Heat of formation + Delta-G solvation = 6.890697 kcal Electronic energy + Delta-G solvation = -14840.153371 eV Core-core repulsion = 12543.961976 eV Total energy + Delta-G solvation = -2296.191395 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.69722 -37.36371 -34.43573 -34.11440 -32.38197 -30.37400 -28.30020 -27.05055 -25.47901 -23.98846 -21.60482 -20.81848 -19.69541 -17.11904 -17.06212 -16.28761 -15.86741 -15.19982 -15.07861 -14.86448 -14.34926 -14.10959 -13.72171 -13.61410 -13.38555 -13.07997 -12.91009 -12.76653 -12.68897 -12.47153 -12.24171 -11.93154 -11.83184 -11.67420 -11.56203 -10.96178 -9.44978 -9.29821 -9.22673 -8.02490 -5.36100 0.59243 0.63090 1.35356 1.38716 1.45703 2.47007 2.95014 3.28436 3.60062 4.00239 4.08554 4.16369 4.32756 4.40014 4.46207 4.56029 4.59290 4.79936 4.85748 4.91188 4.92646 5.00245 5.09267 5.12403 5.21094 5.28442 5.43995 5.47913 5.73140 5.75607 5.82416 5.98190 6.23155 6.31810 7.07276 7.82464 8.02640 9.19526 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.034310 B = 0.008686 C = 0.008157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.903756 B = 3222.659459 C = 3431.928281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.101 4.101 3 C -0.134 4.134 4 C -0.140 4.140 5 C -0.122 4.122 6 C -0.100 4.100 7 C 0.201 3.799 8 H 0.060 0.940 9 C -0.142 4.142 10 N -0.745 5.745 11 C -0.221 4.221 12 H 0.051 0.949 13 C -0.063 4.063 14 N -0.985 5.985 15 Si 0.953 3.047 16 H -0.276 1.276 17 H -0.298 1.298 18 H -0.254 1.254 19 C -0.102 4.102 20 C -0.113 4.113 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.141 0.859 25 H 0.126 0.874 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.365 0.635 31 H 0.257 0.743 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.034 3.263 12.583 18.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.101 4.101 3 C -0.152 4.152 4 C -0.158 4.158 5 C -0.140 4.140 6 C -0.102 4.102 7 C 0.093 3.907 8 H 0.077 0.923 9 C -0.200 4.200 10 N -0.387 5.387 11 C -0.352 4.352 12 H 0.069 0.931 13 C -0.254 4.254 14 N -0.636 5.636 15 Si 0.780 3.220 16 H -0.202 1.202 17 H -0.225 1.225 18 H -0.178 1.178 19 C -0.102 4.102 20 C -0.169 4.169 21 H 0.090 0.910 22 H 0.098 0.902 23 H 0.096 0.904 24 H 0.158 0.842 25 H 0.144 0.856 26 H 0.116 0.884 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.198 0.802 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.082 3.207 12.374 18.291 hybrid contribution 1.582 0.403 -0.155 1.639 sum -11.501 3.610 12.219 17.164 Atomic orbital electron populations 1.20810 0.89008 1.03784 1.02727 1.20115 0.97513 0.92206 1.00266 1.21202 0.93652 0.98407 1.01945 1.21296 0.95292 0.97663 1.01572 1.21002 0.99609 0.93016 1.00376 1.20875 0.93963 0.96904 0.98478 1.19475 0.84178 0.91809 0.95191 0.92268 1.21942 1.03090 1.00869 0.94071 1.42793 1.05894 1.86866 1.03162 1.18941 0.93997 1.38928 0.83320 0.93112 1.25451 1.00079 1.02838 0.97069 1.69888 1.21937 1.59030 1.12774 0.85444 0.79412 0.78119 0.79003 1.20228 1.22460 1.17842 1.19910 0.92579 0.96466 1.01257 1.20887 0.99800 0.93103 1.03139 0.90979 0.90237 0.90355 0.84162 0.85596 0.88355 0.91786 0.92866 0.89808 0.80165 0.93451 0.89425 0.90185 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.06 9.19 71.24 0.65 -1.40 16 2 C -0.10 -2.84 5.88 -19.86 -0.12 -2.95 16 3 C -0.13 -3.88 9.70 22.27 0.22 -3.66 16 4 C -0.14 -4.73 10.05 22.27 0.22 -4.50 16 5 C -0.12 -4.84 9.33 22.27 0.21 -4.63 16 6 C -0.10 -3.77 5.04 -19.87 -0.10 -3.87 16 7 C 0.20 7.83 2.58 44.25 0.11 7.95 16 8 H 0.06 2.41 6.19 -2.39 -0.01 2.39 16 9 C -0.14 -4.25 9.34 71.98 0.67 -3.58 16 10 N -0.74 -35.33 3.59 -326.49 -1.17 -36.51 16 11 C -0.22 -12.83 10.41 84.03 0.87 -11.95 16 12 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 13 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16 14 N -0.99 -64.45 13.97 21.65 0.30 -64.15 16 15 Si 0.95 46.35 27.74 68.60 1.90 48.25 16 16 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 17 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 18 H -0.25 -11.20 6.52 99.48 0.65 -10.55 16 19 C -0.10 -3.21 5.88 -19.87 -0.12 -3.33 16 20 C -0.11 -2.79 8.32 71.24 0.59 -2.20 16 21 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.08 1.31 6.72 -2.39 -0.02 1.29 16 23 H 0.08 1.23 8.09 -2.39 -0.02 1.21 16 24 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 25 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 26 H 0.10 4.30 7.20 -2.91 -0.02 4.28 16 27 H 0.06 1.84 8.14 -2.38 -0.02 1.83 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 2.04 7.53 -2.39 -0.02 2.02 16 30 H 0.36 16.65 5.67 -92.71 -0.53 16.12 16 31 H 0.26 16.00 8.31 -92.70 -0.77 15.23 16 32 H 0.09 1.75 7.98 -2.39 -0.02 1.73 16 33 H 0.08 1.66 6.72 -2.39 -0.02 1.65 16 34 H 0.06 1.60 6.07 -2.39 -0.01 1.59 16 Total: -1.00 -69.69 276.32 5.22 -64.47 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.50 Total: 25.39 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 3.69 Total: -37.46 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -0.87 Total: -100.65 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.90 Total: 48.25 kcal Total: -69.69 5.22 -64.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306790337.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.361 kcal (2) G-P(sol) polarization free energy of solvation -69.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds