Wall clock time and date at job start Thu Apr 9 2020 11:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38241 * 119.99485 * 2 1 4 4 C 1.38238 * 119.99999 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.00092 * 180.02562 * 4 3 2 6 6 C 1.38235 * 119.99783 * 359.97438 * 4 3 2 7 7 C 1.38241 * 120.00218 * 0.02562 * 6 4 3 8 8 C 1.50699 * 120.00160 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.47358 * 19.99633 * 8 7 6 10 10 C 1.53006 * 109.46866 * 260.00038 * 8 7 6 11 11 N 1.46496 * 109.47248 * 140.00274 * 8 7 6 12 12 C 1.36936 * 119.99928 * 204.99923 * 11 8 7 13 13 H 1.07993 * 120.00240 * 0.02562 * 12 11 8 14 14 C 1.38814 * 119.99737 * 179.97438 * 12 11 8 15 15 N 1.31613 * 120.00292 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99784 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47218 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47201 * 120.00260 * 16 14 12 19 19 H 1.48500 * 109.47146 * 240.00125 * 16 14 12 20 20 C 1.38231 * 120.00492 * 180.23550 * 2 1 3 21 21 H 1.09002 * 109.47220 * 90.00395 * 1 2 3 22 22 H 1.09003 * 109.46811 * 209.99806 * 1 2 3 23 23 H 1.09001 * 109.47464 * 329.99606 * 1 2 3 24 24 H 1.08003 * 120.00194 * 0.02562 * 3 2 1 25 25 H 1.09003 * 109.47344 * 269.97664 * 5 4 3 26 26 H 1.08998 * 109.47472 * 29.98345 * 5 4 3 27 27 H 1.09004 * 109.46984 * 149.97657 * 5 4 3 28 28 H 1.07995 * 120.00075 * 180.02562 * 6 4 3 29 29 H 1.09001 * 109.47002 * 179.97438 * 10 8 7 30 30 H 1.08993 * 109.46955 * 300.00219 * 10 8 7 31 31 H 1.09000 * 109.47050 * 60.00048 * 10 8 7 32 32 H 0.97003 * 119.99991 * 24.99332 * 11 8 7 33 33 H 0.97001 * 120.00319 * 179.97438 * 15 14 12 34 34 H 1.08002 * 120.00019 * 0.04199 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1973 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.3338 2.5025 0.0011 6 6 4.2717 0.0003 0.0016 7 6 3.5806 -1.1970 0.0016 8 6 4.3342 -2.5020 0.0022 9 1 5.3521 -2.3337 0.3540 10 6 4.3728 -3.0692 -1.4183 11 7 3.6618 -3.4538 0.8899 12 6 4.3708 -4.4778 1.4589 13 1 5.4258 -4.5835 1.2537 14 6 3.7337 -5.3794 2.3005 15 7 2.4481 -5.2503 2.5511 16 14 4.7011 -6.7759 3.0774 17 1 6.1178 -6.7006 2.6388 18 1 4.6335 -6.6621 4.5565 19 1 4.1208 -8.0756 2.6539 20 6 2.1983 -1.1970 -0.0049 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5139 24 1 1.6580 2.1326 0.0004 25 1 4.5163 2.8172 -1.0264 26 1 3.7444 3.2621 0.5146 27 1 5.2859 2.3722 0.5157 28 1 5.3517 0.0003 0.0024 29 1 4.9183 -4.0129 -1.4180 30 1 3.3550 -3.2375 -1.7701 31 1 4.8731 -2.3610 -2.0788 32 1 2.7142 -3.3586 1.0746 33 1 2.0028 -5.8805 3.1389 34 1 1.6583 -2.1324 -0.0095 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307155221.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:42 Heat of formation + Delta-G solvation = 15.516028 kcal Electronic energy + Delta-G solvation = -14460.076795 eV Core-core repulsion = 12164.259422 eV Total energy + Delta-G solvation = -2295.817373 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.30269 -35.59804 -33.20591 -32.49190 -30.23416 -28.19062 -26.99220 -26.34637 -24.08129 -22.32768 -20.41552 -19.21040 -17.25638 -15.91173 -15.29816 -14.67260 -14.06418 -13.81254 -13.32828 -13.30616 -13.04049 -12.61997 -12.54499 -12.37630 -12.19730 -11.71712 -11.61480 -11.22082 -10.94923 -10.81883 -10.78927 -10.52703 -10.18947 -9.89378 -9.63781 -8.93934 -8.14826 -8.12026 -6.95112 -5.75256 -3.03597 1.78233 1.82237 3.44402 3.49871 3.52173 4.14288 4.61119 5.05065 5.11190 5.24424 5.48805 5.54220 5.58075 5.67768 5.69576 5.77874 5.82989 5.94888 5.97486 6.00274 6.10851 6.15435 6.38268 6.49401 6.55974 6.62520 6.74449 6.91959 6.95240 7.06586 7.27722 7.48020 7.72252 8.43360 9.54606 10.11575 10.47101 11.47693 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.034324 B = 0.007155 C = 0.006573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.566498 B = 3912.513558 C = 4258.703344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.086 4.086 3 C -0.136 4.136 4 C -0.091 4.091 5 C -0.109 4.109 6 C -0.125 4.125 7 C -0.058 4.058 8 C 0.206 3.794 9 H 0.054 0.946 10 C -0.158 4.158 11 N -0.722 5.722 12 C -0.237 4.237 13 H 0.072 0.928 14 C -0.014 4.014 15 N -0.933 5.933 16 Si 0.907 3.093 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.292 1.292 20 C -0.109 4.109 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.113 0.887 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.116 0.884 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.037 0.963 32 H 0.385 0.615 33 H 0.254 0.746 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.055 12.824 -6.542 14.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.086 4.086 3 C -0.154 4.154 4 C -0.091 4.091 5 C -0.166 4.166 6 C -0.144 4.144 7 C -0.059 4.059 8 C 0.096 3.904 9 H 0.072 0.928 10 C -0.219 4.219 11 N -0.364 5.364 12 C -0.368 4.368 13 H 0.090 0.910 14 C -0.210 4.210 15 N -0.581 5.581 16 Si 0.738 3.262 17 H -0.205 1.205 18 H -0.219 1.219 19 H -0.219 1.219 20 C -0.127 4.127 21 H 0.084 0.916 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.131 0.869 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.134 0.866 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.220 0.780 33 H 0.064 0.936 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.187 12.690 -6.464 14.242 hybrid contribution 0.147 -0.844 0.564 1.025 sum 0.334 11.846 -5.900 13.238 Atomic orbital electron populations 1.20764 0.91649 1.02635 1.01832 1.19855 0.95753 0.93164 0.99812 1.20728 0.93433 0.97055 1.04165 1.19767 0.93780 0.94938 1.00592 1.20728 0.99777 0.94319 1.01745 1.20849 0.99373 0.91443 1.02692 1.20392 0.94063 0.95606 0.95862 1.19215 0.94729 0.85695 0.90770 0.92773 1.22410 1.01124 1.00498 0.97840 1.42538 1.09725 1.30091 1.54052 1.19306 0.93160 1.03266 1.21108 0.91041 1.24737 0.95939 0.99673 1.00642 1.69670 1.08557 1.38772 1.41140 0.86118 0.78946 0.82219 0.78927 1.20547 1.21892 1.21885 1.20929 0.93996 0.97521 1.00275 0.91626 0.91291 0.92047 0.86936 0.91683 0.92025 0.91799 0.86556 0.92482 0.93363 0.94377 0.77992 0.93564 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 36.01 0.36 -1.10 16 2 C -0.09 -1.37 5.88 -104.62 -0.62 -1.99 16 3 C -0.14 -2.00 9.36 -39.58 -0.37 -2.37 16 4 C -0.09 -1.34 5.88 -104.63 -0.62 -1.96 16 5 C -0.11 -1.21 10.01 36.00 0.36 -0.85 16 6 C -0.12 -2.08 9.33 -39.58 -0.37 -2.45 16 7 C -0.06 -1.11 4.95 -104.62 -0.52 -1.63 16 8 C 0.21 4.33 3.09 -69.08 -0.21 4.11 16 9 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 10 C -0.16 -3.01 9.47 37.16 0.35 -2.66 16 11 N -0.72 -18.59 5.07 -54.55 -0.28 -18.87 16 12 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 13 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 14 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 15 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 16 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 C -0.11 -2.03 8.71 -39.58 -0.34 -2.37 16 21 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 23 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 24 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 27 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 28 H 0.12 1.74 8.04 -52.49 -0.42 1.32 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.38 10.44 6.08 -40.82 -0.25 10.19 16 33 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.12 2.45 6.93 -52.49 -0.36 2.09 16 LS Contribution 287.36 15.07 4.33 4.33 Total: -1.00 -30.66 287.36 -7.67 -38.33 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.21 Total: 6.98 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -2.22 Total: -20.59 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.45 Total: -46.62 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.66 -7.67 -38.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307155221.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.844 kcal (2) G-P(sol) polarization free energy of solvation -30.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds