Wall clock time and date at job start Thu Apr 9 2020 11:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38241 * 119.99485 * 2 1 4 4 C 1.38238 * 119.99999 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.00092 * 180.02562 * 4 3 2 6 6 C 1.38235 * 119.99783 * 359.97438 * 4 3 2 7 7 C 1.38241 * 120.00218 * 0.02562 * 6 4 3 8 8 C 1.50699 * 120.00160 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.47358 * 19.99633 * 8 7 6 10 10 C 1.53006 * 109.46866 * 260.00038 * 8 7 6 11 11 N 1.46496 * 109.47248 * 140.00274 * 8 7 6 12 12 C 1.36936 * 119.99928 * 204.99923 * 11 8 7 13 13 H 1.07993 * 120.00240 * 0.02562 * 12 11 8 14 14 C 1.38814 * 119.99737 * 179.97438 * 12 11 8 15 15 N 1.31613 * 120.00292 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99784 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47218 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47201 * 120.00260 * 16 14 12 19 19 H 1.48500 * 109.47146 * 240.00125 * 16 14 12 20 20 C 1.38231 * 120.00492 * 180.23550 * 2 1 3 21 21 H 1.09002 * 109.47220 * 90.00395 * 1 2 3 22 22 H 1.09003 * 109.46811 * 209.99806 * 1 2 3 23 23 H 1.09001 * 109.47464 * 329.99606 * 1 2 3 24 24 H 1.08003 * 120.00194 * 0.02562 * 3 2 1 25 25 H 1.09003 * 109.47344 * 269.97664 * 5 4 3 26 26 H 1.08998 * 109.47472 * 29.98345 * 5 4 3 27 27 H 1.09004 * 109.46984 * 149.97657 * 5 4 3 28 28 H 1.07995 * 120.00075 * 180.02562 * 6 4 3 29 29 H 1.09001 * 109.47002 * 179.97438 * 10 8 7 30 30 H 1.08993 * 109.46955 * 300.00219 * 10 8 7 31 31 H 1.09000 * 109.47050 * 60.00048 * 10 8 7 32 32 H 0.97003 * 119.99991 * 24.99332 * 11 8 7 33 33 H 0.97001 * 120.00319 * 179.97438 * 15 14 12 34 34 H 1.08002 * 120.00019 * 0.04199 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1973 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.3338 2.5025 0.0011 6 6 4.2717 0.0003 0.0016 7 6 3.5806 -1.1970 0.0016 8 6 4.3342 -2.5020 0.0022 9 1 5.3521 -2.3337 0.3540 10 6 4.3728 -3.0692 -1.4183 11 7 3.6618 -3.4538 0.8899 12 6 4.3708 -4.4778 1.4589 13 1 5.4258 -4.5835 1.2537 14 6 3.7337 -5.3794 2.3005 15 7 2.4481 -5.2503 2.5511 16 14 4.7011 -6.7759 3.0774 17 1 6.1178 -6.7006 2.6388 18 1 4.6335 -6.6621 4.5565 19 1 4.1208 -8.0756 2.6539 20 6 2.1983 -1.1970 -0.0049 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5139 24 1 1.6580 2.1326 0.0004 25 1 4.5163 2.8172 -1.0264 26 1 3.7444 3.2621 0.5146 27 1 5.2859 2.3722 0.5157 28 1 5.3517 0.0003 0.0024 29 1 4.9183 -4.0129 -1.4180 30 1 3.3550 -3.2375 -1.7701 31 1 4.8731 -2.3610 -2.0788 32 1 2.7142 -3.3586 1.0746 33 1 2.0028 -5.8805 3.1389 34 1 1.6583 -2.1324 -0.0095 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307155221.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:42 Heat of formation + Delta-G solvation = -1.672290 kcal Electronic energy + Delta-G solvation = -14460.822136 eV Core-core repulsion = 12164.259422 eV Total energy + Delta-G solvation = -2296.562714 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.59761 -37.30371 -34.41575 -34.31113 -31.87520 -29.92947 -28.05605 -27.53521 -26.04375 -23.92604 -21.64677 -20.70811 -19.28019 -17.28009 -16.85663 -16.29900 -15.78607 -15.12512 -14.91256 -14.73384 -14.20956 -13.95601 -13.87278 -13.73918 -13.32804 -13.26704 -12.88856 -12.79117 -12.70941 -12.48690 -12.17336 -12.07285 -11.93715 -11.60983 -11.43244 -11.02285 -9.44368 -9.37264 -9.04113 -7.95414 -5.24401 0.52250 0.53765 1.46050 1.47207 1.57282 2.54833 2.87563 3.38723 3.84016 3.92232 4.00514 4.07452 4.32020 4.44563 4.55485 4.57840 4.69169 4.75194 4.78032 4.83255 4.91432 4.95528 5.03956 5.10448 5.15302 5.32042 5.38968 5.45889 5.48883 5.72485 5.74250 5.86991 6.23225 6.26889 7.32413 8.06974 8.32112 9.28710 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.034324 B = 0.007155 C = 0.006573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.566498 B = 3912.513558 C = 4258.703344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.091 4.091 3 C -0.134 4.134 4 C -0.086 4.086 5 C -0.107 4.107 6 C -0.136 4.136 7 C -0.079 4.079 8 C 0.201 3.799 9 H 0.051 0.949 10 C -0.147 4.147 11 N -0.735 5.735 12 C -0.240 4.240 13 H 0.077 0.923 14 C -0.077 4.077 15 N -0.972 5.972 16 Si 0.975 3.025 17 H -0.265 1.265 18 H -0.294 1.294 19 H -0.293 1.293 20 C -0.136 4.136 21 H 0.081 0.919 22 H 0.055 0.945 23 H 0.084 0.916 24 H 0.146 0.854 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.130 0.870 29 H 0.044 0.956 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.374 0.626 33 H 0.251 0.749 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.856 14.930 -7.049 16.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.091 4.091 3 C -0.152 4.152 4 C -0.086 4.086 5 C -0.163 4.163 6 C -0.155 4.155 7 C -0.080 4.080 8 C 0.093 3.907 9 H 0.069 0.931 10 C -0.207 4.207 11 N -0.377 5.377 12 C -0.372 4.372 13 H 0.095 0.905 14 C -0.269 4.269 15 N -0.622 5.622 16 Si 0.804 3.196 17 H -0.189 1.189 18 H -0.221 1.221 19 H -0.220 1.220 20 C -0.155 4.155 21 H 0.100 0.900 22 H 0.074 0.926 23 H 0.103 0.897 24 H 0.164 0.836 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.148 0.852 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.207 0.793 33 H 0.060 0.940 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.025 14.822 -7.007 16.427 hybrid contribution -0.101 -1.370 0.658 1.524 sum 0.923 13.452 -6.348 14.903 Atomic orbital electron populations 1.20809 0.89748 1.03122 1.03036 1.20185 0.97323 0.92731 0.98818 1.21146 0.93737 0.97702 1.02634 1.20229 0.94192 0.95874 0.98339 1.20801 0.99818 0.92472 1.03245 1.21047 1.00175 0.91308 1.02932 1.20248 0.94216 0.95364 0.98186 1.19380 0.94406 0.86224 0.90703 0.93055 1.22238 1.00777 1.00527 0.97134 1.42743 1.09358 1.30720 1.54833 1.19702 0.93533 1.03571 1.20362 0.90475 1.25579 0.96950 1.02511 1.01898 1.69836 1.10221 1.39888 1.42303 0.85052 0.78265 0.78804 0.77521 1.18912 1.22091 1.21997 1.20855 0.94146 0.97717 1.02763 0.89997 0.92642 0.89695 0.83609 0.89892 0.90252 0.91176 0.85239 0.93682 0.94218 0.91321 0.79313 0.94042 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.73 10.01 71.24 0.71 -2.02 16 2 C -0.09 -2.81 5.88 -19.87 -0.12 -2.93 16 3 C -0.13 -3.57 9.36 22.27 0.21 -3.36 16 4 C -0.09 -2.31 5.88 -19.87 -0.12 -2.42 16 5 C -0.11 -1.94 10.01 71.23 0.71 -1.23 16 6 C -0.14 -4.34 9.33 22.27 0.21 -4.13 16 7 C -0.08 -3.04 4.95 -19.86 -0.10 -3.14 16 8 C 0.20 8.61 3.09 44.25 0.14 8.74 16 9 H 0.05 2.19 7.94 -2.39 -0.02 2.17 16 10 C -0.15 -5.62 9.47 71.98 0.68 -4.94 16 11 N -0.74 -39.17 5.07 -326.51 -1.66 -40.82 16 12 C -0.24 -13.77 9.93 84.03 0.83 -12.94 16 13 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 14 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 15 N -0.97 -61.14 13.06 21.65 0.28 -60.85 16 16 Si 0.97 47.16 29.55 68.60 2.03 49.19 16 17 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 18 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 19 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 20 C -0.14 -5.20 8.71 22.27 0.19 -5.01 16 21 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.05 1.51 8.09 -2.39 -0.02 1.49 16 23 H 0.08 1.68 8.09 -2.39 -0.02 1.66 16 24 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 25 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 27 H 0.07 1.21 8.09 -2.38 -0.02 1.19 16 28 H 0.13 3.66 8.04 -2.91 -0.02 3.63 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.37 21.33 6.08 -92.71 -0.56 20.77 16 33 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.10 4.15 6.93 -2.91 -0.02 4.13 16 Total: -1.00 -66.96 287.36 4.98 -61.98 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.50 Total: 27.98 kcal Atomic # 6 Polarization: -41.29 SS G_CDS: 3.82 Total: -37.46 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -1.37 Total: -101.68 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -66.96 4.98 -61.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307155221.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.306 kcal (2) G-P(sol) polarization free energy of solvation -66.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds