Wall clock time and date at job start Thu Apr 9 2020 11:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38224 * 119.62264 * 2 1 4 4 C 1.38624 * 119.16739 * 180.02562 * 3 2 1 5 5 C 1.50693 * 120.79340 * 179.97438 * 4 3 2 6 6 N 1.46496 * 109.47440 * 89.99715 * 5 4 3 7 7 C 1.34777 * 120.00345 * 180.02562 * 6 5 4 8 8 O 1.21691 * 119.99927 * 359.71664 * 7 6 5 9 9 C 1.46376 * 120.00409 * 180.02562 * 7 6 5 10 10 H 1.08000 * 119.99344 * 359.71922 * 9 7 6 11 11 C 1.40047 * 119.99962 * 179.72389 * 9 7 6 12 12 N 1.30669 * 120.00136 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 119.99668 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47389 * 59.99751 * 13 11 9 15 15 H 1.48501 * 109.47057 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47148 * 299.99960 * 13 11 9 17 17 C 1.38676 * 118.41604 * 0.24660 * 4 3 2 18 18 C 1.38183 * 119.16292 * 359.48504 * 17 4 3 19 19 N 1.31858 * 119.61496 * 179.97438 * 2 1 3 20 20 H 1.09005 * 109.46651 * 90.00144 * 1 2 3 21 21 H 1.08998 * 109.47254 * 209.99876 * 1 2 3 22 22 H 1.08995 * 109.47063 * 330.00415 * 1 2 3 23 23 H 1.08006 * 120.41479 * 359.97137 * 3 2 1 24 24 H 1.08999 * 109.47079 * 329.99001 * 5 4 3 25 25 H 1.09006 * 109.47326 * 209.99534 * 5 4 3 26 26 H 0.97004 * 120.00003 * 359.97438 * 6 5 4 27 27 H 0.96999 * 119.99949 * 180.02562 * 12 11 9 28 28 H 1.08004 * 120.41685 * 179.75657 * 17 4 3 29 29 H 1.08004 * 119.61572 * 180.29552 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 -0.0005 5 6 4.3581 2.4789 -0.0011 6 7 4.6120 2.8968 1.3798 7 6 5.2990 4.0299 1.6256 8 8 5.7129 4.7033 0.7003 9 6 5.5531 4.4472 3.0054 10 1 5.1861 3.8493 3.8265 11 6 6.2720 5.6217 3.2607 12 7 6.7163 6.3447 2.2671 13 14 6.5957 6.1545 5.0216 14 1 7.3704 5.0998 5.7234 15 1 7.3718 7.4205 5.0209 16 1 5.3025 6.3663 5.7202 17 6 4.2266 -0.0343 -0.0063 18 6 3.4766 -1.1948 -0.0005 19 7 2.1586 -1.1463 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5137 23 1 1.6508 2.1373 -0.0005 24 1 3.7856 3.2510 -0.5151 25 1 5.3074 2.3277 -0.5153 26 1 4.2849 2.3583 2.1174 27 1 7.2146 7.1580 2.4439 28 1 5.3056 -0.0806 -0.0109 29 1 3.9754 -2.1528 0.0000 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307263691.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:47 Heat of formation + Delta-G solvation = -15.940593 kcal Electronic energy + Delta-G solvation = -13922.466856 eV Core-core repulsion = 11424.026417 eV Total energy + Delta-G solvation = -2498.440440 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.18604 -37.32819 -34.40455 -32.70672 -32.46626 -31.34192 -27.65202 -27.10444 -25.15863 -22.96143 -20.91731 -19.70924 -17.42255 -16.46307 -16.00959 -15.40788 -15.16864 -14.58297 -14.14603 -13.98046 -13.48284 -13.14721 -12.54020 -12.45648 -12.30817 -11.80344 -11.75378 -11.24519 -11.21041 -10.88007 -10.50497 -10.29522 -9.58597 -9.39715 -8.88186 -8.85235 -7.67056 -7.60178 -6.22399 -4.68491 1.20527 1.32252 3.14064 3.18945 3.20942 3.81729 4.09664 4.35109 4.54225 4.71786 4.85271 5.07637 5.19468 5.25100 5.51689 5.53522 5.56800 5.67862 5.80020 5.96703 6.09153 6.16276 6.31257 6.63463 6.81164 7.39861 7.85225 7.99848 8.04776 8.27516 8.98407 9.45790 10.54982 10.72858 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.047439 B = 0.005653 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.092248 B = 4951.558694 C = 5060.261213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.119 3.881 3 C -0.158 4.158 4 C -0.040 4.040 5 C 0.168 3.832 6 N -0.762 5.762 7 C 0.555 3.445 8 O -0.580 6.580 9 C -0.545 4.545 10 H 0.068 0.932 11 C 0.087 3.913 12 N -0.768 5.768 13 Si 0.909 3.091 14 H -0.268 1.268 15 H -0.280 1.280 16 H -0.268 1.268 17 C -0.165 4.165 18 C 0.097 3.903 19 N -0.491 5.491 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.135 0.865 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.381 0.619 27 H 0.269 0.731 28 H 0.135 0.865 29 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.979 -10.875 -2.075 13.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.018 4.018 3 C -0.178 4.178 4 C -0.048 4.048 5 C 0.043 3.957 6 N -0.419 5.419 7 C 0.359 3.641 8 O -0.462 6.462 9 C -0.581 4.581 10 H 0.086 0.914 11 C -0.133 4.133 12 N -0.396 5.396 13 Si 0.734 3.266 14 H -0.193 1.193 15 H -0.205 1.205 16 H -0.193 1.193 17 C -0.185 4.185 18 C -0.059 4.059 19 N -0.202 5.202 20 H 0.094 0.906 21 H 0.093 0.907 22 H 0.093 0.907 23 H 0.153 0.847 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.213 0.787 27 H 0.080 0.920 28 H 0.153 0.847 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.031 -10.953 -2.847 13.877 hybrid contribution 0.595 0.753 1.191 1.529 sum -7.436 -10.201 -1.657 12.732 Atomic orbital electron populations 1.20684 0.89007 1.03343 1.02857 1.21256 0.96901 0.88337 0.95304 1.21948 0.94366 0.99358 1.02116 1.20657 0.93955 0.96042 0.94164 1.19836 0.97624 0.90217 0.88013 1.46197 1.63001 1.28540 1.04114 1.18260 0.77041 0.78173 0.90642 1.90606 1.54621 1.54568 1.46450 1.20833 1.37436 1.09042 0.90835 0.91423 1.25710 0.93713 0.95588 0.98245 1.70005 1.26203 1.11495 1.31929 0.86408 0.79028 0.78282 0.82884 1.19258 1.20516 1.19252 1.22125 1.01730 0.92797 1.01880 1.22670 0.89385 0.98252 0.95622 1.67471 1.10088 1.29435 1.13209 0.90631 0.90679 0.90695 0.84727 0.92062 0.92007 0.78737 0.91974 0.84664 0.82878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 10.17 36.00 0.37 -0.65 15 2 C 0.12 1.61 6.78 -82.59 -0.56 1.05 15 3 C -0.16 -2.25 9.45 -39.44 -0.37 -2.62 15 4 C -0.04 -0.62 5.29 -104.32 -0.55 -1.17 15 5 C 0.17 3.21 5.85 -5.20 -0.03 3.18 15 6 N -0.76 -17.03 5.54 -62.91 -0.35 -17.38 15 7 C 0.55 15.73 7.75 -12.99 -0.10 15.63 15 8 O -0.58 -18.70 15.02 5.20 0.08 -18.62 15 9 C -0.54 -15.35 9.54 -35.63 -0.34 -15.69 15 10 H 0.07 1.75 7.85 -52.49 -0.41 1.33 15 11 C 0.09 2.43 5.50 -17.37 -0.10 2.34 15 12 N -0.77 -22.95 11.83 55.55 0.66 -22.30 15 13 Si 0.91 20.05 29.56 -169.99 -5.02 15.03 15 14 H -0.27 -5.75 7.11 56.52 0.40 -5.34 15 15 H -0.28 -6.03 7.11 56.52 0.40 -5.62 15 16 H -0.27 -5.74 7.11 56.52 0.40 -5.34 15 17 C -0.16 -2.29 9.82 -39.44 -0.39 -2.68 15 18 C 0.10 1.26 11.18 -17.55 -0.20 1.07 15 19 N -0.49 -6.99 10.27 -9.47 -0.10 -7.09 15 20 H 0.08 0.66 8.14 -51.93 -0.42 0.24 15 21 H 0.07 0.72 8.14 -51.93 -0.42 0.30 15 22 H 0.07 0.65 8.08 -51.93 -0.42 0.23 15 23 H 0.13 1.77 8.06 -52.48 -0.42 1.35 15 24 H 0.06 1.22 8.10 -51.93 -0.42 0.80 15 25 H 0.06 1.23 8.10 -51.93 -0.42 0.81 15 26 H 0.38 7.70 8.44 -40.82 -0.34 7.35 15 27 H 0.27 7.31 8.29 -40.82 -0.34 6.97 15 28 H 0.14 1.71 8.06 -52.48 -0.42 1.29 15 29 H 0.15 1.51 8.06 -52.48 -0.42 1.09 15 LS Contribution 264.19 15.07 3.98 3.98 Total: -1.00 -34.20 264.19 -6.29 -40.48 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -3.27 Total: 5.44 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -2.27 Total: 0.45 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.21 Total: -46.76 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.08 Total: -18.62 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -34.20 -6.29 -40.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307263691.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.543 kcal (2) G-P(sol) polarization free energy of solvation -34.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds