Wall clock time and date at job start Thu Apr 9 2020 11:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38224 * 119.62264 * 2 1 4 4 C 1.38624 * 119.16739 * 180.02562 * 3 2 1 5 5 C 1.50693 * 120.79340 * 179.97438 * 4 3 2 6 6 N 1.46496 * 109.47440 * 89.99715 * 5 4 3 7 7 C 1.34777 * 120.00345 * 180.02562 * 6 5 4 8 8 O 1.21691 * 119.99927 * 359.71664 * 7 6 5 9 9 C 1.46376 * 120.00409 * 180.02562 * 7 6 5 10 10 H 1.08000 * 119.99344 * 359.71922 * 9 7 6 11 11 C 1.40047 * 119.99962 * 179.72389 * 9 7 6 12 12 N 1.30669 * 120.00136 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 119.99668 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47389 * 59.99751 * 13 11 9 15 15 H 1.48501 * 109.47057 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47148 * 299.99960 * 13 11 9 17 17 C 1.38676 * 118.41604 * 0.24660 * 4 3 2 18 18 C 1.38183 * 119.16292 * 359.48504 * 17 4 3 19 19 N 1.31858 * 119.61496 * 179.97438 * 2 1 3 20 20 H 1.09005 * 109.46651 * 90.00144 * 1 2 3 21 21 H 1.08998 * 109.47254 * 209.99876 * 1 2 3 22 22 H 1.08995 * 109.47063 * 330.00415 * 1 2 3 23 23 H 1.08006 * 120.41479 * 359.97137 * 3 2 1 24 24 H 1.08999 * 109.47079 * 329.99001 * 5 4 3 25 25 H 1.09006 * 109.47326 * 209.99534 * 5 4 3 26 26 H 0.97004 * 120.00003 * 359.97438 * 6 5 4 27 27 H 0.96999 * 119.99949 * 180.02562 * 12 11 9 28 28 H 1.08004 * 120.41685 * 179.75657 * 17 4 3 29 29 H 1.08004 * 119.61572 * 180.29552 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 -0.0005 5 6 4.3581 2.4789 -0.0011 6 7 4.6120 2.8968 1.3798 7 6 5.2990 4.0299 1.6256 8 8 5.7129 4.7033 0.7003 9 6 5.5531 4.4472 3.0054 10 1 5.1861 3.8493 3.8265 11 6 6.2720 5.6217 3.2607 12 7 6.7163 6.3447 2.2671 13 14 6.5957 6.1545 5.0216 14 1 7.3704 5.0998 5.7234 15 1 7.3718 7.4205 5.0209 16 1 5.3025 6.3663 5.7202 17 6 4.2266 -0.0343 -0.0063 18 6 3.4766 -1.1948 -0.0005 19 7 2.1586 -1.1463 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5137 23 1 1.6508 2.1373 -0.0005 24 1 3.7856 3.2510 -0.5151 25 1 5.3074 2.3277 -0.5153 26 1 4.2849 2.3583 2.1174 27 1 7.2146 7.1580 2.4439 28 1 5.3056 -0.0806 -0.0109 29 1 3.9754 -2.1528 0.0000 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307263691.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:47 Heat of formation + Delta-G solvation = -40.836211 kcal Electronic energy + Delta-G solvation = -13923.546411 eV Core-core repulsion = 11424.026417 eV Total energy + Delta-G solvation = -2499.519995 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.30354 -39.36623 -36.04336 -34.61594 -33.69000 -32.95976 -29.10128 -28.50469 -26.89075 -24.06060 -22.27198 -21.63445 -19.35836 -17.62667 -17.52390 -17.16613 -16.40030 -16.14506 -15.76317 -15.29215 -15.19011 -14.38494 -14.23315 -13.57954 -13.46902 -13.26174 -13.11083 -12.95623 -12.73467 -12.64312 -12.43350 -12.06564 -10.93766 -10.82846 -10.49322 -9.89912 -9.87122 -9.57960 -8.31621 -6.89072 0.13990 0.16404 1.40197 1.43263 1.55401 2.23946 2.43951 2.71119 3.23808 3.41447 3.54498 3.56971 3.80280 4.12574 4.16324 4.44473 4.59114 4.65576 4.70716 4.80326 4.83648 5.10155 5.21064 5.29556 5.39842 5.75678 5.82585 6.11051 6.21081 6.83872 6.99306 7.46096 8.43580 8.63567 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.047439 B = 0.005653 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.092248 B = 4951.558694 C = 5060.261213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.117 3.883 3 C -0.164 4.164 4 C -0.053 4.053 5 C 0.174 3.826 6 N -0.749 5.749 7 C 0.538 3.462 8 O -0.630 6.630 9 C -0.573 4.573 10 H 0.087 0.913 11 C 0.029 3.971 12 N -0.821 5.821 13 Si 0.999 3.001 14 H -0.254 1.254 15 H -0.274 1.274 16 H -0.254 1.254 17 C -0.168 4.168 18 C 0.102 3.898 19 N -0.504 5.504 20 H 0.090 0.910 21 H 0.080 0.920 22 H 0.087 0.913 23 H 0.141 0.859 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.393 0.607 27 H 0.276 0.724 28 H 0.144 0.856 29 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.845 -12.169 -0.530 15.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.020 4.020 3 C -0.184 4.184 4 C -0.061 4.061 5 C 0.050 3.950 6 N -0.404 5.404 7 C 0.343 3.657 8 O -0.518 6.518 9 C -0.610 4.610 10 H 0.105 0.895 11 C -0.187 4.187 12 N -0.450 5.450 13 Si 0.818 3.182 14 H -0.178 1.178 15 H -0.198 1.198 16 H -0.178 1.178 17 C -0.189 4.189 18 C -0.055 4.055 19 N -0.214 5.214 20 H 0.108 0.892 21 H 0.099 0.901 22 H 0.106 0.894 23 H 0.159 0.841 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.227 0.773 27 H 0.086 0.914 28 H 0.162 0.838 29 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -8.938 -12.307 -1.301 15.266 hybrid contribution 0.816 1.066 0.635 1.485 sum -8.122 -11.241 -0.667 13.884 Atomic orbital electron populations 1.20780 0.86565 1.04295 1.04073 1.21751 0.98556 0.87662 0.94056 1.22061 0.93840 1.00280 1.02263 1.20352 0.94382 0.94781 0.96569 1.19769 0.97512 0.91912 0.85830 1.45827 1.61436 1.27046 1.06061 1.18627 0.77240 0.79174 0.90657 1.90560 1.56842 1.56594 1.47755 1.21387 1.38059 1.10093 0.91412 0.89470 1.26985 0.92636 0.95123 1.03908 1.70171 1.27169 1.12305 1.35349 0.85050 0.79475 0.78074 0.75570 1.17833 1.19822 1.17811 1.22259 1.02380 0.92503 1.01729 1.23168 0.89098 0.99143 0.94046 1.67590 1.10668 1.29711 1.13456 0.89172 0.90083 0.89393 0.84120 0.93313 0.93171 0.77323 0.91429 0.83774 0.79663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.75 10.17 71.24 0.72 -1.02 15 2 C 0.12 2.92 6.78 42.55 0.29 3.20 15 3 C -0.16 -4.51 9.45 22.36 0.21 -4.30 15 4 C -0.05 -1.61 5.29 -19.67 -0.10 -1.71 15 5 C 0.17 6.82 5.85 85.63 0.50 7.32 15 6 N -0.75 -33.97 5.54 -471.15 -2.61 -36.58 15 7 C 0.54 31.34 7.75 86.36 0.67 32.01 15 8 O -0.63 -42.32 15.02 -4.32 -0.06 -42.38 15 9 C -0.57 -32.48 9.54 24.83 0.24 -32.25 15 10 H 0.09 4.42 7.85 -2.91 -0.02 4.40 15 11 C 0.03 1.60 5.50 85.30 0.47 2.07 15 12 N -0.82 -50.16 11.83 21.83 0.26 -49.90 15 13 Si 1.00 40.65 29.56 68.60 2.03 42.67 15 14 H -0.25 -9.73 7.11 99.48 0.71 -9.02 15 15 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15 16 H -0.25 -9.72 7.11 99.48 0.71 -9.01 15 17 C -0.17 -4.47 9.82 22.36 0.22 -4.25 15 18 C 0.10 2.40 11.18 84.67 0.95 3.35 15 19 N -0.50 -13.16 10.27 -183.88 -1.89 -15.05 15 20 H 0.09 1.34 8.14 -2.38 -0.02 1.32 15 21 H 0.08 1.34 8.14 -2.39 -0.02 1.32 15 22 H 0.09 1.31 8.08 -2.39 -0.02 1.29 15 23 H 0.14 3.60 8.06 -2.91 -0.02 3.58 15 24 H 0.05 2.02 8.10 -2.39 -0.02 2.00 15 25 H 0.05 2.07 8.10 -2.38 -0.02 2.05 15 26 H 0.39 15.82 8.44 -92.71 -0.78 15.03 15 27 H 0.28 15.25 8.29 -92.71 -0.77 14.48 15 28 H 0.14 3.49 8.06 -2.91 -0.02 3.47 15 29 H 0.19 3.05 8.06 -2.91 -0.02 3.03 15 Total: -1.00 -75.16 264.19 2.26 -72.89 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.38 Total: 23.91 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 4.16 Total: 4.43 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -4.24 Total: -101.52 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -0.06 Total: -42.38 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.67 kcal Total: -75.16 2.26 -72.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307263691.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.057 kcal (2) G-P(sol) polarization free energy of solvation -75.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds