Wall clock time and date at job start Thu Apr 9 2020 11:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37969 * 120.07419 * 2 1 4 4 C 1.38345 * 120.14391 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.84421 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47239 * 90.00449 * 5 4 3 7 7 H 1.07995 * 119.99711 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00170 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99688 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00135 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47019 * 89.99727 * 10 8 6 12 12 H 1.48499 * 109.46929 * 209.99725 * 10 8 6 13 13 H 1.48504 * 109.46937 * 329.99794 * 10 8 6 14 14 C 1.38389 * 120.30757 * 359.70274 * 4 3 2 15 15 C 1.37924 * 120.14853 * 0.55828 * 14 4 3 16 16 C 1.39609 * 120.07258 * 179.97438 * 2 1 3 17 17 C 1.47723 * 120.15311 * 0.03713 * 16 2 1 18 18 O 1.21475 * 119.99902 * 353.75353 * 17 16 2 19 19 O 1.34708 * 119.99960 * 173.74992 * 17 16 2 20 20 H 1.08996 * 109.46975 * 263.44566 * 1 2 3 21 21 H 1.09001 * 109.46927 * 23.43918 * 1 2 3 22 22 H 1.08997 * 109.47202 * 143.43690 * 1 2 3 23 23 H 1.07994 * 119.92759 * 359.97438 * 3 2 1 24 24 H 1.09006 * 109.47241 * 210.00278 * 5 4 3 25 25 H 1.08999 * 109.47439 * 329.99998 * 5 4 3 26 26 H 0.96999 * 119.99590 * 180.02562 * 9 8 6 27 27 H 1.08000 * 119.93064 * 180.29286 * 14 4 3 28 28 H 1.07996 * 120.07777 * 179.74864 * 15 14 4 29 29 H 0.96704 * 116.99379 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5819 1.1956 -0.0005 5 6 4.3302 2.5037 0.0001 6 6 4.5804 2.9387 1.4211 7 1 4.2319 2.3292 2.2416 8 6 5.2532 4.1154 1.6735 9 7 5.6771 4.8579 0.6742 10 14 5.5626 4.6550 3.4350 11 1 6.8600 4.1031 3.9011 12 1 5.6041 6.1381 3.4982 13 1 4.4695 4.1528 4.3058 14 6 4.2817 0.0018 0.0051 15 6 3.6031 -1.1990 -0.0003 16 6 2.2066 -1.2082 0.0005 17 6 1.4731 -2.4904 0.0003 18 8 0.2637 -2.4982 0.1141 19 8 2.1453 -3.6509 -0.1262 20 1 -0.3633 -0.1173 1.0209 21 1 -0.3633 0.9429 -0.4088 22 1 -0.3633 -0.8254 -0.6122 23 1 1.6585 2.1292 -0.0004 24 1 5.2830 2.3775 -0.5143 25 1 3.7380 3.2614 -0.5130 26 1 6.1507 5.6855 0.8519 27 1 5.3617 0.0102 0.0095 28 1 4.1504 -2.1300 0.0000 29 1 1.6219 -4.4641 -0.1213 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307288791.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:49 Heat of formation + Delta-G solvation = -83.865516 kcal Electronic energy + Delta-G solvation = -14113.059401 eV Core-core repulsion = 11579.380764 eV Total energy + Delta-G solvation = -2533.678636 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.29209 -38.44182 -36.04358 -33.74845 -32.19818 -31.38971 -27.71214 -26.79250 -24.14822 -22.12025 -21.67710 -19.69788 -17.91841 -16.93836 -16.40139 -15.56243 -14.92467 -14.84222 -14.13185 -13.96287 -13.26282 -12.87103 -12.67185 -12.44092 -12.10065 -11.77650 -11.42023 -11.31598 -11.23001 -10.82242 -10.70132 -10.40118 -10.08386 -9.62061 -9.54239 -8.50632 -8.31814 -8.08309 -6.12956 -4.17640 1.17006 1.86136 2.87858 3.21804 3.26230 3.32860 3.37077 4.22856 4.41941 5.16017 5.19446 5.23852 5.39660 5.61240 5.89829 5.92051 6.00134 6.12373 6.19384 6.40376 6.47085 6.69511 6.77416 6.98523 6.99622 7.35167 7.48980 7.66903 7.82324 8.05421 8.18871 8.87239 9.46907 10.97003 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.045453 B = 0.006343 C = 0.006178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.866620 B = 4413.126217 C = 4531.320766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.018 4.018 3 C -0.141 4.141 4 C 0.012 3.988 5 C 0.041 3.959 6 C -0.515 4.515 7 H 0.059 0.941 8 C 0.060 3.940 9 N -0.892 5.892 10 Si 0.897 3.103 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.273 1.273 14 C -0.146 4.146 15 C -0.058 4.058 16 C -0.171 4.171 17 C 0.529 3.471 18 O -0.522 6.522 19 O -0.516 6.516 20 H 0.071 0.929 21 H 0.059 0.941 22 H 0.086 0.914 23 H 0.129 0.871 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.263 0.737 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.743 -11.612 -2.046 13.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.019 4.019 3 C -0.159 4.159 4 C 0.012 3.988 5 C 0.004 3.996 6 C -0.553 4.553 7 H 0.077 0.923 8 C -0.142 4.142 9 N -0.531 5.531 10 Si 0.725 3.275 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.197 1.197 14 C -0.164 4.164 15 C -0.077 4.077 16 C -0.172 4.172 17 C 0.377 3.623 18 O -0.413 6.413 19 O -0.328 6.328 20 H 0.090 0.910 21 H 0.078 0.922 22 H 0.104 0.896 23 H 0.147 0.853 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -5.740 -11.078 -2.060 12.646 hybrid contribution -0.022 -0.166 1.010 1.024 sum -5.762 -11.244 -1.050 12.678 Atomic orbital electron populations 1.21058 0.90722 1.02653 1.03078 1.19949 0.96154 0.91470 0.94308 1.20983 0.94194 0.96827 1.03910 1.21060 0.93635 0.97638 0.86448 1.18497 0.95233 0.87665 0.98156 1.20993 1.36869 1.06389 0.91084 0.92321 1.25004 0.95425 0.96337 0.97424 1.69952 1.38237 1.14075 1.30792 0.86499 0.78764 0.77745 0.84503 1.20507 1.21086 1.19735 1.21110 1.00505 0.91440 1.03358 1.21318 0.92482 0.98600 0.95256 1.18631 0.93591 0.89110 1.15889 1.21103 0.85334 0.84163 0.71746 1.90800 1.15493 1.87666 1.47389 1.84605 1.45434 1.17114 1.85614 0.91010 0.92215 0.89590 0.85318 0.94782 0.94814 0.92694 0.85429 0.85442 0.73574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 8.73 36.01 0.31 -1.49 15 2 C -0.02 -0.32 5.92 -104.21 -0.62 -0.94 15 3 C -0.14 -2.69 9.31 -39.64 -0.37 -3.06 15 4 C 0.01 0.26 5.08 -104.53 -0.53 -0.27 15 5 C 0.04 1.01 5.09 -29.03 -0.15 0.87 15 6 C -0.52 -13.96 9.09 -34.44 -0.31 -14.28 15 7 H 0.06 1.58 7.74 -52.49 -0.41 1.18 15 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 15 9 N -0.89 -25.63 13.29 55.43 0.74 -24.89 15 10 Si 0.90 21.07 29.54 -169.99 -5.02 16.04 15 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 13 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 14 C -0.15 -2.70 9.68 -39.64 -0.38 -3.09 15 15 C -0.06 -0.96 9.62 -39.17 -0.38 -1.33 15 16 C -0.17 -2.88 5.87 -104.98 -0.62 -3.50 15 17 C 0.53 8.00 8.20 34.61 0.28 8.28 15 18 O -0.52 -8.63 14.13 -19.25 -0.27 -8.90 15 19 O -0.52 -5.98 12.70 -40.51 -0.51 -6.50 15 20 H 0.07 1.08 8.14 -51.93 -0.42 0.65 15 21 H 0.06 0.80 8.04 -51.93 -0.42 0.39 15 22 H 0.09 1.33 5.86 -51.93 -0.30 1.02 15 23 H 0.13 2.36 8.06 -52.49 -0.42 1.94 15 24 H 0.03 0.87 8.09 -51.93 -0.42 0.45 15 25 H 0.03 0.87 8.08 -51.93 -0.42 0.45 15 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 27 H 0.13 2.24 8.06 -52.49 -0.42 1.81 15 28 H 0.13 1.77 7.63 -52.49 -0.40 1.37 15 29 H 0.41 2.66 9.11 45.56 0.42 3.07 15 LS Contribution 260.14 15.07 3.92 3.92 Total: -1.00 -30.29 260.14 -6.36 -36.65 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -2.36 Total: 0.93 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -2.85 Total: -17.25 kcal Atomic # 7 Polarization: -25.63 SS G_CDS: 0.74 Total: -24.89 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.79 Total: -15.40 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.29 -6.36 -36.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307288791.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.220 kcal (2) G-P(sol) polarization free energy of solvation -30.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds