Wall clock time and date at job start Thu Apr 9 2020 11:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46970 * 2 1 4 4 C 1.53006 * 109.46916 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47036 * 179.97438 * 4 3 2 6 6 C 1.39685 * 119.99856 * 179.97438 * 5 4 3 7 7 C 1.39337 * 119.95014 * 359.97438 * 6 5 4 8 8 C 1.38475 * 120.42035 * 180.02562 * 7 6 5 9 9 C 1.37684 * 120.32918 * 359.97438 * 8 7 6 10 10 C 1.40751 * 119.89421 * 0.03199 * 9 8 7 11 11 C 1.41406 * 120.20989 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99858 * 24.36605 * 11 10 9 13 13 C 1.39935 * 119.99740 * 204.36617 * 11 10 9 14 14 N 1.30827 * 120.00201 * 17.83614 * 13 11 10 15 15 Si 1.86796 * 119.99610 * 197.83636 * 13 11 10 16 16 H 1.48497 * 109.47206 * 89.99987 * 15 13 11 17 17 H 1.48507 * 109.47251 * 209.99859 * 15 13 11 18 18 H 1.48501 * 109.47426 * 329.99960 * 15 13 11 19 19 C 1.38280 * 119.95177 * 179.97438 * 6 5 4 20 20 H 1.08998 * 109.46775 * 300.00315 * 1 2 3 21 21 H 1.08997 * 109.47110 * 59.99804 * 1 2 3 22 22 H 1.09002 * 109.47243 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46775 * 239.99685 * 2 1 3 24 24 H 1.09005 * 109.47044 * 119.99853 * 2 1 3 25 25 H 1.08998 * 109.47629 * 60.00207 * 3 2 1 26 26 H 1.09005 * 109.47117 * 299.99808 * 3 2 1 27 27 H 1.08998 * 109.47120 * 59.99507 * 4 3 2 28 28 H 1.09005 * 109.46753 * 299.99642 * 4 3 2 29 29 H 0.96998 * 120.00141 * 0.02562 * 5 4 3 30 30 H 1.07997 * 119.78902 * 0.02562 * 7 6 5 31 31 H 1.08005 * 119.83675 * 179.97438 * 8 7 6 32 32 H 1.08001 * 120.05769 * 179.97438 * 9 8 7 33 33 H 0.97003 * 119.99955 * 179.97438 * 14 13 11 34 34 H 1.08002 * 120.15877 * 359.70841 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0584 2.8237 -0.0013 6 6 5.4318 3.0789 -0.0014 7 6 6.3363 2.0191 -0.0004 8 6 7.6997 2.2609 0.0001 9 6 8.1768 3.5524 -0.0010 10 6 7.2752 4.6333 -0.0019 11 6 7.7578 5.9624 -0.0025 12 1 8.7431 6.1790 -0.3882 13 6 6.9587 6.9971 0.4967 14 7 5.9391 6.7219 1.2688 15 14 7.3480 8.7712 0.0604 16 1 6.6244 9.1460 -1.1810 17 1 6.9193 9.6595 1.1706 18 1 8.8099 8.9187 -0.1551 19 6 5.8916 4.3830 -0.0025 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6768 1.9564 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 3.9330 0.9287 -0.8908 28 1 3.9337 0.9285 0.8892 29 1 3.4281 3.5610 -0.0008 30 1 5.9716 1.0025 0.0001 31 1 8.3925 1.4322 0.0013 32 1 9.2411 3.7360 -0.0003 33 1 5.3855 7.4392 1.6151 34 1 5.1914 5.2053 -0.0080 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313451816.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:06 Heat of formation + Delta-G solvation = -4.421089 kcal Electronic energy + Delta-G solvation = -14087.708043 eV Core-core repulsion = 11791.026132 eV Total energy + Delta-G solvation = -2296.681911 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -37.86876 -36.04519 -33.99904 -32.97982 -29.49850 -29.37904 -26.60378 -25.16844 -22.96447 -21.44362 -20.47364 -19.77353 -17.13580 -15.76643 -15.60909 -14.83107 -14.70681 -14.20651 -13.62779 -13.60978 -12.79840 -12.70665 -12.27101 -12.07066 -11.90999 -11.46644 -11.11948 -11.08333 -10.98695 -10.85689 -10.63968 -10.46266 -10.34065 -9.56506 -9.39648 -9.19218 -8.69998 -7.26472 -6.68712 -6.10409 -4.26928 2.90537 3.12405 3.16222 3.27828 3.38780 4.01024 4.32754 4.76825 4.94002 4.99383 5.11007 5.43331 5.62081 5.70621 5.78069 5.85622 5.97231 5.98817 6.10668 6.32403 6.35774 6.37376 6.64281 6.93293 7.16650 7.18592 7.42967 7.49878 7.86961 8.01509 8.16080 8.22340 8.54062 8.77979 8.89165 9.05956 9.17326 10.30090 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.034862 B = 0.006165 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.973192 B = 4540.444792 C = 5245.429326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.131 4.131 4 C 0.136 3.864 5 N -0.763 5.763 6 C 0.215 3.785 7 C -0.300 4.300 8 C -0.066 4.066 9 C -0.258 4.258 10 C 0.139 3.861 11 C -0.466 4.466 12 H 0.076 0.924 13 C 0.078 3.922 14 N -0.793 5.793 15 Si 0.905 3.095 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.263 1.263 19 C -0.232 4.232 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.389 0.611 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.277 0.723 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.996 -6.565 -1.641 10.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.169 4.169 4 C 0.011 3.989 5 N -0.396 5.396 6 C 0.116 3.884 7 C -0.323 4.323 8 C -0.085 4.085 9 C -0.279 4.279 10 C 0.135 3.865 11 C -0.496 4.496 12 H 0.094 0.906 13 C -0.139 4.139 14 N -0.419 5.419 15 Si 0.729 3.271 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.187 1.187 19 C -0.256 4.256 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.222 0.778 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.168 -6.659 -1.492 10.644 hybrid contribution -0.116 1.075 -0.050 1.082 sum -8.285 -5.584 -1.542 10.109 Atomic orbital electron populations 1.21768 0.95940 1.01370 1.01796 1.21437 0.95681 0.96584 1.02203 1.21797 0.95589 0.97096 1.02370 1.21047 0.92393 0.85349 1.00112 1.44443 1.04296 1.05215 1.85673 1.17673 0.82014 0.94049 0.94667 1.19893 0.92894 0.95389 1.24077 1.20283 0.93968 0.95574 0.98701 1.20858 0.97541 0.92470 1.16991 1.17323 0.90832 0.92366 0.85941 1.19564 1.01911 0.91468 1.36637 0.90578 1.25873 0.94070 1.01372 0.92613 1.69874 1.14581 1.34725 1.22731 0.86382 0.79986 0.81783 0.78916 1.19418 1.20472 1.18684 1.20728 0.96315 0.92711 1.15863 0.92784 0.92807 0.92898 0.91895 0.91868 0.91658 0.91735 0.93553 0.93528 0.77822 0.89678 0.89651 0.89399 0.91238 0.86569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.12 -1.26 5.93 -26.73 -0.16 -1.42 16 3 C -0.13 -1.63 5.33 -26.73 -0.14 -1.77 16 4 C 0.14 2.19 4.91 -4.04 -0.02 2.17 16 5 N -0.76 -15.14 5.73 -58.68 -0.34 -15.47 16 6 C 0.21 5.20 6.64 -83.86 -0.56 4.64 16 7 C -0.30 -7.08 9.32 -39.09 -0.36 -7.44 16 8 C -0.07 -1.58 10.01 -39.70 -0.40 -1.98 16 9 C -0.26 -6.69 9.79 -38.83 -0.38 -7.07 16 10 C 0.14 3.86 5.57 -106.85 -0.60 3.26 16 11 C -0.47 -12.83 9.05 -37.74 -0.34 -13.17 16 12 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16 13 C 0.08 2.02 5.14 -17.34 -0.09 1.93 16 14 N -0.79 -21.08 10.95 55.55 0.61 -20.47 16 15 Si 0.90 19.17 29.59 -169.99 -5.03 14.14 16 16 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 17 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 18 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 19 C -0.23 -6.25 8.53 -38.68 -0.33 -6.58 16 20 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.75 7.94 -51.93 -0.41 0.34 16 28 H 0.05 0.77 7.94 -51.93 -0.41 0.36 16 29 H 0.39 7.30 8.48 -40.82 -0.35 6.95 16 30 H 0.09 1.82 6.70 -52.49 -0.35 1.46 16 31 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 32 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 33 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 34 H 0.12 3.21 6.16 -52.49 -0.32 2.88 16 LS Contribution 284.28 15.07 4.28 4.28 Total: -1.00 -28.64 284.28 -8.68 -37.32 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.20 Total: 8.63 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: -3.01 Total: -28.43 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.27 Total: -35.94 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.64 -8.68 -37.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313451816.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.902 kcal (2) G-P(sol) polarization free energy of solvation -28.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds