Wall clock time and date at job start Thu Apr 9 2020 11:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46970 * 2 1 4 4 C 1.53006 * 109.46916 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47036 * 179.97438 * 4 3 2 6 6 C 1.39685 * 119.99856 * 179.97438 * 5 4 3 7 7 C 1.39337 * 119.95014 * 359.97438 * 6 5 4 8 8 C 1.38475 * 120.42035 * 180.02562 * 7 6 5 9 9 C 1.37684 * 120.32918 * 359.97438 * 8 7 6 10 10 C 1.40751 * 119.89421 * 0.03199 * 9 8 7 11 11 C 1.41406 * 120.20989 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99858 * 24.36605 * 11 10 9 13 13 C 1.39935 * 119.99740 * 204.36617 * 11 10 9 14 14 N 1.30827 * 120.00201 * 17.83614 * 13 11 10 15 15 Si 1.86796 * 119.99610 * 197.83636 * 13 11 10 16 16 H 1.48497 * 109.47206 * 89.99987 * 15 13 11 17 17 H 1.48507 * 109.47251 * 209.99859 * 15 13 11 18 18 H 1.48501 * 109.47426 * 329.99960 * 15 13 11 19 19 C 1.38280 * 119.95177 * 179.97438 * 6 5 4 20 20 H 1.08998 * 109.46775 * 300.00315 * 1 2 3 21 21 H 1.08997 * 109.47110 * 59.99804 * 1 2 3 22 22 H 1.09002 * 109.47243 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46775 * 239.99685 * 2 1 3 24 24 H 1.09005 * 109.47044 * 119.99853 * 2 1 3 25 25 H 1.08998 * 109.47629 * 60.00207 * 3 2 1 26 26 H 1.09005 * 109.47117 * 299.99808 * 3 2 1 27 27 H 1.08998 * 109.47120 * 59.99507 * 4 3 2 28 28 H 1.09005 * 109.46753 * 299.99642 * 4 3 2 29 29 H 0.96998 * 120.00141 * 0.02562 * 5 4 3 30 30 H 1.07997 * 119.78902 * 0.02562 * 7 6 5 31 31 H 1.08005 * 119.83675 * 179.97438 * 8 7 6 32 32 H 1.08001 * 120.05769 * 179.97438 * 9 8 7 33 33 H 0.97003 * 119.99955 * 179.97438 * 14 13 11 34 34 H 1.08002 * 120.15877 * 359.70841 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0584 2.8237 -0.0013 6 6 5.4318 3.0789 -0.0014 7 6 6.3363 2.0191 -0.0004 8 6 7.6997 2.2609 0.0001 9 6 8.1768 3.5524 -0.0010 10 6 7.2752 4.6333 -0.0019 11 6 7.7578 5.9624 -0.0025 12 1 8.7431 6.1790 -0.3882 13 6 6.9587 6.9971 0.4967 14 7 5.9391 6.7219 1.2688 15 14 7.3480 8.7712 0.0604 16 1 6.6244 9.1460 -1.1810 17 1 6.9193 9.6595 1.1706 18 1 8.8099 8.9187 -0.1551 19 6 5.8916 4.3830 -0.0025 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6768 1.9564 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 3.9330 0.9287 -0.8908 28 1 3.9337 0.9285 0.8892 29 1 3.4281 3.5610 -0.0008 30 1 5.9716 1.0025 0.0001 31 1 8.3925 1.4322 0.0013 32 1 9.2411 3.7360 -0.0003 33 1 5.3855 7.4392 1.6151 34 1 5.1914 5.2053 -0.0080 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313451816.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:06 Heat of formation + Delta-G solvation = -19.840340 kcal Electronic energy + Delta-G solvation = -14088.376671 eV Core-core repulsion = 11791.026132 eV Total energy + Delta-G solvation = -2297.350540 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.67658 -37.42285 -35.61880 -34.60027 -31.35361 -30.89923 -28.08264 -27.13891 -24.24248 -22.94468 -21.81683 -21.61976 -19.06257 -17.58452 -16.61929 -16.56734 -16.45530 -15.97597 -14.79147 -14.74230 -14.52713 -14.27783 -13.98055 -13.51163 -13.24835 -13.05269 -12.77799 -12.61706 -12.31132 -12.11013 -11.95678 -11.93457 -11.51834 -11.45643 -11.30351 -11.06538 -10.48623 -9.26295 -8.62236 -7.91672 -6.32640 1.08107 1.32699 1.38770 1.52012 1.58779 2.23355 2.79118 2.85464 3.85506 3.95499 4.04721 4.22073 4.49801 4.51105 4.64488 4.68672 4.79536 4.93546 4.98642 4.99346 5.07993 5.19854 5.23698 5.30438 5.37686 5.44149 5.46475 5.60858 5.95959 6.10430 6.21107 6.26110 6.57751 6.93835 7.04829 7.06841 7.24921 8.38478 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.034862 B = 0.006165 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.973192 B = 4540.444792 C = 5245.429326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.121 4.121 4 C 0.133 3.867 5 N -0.758 5.758 6 C 0.216 3.784 7 C -0.305 4.305 8 C -0.062 4.062 9 C -0.286 4.286 10 C 0.108 3.892 11 C -0.505 4.505 12 H 0.072 0.928 13 C 0.037 3.963 14 N -0.823 5.823 15 Si 0.981 3.019 16 H -0.263 1.263 17 H -0.267 1.267 18 H -0.259 1.259 19 C -0.262 4.262 20 H 0.053 0.947 21 H 0.055 0.945 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.392 0.608 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.285 0.715 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.906 -7.221 -1.844 11.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.159 4.159 4 C 0.009 3.991 5 N -0.390 5.390 6 C 0.115 3.885 7 C -0.328 4.328 8 C -0.081 4.081 9 C -0.306 4.306 10 C 0.105 3.895 11 C -0.535 4.535 12 H 0.091 0.909 13 C -0.178 4.178 14 N -0.449 5.449 15 Si 0.802 3.198 16 H -0.187 1.187 17 H -0.192 1.192 18 H -0.183 1.183 19 C -0.286 4.286 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.226 0.774 30 H 0.130 0.870 31 H 0.138 0.862 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.110 -7.349 -1.693 11.826 hybrid contribution 0.115 1.149 0.030 1.155 sum -8.995 -6.199 -1.662 11.050 Atomic orbital electron populations 1.21753 0.94727 1.02288 1.01944 1.21426 0.96693 0.94887 1.02605 1.21736 0.92834 0.98811 1.02527 1.21269 0.94795 0.82976 1.00051 1.44601 1.02799 1.07206 1.84429 1.17826 0.84165 0.93365 0.93170 1.20240 0.92829 0.96437 1.23259 1.20660 0.94889 0.95732 0.96813 1.21034 0.97650 0.93242 1.18700 1.17728 0.91815 0.93326 0.86618 1.19829 1.02588 0.92587 1.38472 0.90939 1.26734 0.93570 1.05703 0.91754 1.69929 1.15367 1.36521 1.23105 0.85227 0.79851 0.75789 0.78925 1.18747 1.19179 1.18286 1.20673 0.95925 0.93557 1.18431 0.92744 0.92601 0.91635 0.91411 0.91605 0.91699 0.91417 0.93258 0.93669 0.77445 0.87012 0.86247 0.89066 0.90424 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.91 71.98 0.71 -1.60 16 2 C -0.12 -2.16 5.93 30.60 0.18 -1.98 16 3 C -0.12 -2.78 5.33 30.60 0.16 -2.62 16 4 C 0.13 4.03 4.91 86.38 0.42 4.45 16 5 N -0.76 -29.53 5.73 -339.55 -1.95 -31.48 16 6 C 0.22 10.44 6.64 38.16 0.25 10.70 16 7 C -0.30 -13.99 9.32 22.59 0.21 -13.78 16 8 C -0.06 -2.91 10.01 22.20 0.22 -2.69 16 9 C -0.29 -15.05 9.79 22.75 0.22 -14.82 16 10 C 0.11 6.21 5.57 -21.31 -0.12 6.10 16 11 C -0.51 -28.75 9.05 23.46 0.21 -28.53 16 12 H 0.07 4.00 7.91 -2.91 -0.02 3.97 16 13 C 0.04 1.95 5.14 85.25 0.44 2.39 16 14 N -0.82 -44.64 10.95 21.82 0.24 -44.41 16 15 Si 0.98 39.61 29.59 68.60 2.03 41.64 16 16 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 17 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 18 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 19 C -0.26 -14.46 8.53 22.86 0.19 -14.26 16 20 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 21 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 22 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 24 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 26 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.05 1.48 7.94 -2.39 -0.02 1.47 16 28 H 0.05 1.40 7.94 -2.38 -0.02 1.38 16 29 H 0.39 14.62 8.48 -92.71 -0.79 13.83 16 30 H 0.11 4.47 6.70 -2.91 -0.02 4.45 16 31 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 32 H 0.09 4.57 8.06 -2.91 -0.02 4.55 16 33 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 34 H 0.10 5.72 6.16 -2.91 -0.02 5.70 16 Total: -1.00 -62.19 284.28 3.73 -58.46 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 0.28 Total: 32.43 kcal Atomic # 6 Polarization: -59.77 SS G_CDS: 3.12 Total: -56.65 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -1.71 Total: -75.89 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -62.19 3.73 -58.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313451816.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.623 kcal (2) G-P(sol) polarization free energy of solvation -62.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds