Wall clock time and date at job start Thu Apr 9 2020 11:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47422 * 2 1 4 4 C 1.50706 * 109.46797 * 120.00375 * 2 1 3 5 5 C 1.38349 * 119.95219 * 299.99532 * 4 2 1 6 6 C 1.38310 * 120.17704 * 179.97438 * 5 4 2 7 7 C 1.38069 * 120.09123 * 0.25848 * 6 5 4 8 8 C 1.39061 * 119.90649 * 359.49494 * 7 6 5 9 9 N 1.39307 * 120.08929 * 180.28001 * 8 7 6 10 10 C 1.46500 * 119.99932 * 180.22013 * 9 8 7 11 11 C 1.36851 * 119.99939 * 0.22388 * 9 8 7 12 12 H 1.07998 * 119.99753 * 27.22246 * 11 9 8 13 13 C 1.38788 * 119.99976 * 207.22367 * 11 9 8 14 14 N 1.31598 * 120.00005 * 10.50757 * 13 11 9 15 15 Si 1.86798 * 120.00235 * 190.50216 * 13 11 9 16 16 H 1.48499 * 109.47381 * 89.99940 * 15 13 11 17 17 H 1.48501 * 109.47396 * 210.00517 * 15 13 11 18 18 H 1.48508 * 109.47034 * 330.00081 * 15 13 11 19 19 C 1.38026 * 119.95531 * 119.98256 * 4 2 1 20 20 H 1.08994 * 109.47238 * 299.99620 * 1 2 3 21 21 H 1.09005 * 109.47387 * 59.99958 * 1 2 3 22 22 H 1.09000 * 109.47128 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46899 * 239.99767 * 2 1 3 24 24 H 1.09004 * 109.46547 * 60.00113 * 3 2 1 25 25 H 1.08991 * 109.47101 * 179.97438 * 3 2 1 26 26 H 1.08991 * 109.46911 * 300.00516 * 3 2 1 27 27 H 1.08000 * 119.91257 * 0.02562 * 5 4 2 28 28 H 1.08000 * 119.95459 * 179.97438 * 6 5 4 29 29 H 1.08003 * 120.04989 * 179.72123 * 7 6 5 30 30 H 1.09006 * 109.46940 * 84.90469 * 10 9 8 31 31 H 1.08993 * 109.47058 * 204.89950 * 10 9 8 32 32 H 1.08994 * 109.47251 * 324.90464 * 10 9 8 33 33 H 0.97000 * 120.00066 * 180.02562 * 14 13 11 34 34 H 1.08007 * 120.04755 * 359.97438 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.6975 -0.2370 2.4866 6 6 2.1554 -0.8858 3.6190 7 6 2.9534 -2.0062 3.4999 8 6 3.2880 -2.4883 2.2391 9 7 4.0881 -3.6218 2.1145 10 6 4.4433 -4.1252 0.7854 11 6 4.5422 -4.2652 3.2338 12 1 3.9796 -4.2100 4.1540 13 6 5.7258 -4.9885 3.1862 14 7 6.5154 -4.8901 2.1381 15 14 6.1981 -6.1014 4.6102 16 1 5.6481 -7.4613 4.3792 17 1 7.6779 -6.1763 4.7102 18 1 5.6439 -5.5513 5.8734 19 6 2.8254 -1.8329 1.1027 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.6767 1.9562 0.8901 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.0762 0.6411 2.5832 28 1 1.8922 -0.5128 4.5978 29 1 3.3144 -2.5096 4.3846 30 1 5.3199 -3.5921 0.4173 31 1 4.6656 -5.1904 0.8478 32 1 3.6088 -3.9676 0.1022 33 1 7.3424 -5.3959 2.1047 34 1 3.0858 -2.2023 0.1218 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334266781.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:10 Heat of formation + Delta-G solvation = 20.679388 kcal Electronic energy + Delta-G solvation = -14651.725483 eV Core-core repulsion = 12356.132011 eV Total energy + Delta-G solvation = -2295.593473 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.75313 -36.31087 -34.11791 -31.82192 -29.35123 -28.14629 -26.83262 -26.37397 -23.74555 -22.18456 -20.61494 -19.11141 -16.94956 -16.36887 -14.94419 -14.60224 -14.26308 -13.82654 -13.48688 -13.34099 -12.92435 -12.71943 -12.58809 -11.99138 -11.51219 -11.34408 -11.24663 -11.17365 -10.80889 -10.77577 -10.70497 -10.46952 -10.33982 -10.03294 -9.61351 -9.21976 -8.51359 -7.74910 -6.56705 -6.25554 -3.76675 2.50860 2.70949 3.17800 3.19790 3.22887 4.08206 4.76610 5.01616 5.15833 5.26115 5.29096 5.60734 5.87811 5.88406 5.96710 6.10771 6.11180 6.22101 6.25296 6.40567 6.51325 6.56588 6.58255 6.69512 6.87636 7.00958 7.15522 7.24351 7.39348 7.56853 7.63025 7.73429 7.93884 8.22360 8.70848 9.34634 9.68346 10.68287 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.049180 B = 0.007125 C = 0.006576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.195861 B = 3928.779070 C = 4256.777610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.054 4.054 3 C -0.139 4.139 4 C -0.027 4.027 5 C -0.235 4.235 6 C -0.069 4.069 7 C -0.218 4.218 8 C 0.217 3.783 9 N -0.454 5.454 10 C 0.125 3.875 11 C -0.306 4.306 12 H 0.093 0.907 13 C 0.026 3.974 14 N -0.880 5.880 15 Si 0.926 3.074 16 H -0.278 1.278 17 H -0.283 1.283 18 H -0.270 1.270 19 C -0.235 4.235 20 H 0.055 0.945 21 H 0.047 0.953 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.268 0.732 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.751 5.805 -2.593 9.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.073 4.073 3 C -0.196 4.196 4 C -0.028 4.028 5 C -0.257 4.257 6 C -0.088 4.088 7 C -0.242 4.242 8 C 0.100 3.900 9 N -0.141 5.141 10 C -0.018 4.018 11 C -0.435 4.435 12 H 0.110 0.890 13 C -0.177 4.177 14 N -0.516 5.516 15 Si 0.752 3.248 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.259 4.259 20 H 0.074 0.926 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.131 0.869 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.330 5.413 -2.699 8.755 hybrid contribution 0.485 -0.647 0.666 1.047 sum -5.845 4.766 -2.033 7.811 Atomic orbital electron populations 1.21801 0.95133 1.01627 1.01007 1.20053 0.95291 0.95659 0.96296 1.21801 1.01205 0.95627 1.00983 1.19219 0.95727 0.94294 0.93535 1.20129 1.09852 1.03659 0.92045 1.20601 0.96310 0.94883 0.96986 1.20468 1.06878 1.00738 0.96102 1.18013 0.92528 0.86053 0.93366 1.42488 1.44733 1.21310 1.05578 1.21349 0.96729 1.00474 0.83287 1.19545 1.04784 1.27824 0.91334 0.88974 1.25387 0.94950 0.99105 0.98281 1.70065 1.11713 1.40360 1.29505 0.85932 0.77751 0.80068 0.81003 1.20388 1.20873 1.19415 1.20260 1.08653 1.00418 0.96576 0.92588 0.93361 0.92789 0.91387 0.92598 0.92705 0.93360 0.88637 0.88261 0.86906 0.93523 0.91254 0.95673 0.92235 0.87746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.01 37.16 0.33 -1.50 16 2 C -0.05 -0.83 3.09 -91.77 -0.28 -1.11 16 3 C -0.14 -1.88 9.01 37.16 0.33 -1.54 16 4 C -0.03 -0.51 4.78 -104.66 -0.50 -1.01 16 5 C -0.23 -4.42 8.71 -39.51 -0.34 -4.76 16 6 C -0.07 -1.36 10.04 -39.62 -0.40 -1.76 16 7 C -0.22 -4.98 9.26 -39.34 -0.36 -5.34 16 8 C 0.22 5.23 6.52 -83.84 -0.55 4.69 16 9 N -0.45 -11.75 3.12 -120.50 -0.38 -12.12 16 10 C 0.13 3.00 8.32 59.85 0.50 3.50 16 11 C -0.31 -8.19 8.89 -15.11 -0.13 -8.33 16 12 H 0.09 2.41 6.33 -52.49 -0.33 2.08 16 13 C 0.03 0.69 5.07 -17.45 -0.09 0.60 16 14 N -0.88 -23.83 10.90 55.49 0.60 -23.23 16 15 Si 0.93 20.29 29.57 -169.99 -5.03 15.27 16 16 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 19 C -0.23 -5.08 8.82 -39.34 -0.35 -5.43 16 20 H 0.06 0.73 7.38 -51.93 -0.38 0.34 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.07 1.02 7.87 -51.93 -0.41 0.61 16 24 H 0.05 0.74 7.38 -51.93 -0.38 0.36 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.10 1.58 7.09 -52.49 -0.37 1.21 16 28 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.11 2.61 6.25 -52.48 -0.33 2.28 16 30 H 0.05 1.16 7.82 -51.93 -0.41 0.75 16 31 H 0.07 1.72 6.88 -51.93 -0.36 1.36 16 32 H 0.02 0.53 6.48 -51.93 -0.34 0.19 16 33 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.10 2.17 6.14 -52.48 -0.32 1.85 16 LS Contribution 274.98 15.07 4.14 4.14 Total: -1.00 -27.62 274.98 -7.37 -34.99 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.88 Total: 2.95 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -1.84 Total: -22.01 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.23 Total: -35.35 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.62 -7.37 -34.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334266781.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.672 kcal (2) G-P(sol) polarization free energy of solvation -27.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds