Wall clock time and date at job start Thu Apr 9 2020 11:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47422 * 2 1 4 4 C 1.50706 * 109.46797 * 120.00375 * 2 1 3 5 5 C 1.38349 * 119.95219 * 299.99532 * 4 2 1 6 6 C 1.38310 * 120.17704 * 179.97438 * 5 4 2 7 7 C 1.38069 * 120.09123 * 0.25848 * 6 5 4 8 8 C 1.39061 * 119.90649 * 359.49494 * 7 6 5 9 9 N 1.39307 * 120.08929 * 180.28001 * 8 7 6 10 10 C 1.46500 * 119.99932 * 180.22013 * 9 8 7 11 11 C 1.36851 * 119.99939 * 0.22388 * 9 8 7 12 12 H 1.07998 * 119.99753 * 27.22246 * 11 9 8 13 13 C 1.38788 * 119.99976 * 207.22367 * 11 9 8 14 14 N 1.31598 * 120.00005 * 10.50757 * 13 11 9 15 15 Si 1.86798 * 120.00235 * 190.50216 * 13 11 9 16 16 H 1.48499 * 109.47381 * 89.99940 * 15 13 11 17 17 H 1.48501 * 109.47396 * 210.00517 * 15 13 11 18 18 H 1.48508 * 109.47034 * 330.00081 * 15 13 11 19 19 C 1.38026 * 119.95531 * 119.98256 * 4 2 1 20 20 H 1.08994 * 109.47238 * 299.99620 * 1 2 3 21 21 H 1.09005 * 109.47387 * 59.99958 * 1 2 3 22 22 H 1.09000 * 109.47128 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46899 * 239.99767 * 2 1 3 24 24 H 1.09004 * 109.46547 * 60.00113 * 3 2 1 25 25 H 1.08991 * 109.47101 * 179.97438 * 3 2 1 26 26 H 1.08991 * 109.46911 * 300.00516 * 3 2 1 27 27 H 1.08000 * 119.91257 * 0.02562 * 5 4 2 28 28 H 1.08000 * 119.95459 * 179.97438 * 6 5 4 29 29 H 1.08003 * 120.04989 * 179.72123 * 7 6 5 30 30 H 1.09006 * 109.46940 * 84.90469 * 10 9 8 31 31 H 1.08993 * 109.47058 * 204.89950 * 10 9 8 32 32 H 1.08994 * 109.47251 * 324.90464 * 10 9 8 33 33 H 0.97000 * 120.00066 * 180.02562 * 14 13 11 34 34 H 1.08007 * 120.04755 * 359.97438 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.6975 -0.2370 2.4866 6 6 2.1554 -0.8858 3.6190 7 6 2.9534 -2.0062 3.4999 8 6 3.2880 -2.4883 2.2391 9 7 4.0881 -3.6218 2.1145 10 6 4.4433 -4.1252 0.7854 11 6 4.5422 -4.2652 3.2338 12 1 3.9796 -4.2100 4.1540 13 6 5.7258 -4.9885 3.1862 14 7 6.5154 -4.8901 2.1381 15 14 6.1981 -6.1014 4.6102 16 1 5.6481 -7.4613 4.3792 17 1 7.6779 -6.1763 4.7102 18 1 5.6439 -5.5513 5.8734 19 6 2.8254 -1.8329 1.1027 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.6767 1.9562 0.8901 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.0762 0.6411 2.5832 28 1 1.8922 -0.5128 4.5978 29 1 3.3144 -2.5096 4.3846 30 1 5.3199 -3.5921 0.4173 31 1 4.6656 -5.1904 0.8478 32 1 3.6088 -3.9676 0.1022 33 1 7.3424 -5.3959 2.1047 34 1 3.0858 -2.2023 0.1218 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334266781.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:09 Heat of formation + Delta-G solvation = 7.220003 kcal Electronic energy + Delta-G solvation = -14652.309126 eV Core-core repulsion = 12356.132011 eV Total energy + Delta-G solvation = -2296.177115 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.41305 -37.95686 -35.61021 -33.69922 -30.97377 -29.87131 -28.24162 -27.86792 -25.58065 -23.66991 -22.27075 -20.67759 -18.80332 -18.07234 -16.65852 -16.20543 -15.90018 -15.46000 -15.14780 -14.85501 -14.30833 -14.21112 -14.15394 -13.31554 -13.07388 -12.99987 -12.87974 -12.73858 -12.58569 -12.31268 -12.12991 -12.00312 -11.91345 -11.40432 -11.21633 -11.06677 -10.35349 -9.38147 -8.45739 -8.14380 -5.77128 0.84598 1.03138 1.39665 1.45654 1.51854 2.27171 2.93386 3.22946 3.36920 3.96072 4.12036 4.36607 4.46113 4.54959 4.64847 4.69136 4.85320 4.88354 4.91895 4.96159 5.08023 5.08566 5.21623 5.23220 5.31750 5.40133 5.48186 5.50924 5.53659 5.85295 5.94449 6.09144 6.11684 6.52702 6.78483 7.46519 7.77864 8.74905 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.049180 B = 0.007125 C = 0.006576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.195861 B = 3928.779070 C = 4256.777610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.057 4.057 3 C -0.136 4.136 4 C -0.024 4.024 5 C -0.220 4.220 6 C -0.067 4.067 7 C -0.243 4.243 8 C 0.192 3.808 9 N -0.486 5.486 10 C 0.143 3.857 11 C -0.326 4.326 12 H 0.087 0.913 13 C -0.021 4.021 14 N -0.913 5.913 15 Si 0.992 3.008 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.264 1.264 19 C -0.248 4.248 20 H 0.061 0.939 21 H 0.074 0.926 22 H 0.044 0.956 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.040 0.960 26 H 0.074 0.926 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.099 0.901 30 H 0.026 0.974 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.267 0.733 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.542 7.645 -2.515 11.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.075 4.075 3 C -0.193 4.193 4 C -0.025 4.025 5 C -0.242 4.242 6 C -0.086 4.086 7 C -0.267 4.267 8 C 0.079 3.921 9 N -0.177 5.177 10 C -0.001 4.001 11 C -0.454 4.454 12 H 0.105 0.895 13 C -0.221 4.221 14 N -0.552 5.552 15 Si 0.816 3.184 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.188 1.188 19 C -0.272 4.272 20 H 0.080 0.920 21 H 0.093 0.907 22 H 0.063 0.937 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.060 0.940 26 H 0.093 0.907 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.117 0.883 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.165 7.297 -2.620 11.260 hybrid contribution 0.865 -0.989 0.597 1.443 sum -7.300 6.308 -2.023 9.858 Atomic orbital electron populations 1.21776 0.93139 1.01581 1.02670 1.20155 0.96852 0.96318 0.94189 1.21783 1.00389 0.94431 1.02691 1.19725 0.94002 0.93103 0.95638 1.20595 1.08395 1.03785 0.91377 1.20976 0.94911 0.93556 0.99129 1.20593 1.08517 1.02263 0.95306 1.18467 0.92460 0.86406 0.94771 1.42584 1.46716 1.22858 1.05510 1.21095 0.96620 0.98898 0.83474 1.19735 1.05193 1.28702 0.91777 0.89532 1.26221 0.94646 1.00386 1.00819 1.70182 1.12136 1.41576 1.31273 0.84927 0.77230 0.78198 0.78040 1.19732 1.20692 1.18837 1.20488 1.09322 1.01391 0.95976 0.91957 0.90742 0.93727 0.91460 0.91946 0.94034 0.90679 0.85187 0.85148 0.88307 0.95589 0.93026 0.93536 0.92321 0.87626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.01 71.98 0.65 -2.37 16 2 C -0.06 -1.54 3.09 -11.54 -0.04 -1.58 16 3 C -0.14 -3.15 9.01 71.98 0.65 -2.50 16 4 C -0.02 -0.85 4.78 -19.89 -0.10 -0.94 16 5 C -0.22 -7.53 8.71 22.31 0.19 -7.34 16 6 C -0.07 -2.52 10.04 22.25 0.22 -2.29 16 7 C -0.24 -11.15 9.26 22.43 0.21 -10.94 16 8 C 0.19 9.42 6.52 38.36 0.25 9.67 16 9 N -0.49 -26.08 3.12 -535.15 -1.67 -27.75 16 10 C 0.14 7.14 8.32 127.77 1.06 8.20 16 11 C -0.33 -18.09 8.89 84.04 0.75 -17.34 16 12 H 0.09 4.72 6.33 -2.91 -0.02 4.70 16 13 C -0.02 -1.13 5.07 84.86 0.43 -0.70 16 14 N -0.91 -51.35 10.90 21.65 0.24 -51.12 16 15 Si 0.99 42.63 29.57 68.60 2.03 44.66 16 16 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 17 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 19 C -0.25 -10.65 8.82 22.43 0.20 -10.45 16 20 H 0.06 1.32 7.38 -2.39 -0.02 1.30 16 21 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 22 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.07 1.85 7.87 -2.38 -0.02 1.83 16 24 H 0.06 1.36 7.38 -2.38 -0.02 1.35 16 25 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 27 H 0.13 3.61 7.09 -2.91 -0.02 3.59 16 28 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 29 H 0.10 4.72 6.25 -2.91 -0.02 4.70 16 30 H 0.03 1.35 7.82 -2.38 -0.02 1.34 16 31 H 0.05 2.69 6.88 -2.39 -0.02 2.67 16 32 H 0.05 2.03 6.48 -2.39 -0.02 2.02 16 33 H 0.27 14.21 8.31 -92.71 -0.77 13.43 16 34 H 0.11 4.41 6.14 -2.91 -0.02 4.39 16 Total: -1.00 -60.85 274.98 6.15 -54.70 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 1.07 Total: 18.08 kcal Atomic # 6 Polarization: -43.06 SS G_CDS: 4.48 Total: -38.58 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -1.43 Total: -78.87 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -60.85 6.15 -54.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334266781.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.923 kcal (2) G-P(sol) polarization free energy of solvation -60.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds