Wall clock time and date at job start Thu Apr 9 2020 11:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38260 * 119.99853 * 2 1 4 4 C 1.38215 * 119.99927 * 179.74273 * 3 2 1 5 5 C 1.38253 * 119.99755 * 0.55090 * 4 3 2 6 6 C 1.38216 * 120.00360 * 359.70937 * 5 4 3 7 7 C 1.38204 * 120.00012 * 180.27560 * 2 1 3 8 8 C 1.50701 * 120.00347 * 0.02562 * 7 2 1 9 9 H 1.09003 * 109.46947 * 42.97636 * 8 7 2 10 10 C 1.52995 * 109.47518 * 162.97458 * 8 7 2 11 11 N 1.46497 * 109.47028 * 282.97770 * 8 7 2 12 12 C 1.46491 * 120.00030 * 305.14019 * 11 8 7 13 13 C 1.36943 * 119.99921 * 125.14579 * 11 8 7 14 14 H 1.07997 * 120.00188 * 21.03585 * 13 11 8 15 15 C 1.38809 * 119.99955 * 201.04434 * 13 11 8 16 16 N 1.31628 * 119.99846 * 18.53760 * 15 13 11 17 17 Si 1.86802 * 120.00217 * 198.54491 * 15 13 11 18 18 H 1.48493 * 109.47452 * 94.98441 * 17 15 13 19 19 H 1.48504 * 109.46881 * 214.98855 * 17 15 13 20 20 H 1.48501 * 109.46510 * 334.98423 * 17 15 13 21 21 H 1.08991 * 109.47405 * 269.72238 * 1 2 3 22 22 H 1.09004 * 109.47241 * 149.71980 * 1 2 3 23 23 H 1.09003 * 109.47163 * 29.72558 * 1 2 3 24 24 H 1.08000 * 119.99855 * 0.02562 * 3 2 1 25 25 H 1.07993 * 120.00213 * 180.28091 * 4 3 2 26 26 H 1.07999 * 120.00246 * 179.72240 * 5 4 3 27 27 H 1.07996 * 120.00352 * 179.97438 * 6 5 4 28 28 H 1.09001 * 109.47599 * 300.00398 * 10 8 7 29 29 H 1.09003 * 109.46866 * 60.00128 * 10 8 7 30 30 H 1.08997 * 109.47671 * 180.02562 * 10 8 7 31 31 H 1.09004 * 109.47484 * 94.44606 * 12 11 8 32 32 H 1.09005 * 109.47433 * 214.44479 * 12 11 8 33 33 H 1.08996 * 109.47458 * 334.44782 * 12 11 8 34 34 H 0.97002 * 119.99766 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0054 5 6 4.2717 0.0001 -0.0008 6 6 3.5807 -1.1969 -0.0062 7 6 2.1980 -1.1969 -0.0058 8 6 1.4446 -2.5020 -0.0126 9 1 0.6120 -2.4372 -0.7132 10 6 2.3842 -3.6312 -0.4403 11 7 0.9313 -2.7766 1.3317 12 6 1.8469 -2.7981 2.4751 13 6 -0.4044 -3.0133 1.5196 14 1 -1.0179 -3.3331 0.6904 15 6 -0.9697 -2.8419 2.7757 16 7 -0.3471 -2.1220 3.6849 17 14 -2.6138 -3.6332 3.1759 18 1 -2.3850 -4.9380 3.8468 19 1 -3.3858 -2.7413 4.0780 20 1 -3.3776 -3.8491 1.9208 21 1 -0.3634 -0.0050 1.0276 22 1 -0.3634 -0.8875 -0.5182 23 1 -0.3634 0.8925 -0.5096 24 1 1.6582 2.1327 0.0004 25 1 4.1204 2.1326 0.0100 26 1 5.3516 0.0001 -0.0011 27 1 4.1206 -2.1322 -0.0114 28 1 2.7662 -3.4269 -1.4405 29 1 3.2168 -3.6959 0.2603 30 1 1.8392 -4.5751 -0.4457 31 1 1.8559 -1.8179 2.9519 32 1 1.5145 -3.5482 3.1928 33 1 2.8516 -3.0442 2.1315 34 1 -0.7420 -2.0026 4.5628 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334350206.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:13 Heat of formation + Delta-G solvation = 42.311057 kcal Electronic energy + Delta-G solvation = -15258.573352 eV Core-core repulsion = 12963.917899 eV Total energy + Delta-G solvation = -2294.655453 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.11191 -35.82283 -32.58547 -32.05807 -29.98629 -28.21314 -26.21685 -25.77405 -23.98426 -21.83649 -20.67435 -18.99404 -16.78426 -15.92177 -15.04273 -14.75974 -14.12269 -13.90716 -13.30572 -12.96152 -12.66482 -12.42252 -12.16116 -11.71639 -11.48865 -11.30680 -11.14947 -10.89164 -10.77673 -10.69227 -10.38800 -10.20506 -10.11813 -9.81077 -9.63115 -8.50997 -8.18709 -7.89143 -6.73343 -5.70245 -3.11869 2.00709 2.02439 3.39268 3.46695 3.47401 4.35286 4.56936 5.37919 5.41197 5.46372 5.56814 5.61462 5.68618 5.95384 5.96822 6.09580 6.22546 6.29491 6.41709 6.47976 6.61724 6.66961 6.79480 6.82821 6.92317 7.06427 7.09218 7.15120 7.39159 7.50003 7.67833 7.78618 7.83437 8.40850 9.25024 9.89931 10.40259 11.33590 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.035736 B = 0.009723 C = 0.008918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.330246 B = 2879.074330 C = 3139.117830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.058 4.058 3 C -0.130 4.130 4 C -0.134 4.134 5 C -0.137 4.137 6 C -0.118 4.118 7 C -0.077 4.077 8 C 0.202 3.798 9 H 0.072 0.928 10 C -0.162 4.162 11 N -0.583 5.583 12 C 0.165 3.835 13 C -0.250 4.250 14 H 0.068 0.932 15 C 0.003 3.997 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.289 1.289 19 H -0.293 1.293 20 H -0.279 1.279 21 H 0.085 0.915 22 H 0.068 0.932 23 H 0.044 0.956 24 H 0.111 0.889 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.118 0.882 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.027 0.973 32 H 0.038 0.962 33 H 0.000 1.000 34 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.770 2.979 -7.232 9.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.059 4.059 3 C -0.148 4.148 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.137 4.137 7 C -0.080 4.080 8 C 0.094 3.906 9 H 0.090 0.910 10 C -0.221 4.221 11 N -0.304 5.304 12 C 0.020 3.980 13 C -0.380 4.380 14 H 0.086 0.914 15 C -0.196 4.196 16 N -0.543 5.543 17 Si 0.729 3.271 18 H -0.217 1.217 19 H -0.219 1.219 20 H -0.205 1.205 21 H 0.104 0.896 22 H 0.087 0.913 23 H 0.063 0.937 24 H 0.129 0.871 25 H 0.127 0.873 26 H 0.127 0.873 27 H 0.135 0.865 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.019 0.981 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.684 2.992 -7.032 9.525 hybrid contribution -0.766 -0.232 0.547 0.970 sum 4.918 2.759 -6.485 8.594 Atomic orbital electron populations 1.20747 0.90987 1.00826 1.03671 1.19798 0.96416 0.92319 0.97372 1.20930 0.94121 0.97278 1.02462 1.20897 0.94289 0.97388 1.02697 1.20956 0.98904 0.92902 1.02794 1.21113 0.94157 0.97561 1.00882 1.20695 0.93498 0.96533 0.97232 1.19390 0.93899 0.88070 0.89225 0.90954 1.22345 1.00336 1.00128 0.99306 1.44027 1.04684 1.80697 1.01013 1.20684 0.88483 1.00038 0.88759 1.19203 0.85050 1.38310 0.95412 0.91393 1.24939 0.97725 0.98961 0.97954 1.70129 1.39387 1.39293 1.05492 0.86331 0.83820 0.78987 0.78005 1.21664 1.21950 1.20464 0.89649 0.91307 0.93728 0.87097 0.87274 0.87261 0.86458 0.93735 0.93032 0.92742 0.95456 0.94331 0.98145 0.93853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.06 9.57 36.01 0.34 -1.71 16 2 C -0.06 -1.15 5.88 -104.63 -0.62 -1.76 16 3 C -0.13 -2.27 9.70 -39.58 -0.38 -2.65 16 4 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 5 C -0.14 -2.22 10.05 -39.58 -0.40 -2.62 16 6 C -0.12 -2.10 9.11 -39.58 -0.36 -2.46 16 7 C -0.08 -1.52 4.68 -104.62 -0.49 -2.01 16 8 C 0.20 4.16 2.25 -69.09 -0.16 4.01 16 9 H 0.07 1.50 6.30 -51.93 -0.33 1.18 16 10 C -0.16 -2.87 8.13 37.16 0.30 -2.57 16 11 N -0.58 -14.28 2.77 -174.82 -0.49 -14.77 16 12 C 0.17 4.12 8.21 59.84 0.49 4.61 16 13 C -0.25 -6.64 9.56 -15.06 -0.14 -6.78 16 14 H 0.07 1.77 7.87 -52.49 -0.41 1.36 16 15 C 0.00 0.09 4.98 -17.43 -0.09 0.00 16 16 N -0.90 -25.92 10.93 55.49 0.61 -25.31 16 17 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H 0.08 1.95 8.14 -51.93 -0.42 1.52 16 22 H 0.07 1.36 6.19 -51.93 -0.32 1.04 16 23 H 0.04 0.73 8.08 -51.93 -0.42 0.31 16 24 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 25 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 26 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 27 H 0.12 1.92 5.96 -52.49 -0.31 1.61 16 28 H 0.04 0.68 8.13 -51.93 -0.42 0.26 16 29 H 0.05 0.90 5.54 -51.93 -0.29 0.62 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.03 0.75 7.42 -51.93 -0.39 0.37 16 32 H 0.04 1.03 7.31 -51.93 -0.38 0.65 16 33 H 0.00 0.00 6.73 -51.93 -0.35 -0.35 16 34 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 275.08 15.07 4.15 4.15 Total: -1.00 -28.67 275.08 -7.52 -36.19 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -4.87 Total: -0.35 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -1.89 Total: -16.51 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.12 Total: -40.08 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.67 -7.52 -36.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334350206.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.504 kcal (2) G-P(sol) polarization free energy of solvation -28.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds