Wall clock time and date at job start Thu Apr 9 2020 11:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47140 * 2 1 4 4 C 1.36845 * 120.00559 * 94.82859 * 3 2 1 5 5 H 1.08001 * 120.00317 * 214.41428 * 4 3 2 6 6 C 1.38794 * 119.99689 * 34.13979 * 4 3 2 7 7 N 1.31594 * 120.00130 * 22.27399 * 6 4 3 8 8 Si 1.86805 * 120.00048 * 202.27576 * 6 4 3 9 9 H 1.48506 * 109.46969 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47163 * 119.99795 * 8 6 4 11 11 H 1.48499 * 109.47081 * 240.00141 * 8 6 4 12 12 C 1.39301 * 119.99608 * 274.83066 * 3 2 1 13 13 C 1.39086 * 120.09084 * 359.72086 * 12 3 2 14 14 C 1.38051 * 119.90765 * 179.77190 * 13 12 3 15 15 C 1.50694 * 119.95147 * 180.25443 * 14 13 12 16 16 C 1.38331 * 120.09062 * 0.48407 * 14 13 12 17 17 C 1.38325 * 120.17847 * 359.79210 * 16 14 13 18 18 C 1.50706 * 119.95552 * 179.97438 * 17 16 14 19 19 C 1.38048 * 120.09381 * 359.95515 * 17 16 14 20 20 H 1.09003 * 109.47198 * 60.00473 * 1 2 3 21 21 H 1.09004 * 109.46874 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47488 * 300.00367 * 1 2 3 23 23 H 1.08996 * 109.47488 * 239.99633 * 2 1 3 24 24 H 1.09003 * 109.47198 * 119.99527 * 2 1 3 25 25 H 0.97003 * 119.99637 * 179.97438 * 7 6 4 26 26 H 1.07996 * 120.04139 * 0.02562 * 13 12 3 27 27 H 1.09001 * 109.46997 * 270.22994 * 15 14 13 28 28 H 1.09001 * 109.47569 * 30.23091 * 15 14 13 29 29 H 1.09003 * 109.47455 * 150.23168 * 15 14 13 30 30 H 1.08000 * 119.90513 * 179.76935 * 16 14 13 31 31 H 1.09004 * 109.46948 * 269.97886 * 18 17 16 32 32 H 1.09000 * 109.46818 * 29.97149 * 18 17 16 33 33 H 1.08994 * 109.47479 * 149.97799 * 18 17 16 34 34 H 1.08000 * 120.04943 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3405 1.9931 1.1808 5 1 2.1631 3.0510 1.3069 6 6 2.8899 1.2531 2.2186 7 7 3.5009 0.1158 1.9641 8 14 2.7620 1.8717 3.9766 9 1 2.0322 3.1649 3.9945 10 1 2.0266 0.8776 4.7988 11 1 4.1248 2.0641 4.5341 12 6 2.1547 2.0717 -1.2021 13 6 1.8333 1.4496 -2.4039 14 6 1.9653 2.1390 -3.5927 15 6 1.6119 1.4679 -4.8948 16 6 2.4261 3.4433 -3.5905 17 6 2.7523 4.0636 -2.3980 18 6 3.2544 5.4845 -2.4015 19 6 2.6181 3.3830 -1.2044 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.8852 -0.4012 2.6894 26 1 1.4770 0.4301 -2.4067 27 1 2.4923 0.9651 -5.2951 28 1 0.8220 0.7365 -4.7241 29 1 1.2658 2.2167 -5.6074 30 1 2.5319 3.9785 -4.5226 31 1 4.3410 5.4857 -2.4885 32 1 2.8218 6.0206 -3.2463 33 1 2.9638 5.9750 -1.4726 34 1 2.8734 3.8678 -0.2738 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334438769.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:22 Heat of formation + Delta-G solvation = 18.419465 kcal Electronic energy + Delta-G solvation = -14840.954632 eV Core-core repulsion = 12545.263162 eV Total energy + Delta-G solvation = -2295.691470 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.72503 -36.11345 -32.71701 -32.16157 -30.68140 -28.55561 -26.40717 -25.79722 -24.40185 -22.08499 -20.03055 -19.25527 -16.94214 -16.05695 -14.85114 -14.68862 -14.23727 -13.53650 -13.29458 -13.14888 -12.65894 -12.57219 -12.43926 -11.94962 -11.87401 -11.73148 -11.34509 -11.17167 -11.01397 -10.75615 -10.51622 -10.39516 -10.24082 -10.04086 -9.66480 -9.13885 -8.31604 -7.56395 -6.59751 -6.14085 -3.82002 2.48038 2.70457 3.16197 3.21602 3.26113 4.10247 4.72527 4.97393 5.11477 5.59745 5.68422 5.91072 5.96302 6.04314 6.08267 6.16588 6.20937 6.29459 6.34058 6.35810 6.41782 6.50804 6.63844 6.68052 6.91786 7.06519 7.20201 7.33553 7.45472 7.59178 7.65513 7.74332 8.00627 8.25994 8.72889 9.36834 9.74802 10.66230 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.029420 B = 0.009663 C = 0.007803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.508516 B = 2896.829807 C = 3587.311243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 N -0.447 5.447 4 C -0.306 4.306 5 H 0.088 0.912 6 C 0.031 3.969 7 N -0.865 5.865 8 Si 0.914 3.086 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.282 1.282 12 C 0.225 3.775 13 C -0.238 4.238 14 C -0.041 4.041 15 C -0.106 4.106 16 C -0.234 4.234 17 C -0.042 4.042 18 C -0.106 4.106 19 C -0.210 4.210 20 H 0.045 0.955 21 H 0.046 0.954 22 H 0.053 0.947 23 H 0.046 0.954 24 H 0.108 0.892 25 H 0.267 0.733 26 H 0.105 0.895 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.928 2.406 -5.695 6.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.016 4.016 3 N -0.134 5.134 4 C -0.435 4.435 5 H 0.105 0.895 6 C -0.174 4.174 7 N -0.502 5.502 8 Si 0.741 3.259 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.208 1.208 12 C 0.110 3.890 13 C -0.262 4.262 14 C -0.042 4.042 15 C -0.163 4.163 16 C -0.256 4.256 17 C -0.043 4.043 18 C -0.163 4.163 19 C -0.234 4.234 20 H 0.064 0.936 21 H 0.065 0.935 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.126 0.874 25 H 0.077 0.923 26 H 0.123 0.877 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.854 2.079 -5.282 6.354 hybrid contribution 0.023 0.114 0.926 0.934 sum -2.831 2.193 -4.356 5.639 Atomic orbital electron populations 1.22186 0.98583 0.99967 1.01476 1.21469 0.91488 0.85050 1.03585 1.42461 1.57846 1.11003 1.02123 1.19388 1.39343 0.95505 0.89245 0.89488 1.25333 0.94821 0.96789 1.00426 1.70020 1.32226 1.15306 1.32599 0.86061 0.78111 0.79088 0.82637 1.19248 1.20606 1.20773 1.18135 0.92564 0.92053 0.86279 1.20262 1.14920 0.99846 0.91147 1.19325 0.97191 0.93893 0.93742 1.20691 1.00724 0.99751 0.95100 1.20093 1.13462 0.95888 0.96171 1.19417 0.97065 0.94705 0.93116 1.20696 1.00416 0.93751 1.01437 1.20354 1.11091 0.94817 0.97149 0.93596 0.93485 0.92836 0.93555 0.87392 0.92300 0.87669 0.92181 0.92507 0.92557 0.88601 0.92130 0.92643 0.92328 0.86719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 10.17 37.16 0.38 -2.85 16 2 C 0.11 2.51 5.32 -4.04 -0.02 2.48 16 3 N -0.45 -11.32 2.66 -113.13 -0.30 -11.62 16 4 C -0.31 -8.10 8.58 -15.11 -0.13 -8.23 16 5 H 0.09 2.28 6.71 -52.49 -0.35 1.93 16 6 C 0.03 0.79 4.92 -17.45 -0.09 0.71 16 7 N -0.87 -23.31 11.35 55.49 0.63 -22.68 16 8 Si 0.91 20.08 29.61 -169.99 -5.03 15.05 16 9 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 C 0.22 5.43 6.50 -83.84 -0.54 4.89 16 13 C -0.24 -5.20 8.53 -39.34 -0.34 -5.54 16 14 C -0.04 -0.80 5.88 -104.66 -0.61 -1.41 16 15 C -0.11 -1.62 10.01 36.00 0.36 -1.26 16 16 C -0.23 -4.56 9.35 -39.52 -0.37 -4.93 16 17 C -0.04 -0.85 5.88 -104.66 -0.61 -1.46 16 18 C -0.11 -1.71 10.01 36.01 0.36 -1.35 16 19 C -0.21 -4.86 8.91 -39.34 -0.35 -5.21 16 20 H 0.04 0.89 7.77 -51.93 -0.40 0.48 16 21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 23 H 0.05 1.04 6.46 -51.93 -0.34 0.70 16 24 H 0.11 2.72 5.35 -51.93 -0.28 2.44 16 25 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 26 H 0.11 2.20 6.16 -52.49 -0.32 1.88 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 29 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 30 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 34 H 0.11 2.70 6.39 -52.49 -0.34 2.37 16 LS Contribution 279.09 15.07 4.21 4.21 Total: -1.00 -27.70 279.09 -7.42 -35.12 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -4.96 Total: 4.08 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: -1.97 Total: -24.15 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.33 Total: -34.30 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.70 -7.42 -35.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334438769.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.541 kcal (2) G-P(sol) polarization free energy of solvation -27.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds