Wall clock time and date at job start Thu Apr 9 2020 11:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47140 * 2 1 4 4 C 1.36845 * 120.00559 * 94.82859 * 3 2 1 5 5 H 1.08001 * 120.00317 * 214.41428 * 4 3 2 6 6 C 1.38794 * 119.99689 * 34.13979 * 4 3 2 7 7 N 1.31594 * 120.00130 * 22.27399 * 6 4 3 8 8 Si 1.86805 * 120.00048 * 202.27576 * 6 4 3 9 9 H 1.48506 * 109.46969 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47163 * 119.99795 * 8 6 4 11 11 H 1.48499 * 109.47081 * 240.00141 * 8 6 4 12 12 C 1.39301 * 119.99608 * 274.83066 * 3 2 1 13 13 C 1.39086 * 120.09084 * 359.72086 * 12 3 2 14 14 C 1.38051 * 119.90765 * 179.77190 * 13 12 3 15 15 C 1.50694 * 119.95147 * 180.25443 * 14 13 12 16 16 C 1.38331 * 120.09062 * 0.48407 * 14 13 12 17 17 C 1.38325 * 120.17847 * 359.79210 * 16 14 13 18 18 C 1.50706 * 119.95552 * 179.97438 * 17 16 14 19 19 C 1.38048 * 120.09381 * 359.95515 * 17 16 14 20 20 H 1.09003 * 109.47198 * 60.00473 * 1 2 3 21 21 H 1.09004 * 109.46874 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47488 * 300.00367 * 1 2 3 23 23 H 1.08996 * 109.47488 * 239.99633 * 2 1 3 24 24 H 1.09003 * 109.47198 * 119.99527 * 2 1 3 25 25 H 0.97003 * 119.99637 * 179.97438 * 7 6 4 26 26 H 1.07996 * 120.04139 * 0.02562 * 13 12 3 27 27 H 1.09001 * 109.46997 * 270.22994 * 15 14 13 28 28 H 1.09001 * 109.47569 * 30.23091 * 15 14 13 29 29 H 1.09003 * 109.47455 * 150.23168 * 15 14 13 30 30 H 1.08000 * 119.90513 * 179.76935 * 16 14 13 31 31 H 1.09004 * 109.46948 * 269.97886 * 18 17 16 32 32 H 1.09000 * 109.46818 * 29.97149 * 18 17 16 33 33 H 1.08994 * 109.47479 * 149.97799 * 18 17 16 34 34 H 1.08000 * 120.04943 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3405 1.9931 1.1808 5 1 2.1631 3.0510 1.3069 6 6 2.8899 1.2531 2.2186 7 7 3.5009 0.1158 1.9641 8 14 2.7620 1.8717 3.9766 9 1 2.0322 3.1649 3.9945 10 1 2.0266 0.8776 4.7988 11 1 4.1248 2.0641 4.5341 12 6 2.1547 2.0717 -1.2021 13 6 1.8333 1.4496 -2.4039 14 6 1.9653 2.1390 -3.5927 15 6 1.6119 1.4679 -4.8948 16 6 2.4261 3.4433 -3.5905 17 6 2.7523 4.0636 -2.3980 18 6 3.2544 5.4845 -2.4015 19 6 2.6181 3.3830 -1.2044 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.8852 -0.4012 2.6894 26 1 1.4770 0.4301 -2.4067 27 1 2.4923 0.9651 -5.2951 28 1 0.8220 0.7365 -4.7241 29 1 1.2658 2.2167 -5.6074 30 1 2.5319 3.9785 -4.5226 31 1 4.3410 5.4857 -2.4885 32 1 2.8218 6.0206 -3.2463 33 1 2.9638 5.9750 -1.4726 34 1 2.8734 3.8678 -0.2738 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334438769.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:21 Heat of formation + Delta-G solvation = 5.108666 kcal Electronic energy + Delta-G solvation = -14841.531832 eV Core-core repulsion = 12545.263162 eV Total energy + Delta-G solvation = -2296.268670 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.40683 -37.84130 -34.27147 -33.97744 -32.33954 -30.25127 -27.85186 -27.35392 -26.22592 -23.79144 -21.70929 -20.88952 -18.79392 -17.84343 -16.69053 -16.34919 -15.92673 -15.18994 -14.82994 -14.71231 -14.21545 -14.02222 -13.86645 -13.66285 -13.38932 -13.16304 -12.93094 -12.83440 -12.56195 -12.39872 -12.22249 -12.11075 -11.86587 -11.73855 -11.34899 -10.95384 -10.11586 -9.17910 -8.49915 -7.99230 -5.80263 0.82893 1.03713 1.40345 1.42712 1.53126 2.28673 2.88629 3.23295 3.33232 4.20508 4.20997 4.31601 4.56899 4.62193 4.63288 4.72974 4.75229 4.89941 4.90382 4.95582 4.96182 5.01078 5.12102 5.17853 5.22356 5.38633 5.46250 5.56324 5.62726 5.90974 5.99197 6.10787 6.18545 6.55446 6.82682 7.51335 7.86017 8.73400 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.029420 B = 0.009663 C = 0.007803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.508516 B = 2896.829807 C = 3587.311243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.110 3.890 3 N -0.472 5.472 4 C -0.322 4.322 5 H 0.076 0.924 6 C -0.012 4.012 7 N -0.898 5.898 8 Si 0.979 3.021 9 H -0.265 1.265 10 H -0.274 1.274 11 H -0.280 1.280 12 C 0.198 3.802 13 C -0.252 4.252 14 C -0.042 4.042 15 C -0.103 4.103 16 C -0.231 4.231 17 C -0.044 4.044 18 C -0.104 4.104 19 C -0.242 4.242 20 H 0.047 0.953 21 H 0.076 0.924 22 H 0.041 0.959 23 H 0.045 0.955 24 H 0.085 0.915 25 H 0.268 0.732 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.130 0.870 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.418 3.241 -7.480 8.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 N -0.162 5.162 4 C -0.451 4.451 5 H 0.093 0.907 6 C -0.213 4.213 7 N -0.536 5.536 8 Si 0.803 3.197 9 H -0.189 1.189 10 H -0.199 1.199 11 H -0.206 1.206 12 C 0.086 3.914 13 C -0.276 4.276 14 C -0.042 4.042 15 C -0.160 4.160 16 C -0.252 4.252 17 C -0.045 4.045 18 C -0.161 4.161 19 C -0.266 4.266 20 H 0.066 0.934 21 H 0.095 0.905 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.078 0.922 26 H 0.126 0.874 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.148 0.852 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.351 2.932 -7.105 8.385 hybrid contribution 0.199 -0.073 1.264 1.281 sum -3.153 2.860 -5.841 7.227 Atomic orbital electron populations 1.22044 0.96135 1.01703 1.00896 1.21417 0.93461 0.84251 1.02259 1.42583 1.59778 1.11681 1.02206 1.19481 1.39737 0.95365 0.90469 0.90677 1.26089 0.94383 0.97051 1.03784 1.70115 1.33426 1.16505 1.33567 0.85084 0.77953 0.78639 0.77990 1.18929 1.19938 1.20616 1.18583 0.93287 0.92679 0.86897 1.20463 1.15471 1.00312 0.91357 1.19887 0.95396 0.94133 0.94825 1.20751 1.01692 1.00459 0.93059 1.20584 1.11533 0.95934 0.97113 1.19904 0.95704 0.96540 0.92335 1.20752 1.01207 0.91304 1.02792 1.20457 1.13148 0.95151 0.97829 0.93389 0.90511 0.94020 0.93680 0.89734 0.92229 0.87367 0.90766 0.91645 0.90114 0.85188 0.90898 0.89855 0.92233 0.88619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.91 10.17 71.98 0.73 -5.18 16 2 C 0.11 5.25 5.32 86.38 0.46 5.71 16 3 N -0.47 -24.80 2.66 -511.85 -1.36 -26.16 16 4 C -0.32 -17.73 8.58 84.04 0.72 -17.01 16 5 H 0.08 4.17 6.71 -2.91 -0.02 4.15 16 6 C -0.01 -0.65 4.92 84.86 0.42 -0.24 16 7 N -0.90 -50.03 11.35 21.65 0.25 -49.78 16 8 Si 0.98 42.29 29.61 68.60 2.03 44.32 16 9 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 12 C 0.20 9.80 6.50 38.36 0.25 10.04 16 13 C -0.25 -10.94 8.53 22.43 0.19 -10.74 16 14 C -0.04 -1.53 5.88 -19.89 -0.12 -1.64 16 15 C -0.10 -2.75 10.01 71.23 0.71 -2.04 16 16 C -0.23 -8.25 9.35 22.31 0.21 -8.04 16 17 C -0.04 -1.71 5.88 -19.89 -0.12 -1.83 16 18 C -0.10 -3.08 10.01 71.24 0.71 -2.37 16 19 C -0.24 -11.41 8.91 22.43 0.20 -11.21 16 20 H 0.05 1.84 7.77 -2.39 -0.02 1.82 16 21 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 22 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.04 2.08 6.46 -2.39 -0.02 2.06 16 24 H 0.08 4.43 5.35 -2.39 -0.01 4.42 16 25 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 26 H 0.11 4.51 6.16 -2.91 -0.02 4.49 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.06 1.65 8.09 -2.39 -0.02 1.63 16 29 H 0.08 1.78 8.09 -2.39 -0.02 1.77 16 30 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 31 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.08 2.01 8.08 -2.39 -0.02 1.99 16 33 H 0.06 1.74 8.08 -2.39 -0.02 1.72 16 34 H 0.10 4.75 6.39 -2.91 -0.02 4.73 16 Total: -1.00 -61.21 279.09 6.35 -54.85 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 1.07 Total: 21.32 kcal Atomic # 6 Polarization: -48.92 SS G_CDS: 4.37 Total: -44.55 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -1.12 Total: -75.94 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -61.21 6.35 -54.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334438769.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.962 kcal (2) G-P(sol) polarization free energy of solvation -61.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds