Wall clock time and date at job start Thu Apr 9 2020 11:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38263 * 119.99943 * 2 1 4 4 C 1.38206 * 120.00019 * 180.23560 * 3 2 1 5 5 C 1.38264 * 119.99979 * 359.80345 * 4 3 2 6 6 C 1.38214 * 119.99845 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.99660 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.47008 * 171.39360 * 7 6 5 9 9 C 1.52996 * 109.47661 * 291.39551 * 7 6 5 10 10 N 1.46502 * 109.47547 * 51.39648 * 7 6 5 11 11 C 1.46502 * 119.99690 * 295.62460 * 10 7 6 12 12 C 1.36930 * 120.00367 * 115.61563 * 10 7 6 13 13 H 1.08002 * 120.00215 * 323.71355 * 12 10 7 14 14 C 1.38817 * 120.00344 * 143.71025 * 12 10 7 15 15 N 1.31621 * 120.00045 * 157.39058 * 14 12 10 16 16 Si 1.86800 * 119.99667 * 337.39633 * 14 12 10 17 17 H 1.48500 * 109.46936 * 95.24920 * 16 14 12 18 18 H 1.48497 * 109.47027 * 215.24821 * 16 14 12 19 19 H 1.48499 * 109.47208 * 335.24762 * 16 14 12 20 20 C 1.38213 * 120.00192 * 179.80466 * 2 1 3 21 21 H 1.08999 * 109.47244 * 270.19101 * 1 2 3 22 22 H 1.08998 * 109.47088 * 30.19891 * 1 2 3 23 23 H 1.09008 * 109.46886 * 150.19102 * 1 2 3 24 24 H 1.08002 * 119.99899 * 0.02562 * 3 2 1 25 25 H 1.08000 * 120.00228 * 179.79122 * 4 3 2 26 26 H 1.08000 * 119.99950 * 179.97438 * 5 4 3 27 27 H 1.08995 * 109.47642 * 180.02562 * 9 7 6 28 28 H 1.09006 * 109.46816 * 300.00257 * 9 7 6 29 29 H 1.09004 * 109.47066 * 59.99844 * 9 7 6 30 30 H 1.08997 * 109.47589 * 86.56769 * 11 10 7 31 31 H 1.09002 * 109.47066 * 206.57106 * 11 10 7 32 32 H 1.09002 * 109.46935 * 326.56705 * 11 10 7 33 33 H 0.96993 * 119.99582 * 179.97438 * 15 14 12 34 34 H 1.07994 * 119.99859 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0049 5 6 4.2717 0.0000 -0.0057 6 6 3.5806 -1.1969 -0.0022 7 6 4.3341 -2.5019 -0.0036 8 1 3.6364 -3.3245 0.1534 9 6 5.0401 -2.6818 -1.3490 10 7 5.3285 -2.4930 1.0722 11 6 6.4380 -1.5370 1.0362 12 6 5.2209 -3.3781 2.1115 13 1 4.2469 -3.6477 2.4926 14 6 6.3635 -3.9290 2.6753 15 7 6.3291 -4.4021 3.9030 16 14 7.9499 -3.9986 1.6915 17 1 8.7901 -2.8198 2.0230 18 1 8.6874 -5.2426 2.0288 19 1 7.6335 -3.9887 0.2406 20 6 2.1981 -1.1969 0.0041 21 1 -0.3634 0.0034 1.0276 22 1 -0.3633 0.8882 -0.5169 23 1 -0.3633 -0.8918 -0.5109 24 1 1.6583 2.1327 0.0004 25 1 4.1204 2.1327 -0.0083 26 1 5.3517 0.0001 -0.0100 27 1 5.5848 -3.6259 -1.3502 28 1 4.3003 -2.6885 -2.1495 29 1 5.7379 -1.8592 -1.5060 30 1 6.1241 -0.5986 1.4934 31 1 7.2861 -1.9437 1.5870 32 1 6.7294 -1.3573 0.0013 33 1 7.1275 -4.7873 4.2968 34 1 1.6581 -2.1322 0.0069 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335233437.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:26 Heat of formation + Delta-G solvation = 28.978776 kcal Electronic energy + Delta-G solvation = -14897.588494 eV Core-core repulsion = 12602.354910 eV Total energy + Delta-G solvation = -2295.233584 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.54347 -37.96290 -34.59628 -33.19317 -32.47961 -30.15589 -28.52089 -27.30960 -25.70924 -23.42254 -22.60805 -20.47401 -18.99465 -17.63973 -17.06288 -16.30539 -16.09790 -15.40902 -15.17379 -14.62124 -14.54155 -14.38169 -14.06243 -13.76240 -13.34923 -13.19554 -12.94318 -12.83921 -12.53043 -12.39694 -12.16777 -12.07648 -11.72775 -11.54421 -11.47923 -10.63021 -9.59876 -9.35091 -8.81078 -8.21880 -5.58789 0.58017 0.59519 1.29615 1.40672 1.53008 2.41115 2.90504 3.06177 3.42194 3.89998 4.07502 4.15744 4.34050 4.37840 4.49159 4.53167 4.62367 4.65861 4.80664 4.82964 4.87244 4.94327 4.98312 5.06022 5.13206 5.27063 5.33420 5.43230 5.67921 5.76940 5.88347 5.91526 6.15581 6.26372 6.95127 7.60491 8.02705 8.98173 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.040916 B = 0.008281 C = 0.007918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.163478 B = 3380.333910 C = 3535.474514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.096 4.096 3 C -0.136 4.136 4 C -0.124 4.124 5 C -0.138 4.138 6 C -0.089 4.089 7 C 0.199 3.801 8 H 0.061 0.939 9 C -0.150 4.150 10 N -0.611 5.611 11 C 0.104 3.896 12 C -0.261 4.261 13 H 0.037 0.963 14 C -0.023 4.023 15 N -0.950 5.950 16 Si 0.951 3.049 17 H -0.275 1.275 18 H -0.309 1.309 19 H -0.254 1.254 20 C -0.136 4.136 21 H 0.071 0.929 22 H 0.083 0.917 23 H 0.070 0.930 24 H 0.144 0.856 25 H 0.140 0.860 26 H 0.125 0.875 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.026 0.974 31 H 0.028 0.972 32 H 0.064 0.936 33 H 0.263 0.737 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.785 10.808 -11.896 17.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.096 4.096 3 C -0.154 4.154 4 C -0.141 4.141 5 C -0.156 4.156 6 C -0.091 4.091 7 C 0.093 3.907 8 H 0.080 0.920 9 C -0.209 4.209 10 N -0.334 5.334 11 C -0.040 4.040 12 C -0.390 4.390 13 H 0.055 0.945 14 C -0.219 4.219 15 N -0.595 5.595 16 Si 0.779 3.221 17 H -0.202 1.202 18 H -0.237 1.237 19 H -0.178 1.178 20 C -0.154 4.154 21 H 0.089 0.911 22 H 0.101 0.899 23 H 0.089 0.911 24 H 0.161 0.839 25 H 0.158 0.842 26 H 0.143 0.857 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.704 10.724 -11.784 17.286 hybrid contribution 0.933 -0.562 0.332 1.138 sum -5.771 10.162 -11.452 16.362 Atomic orbital electron populations 1.20796 0.89336 1.03641 1.02704 1.20224 0.97461 0.92765 0.99199 1.21272 0.94208 0.98084 1.01800 1.21399 0.94918 0.98015 0.99814 1.21437 1.00724 0.92417 1.00997 1.20649 0.94333 0.96304 0.97787 1.19567 0.90252 0.92843 0.88063 0.92042 1.22146 1.00859 1.01314 0.96562 1.44125 1.28596 1.37337 1.23377 1.21567 0.90114 0.92688 0.99616 1.18671 0.92844 1.19645 1.07880 0.94513 1.26083 1.01775 0.97466 0.96605 1.70010 1.30576 1.44877 1.13995 0.85767 0.79763 0.75660 0.80897 1.20219 1.23739 1.17802 1.21092 0.93460 0.98407 1.02479 0.91063 0.89856 0.91145 0.83872 0.84225 0.85744 0.93558 0.90765 0.92284 0.95590 0.95371 0.91814 0.92763 0.86374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 10.01 71.24 0.71 -1.43 16 2 C -0.10 -2.63 5.88 -19.86 -0.12 -2.75 16 3 C -0.14 -3.46 9.70 22.27 0.22 -3.25 16 4 C -0.12 -3.42 10.05 22.27 0.22 -3.20 16 5 C -0.14 -4.57 8.22 22.27 0.18 -4.39 16 6 C -0.09 -3.22 4.95 -19.87 -0.10 -3.32 16 7 C 0.20 8.02 3.03 44.24 0.13 8.16 16 8 H 0.06 2.62 7.66 -2.38 -0.02 2.61 16 9 C -0.15 -5.07 8.96 71.98 0.64 -4.42 16 10 N -0.61 -29.46 2.38 -706.98 -1.68 -31.14 16 11 C 0.10 4.47 7.26 127.77 0.93 5.40 16 12 C -0.26 -15.25 9.84 84.04 0.83 -14.43 16 13 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 14 C -0.02 -1.37 5.29 84.86 0.45 -0.93 16 15 N -0.95 -60.58 13.97 21.65 0.30 -60.28 16 16 Si 0.95 46.81 25.01 68.60 1.72 48.52 16 17 H -0.27 -12.87 6.65 99.48 0.66 -12.21 16 18 H -0.31 -15.36 7.11 99.48 0.71 -14.66 16 19 H -0.25 -11.79 7.11 99.48 0.71 -11.08 16 20 C -0.14 -4.43 9.32 22.27 0.21 -4.23 16 21 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.08 1.28 8.09 -2.39 -0.02 1.26 16 23 H 0.07 1.29 8.09 -2.38 -0.02 1.27 16 24 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 25 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 26 H 0.12 4.08 4.74 -2.91 -0.01 4.06 16 27 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 29 H 0.06 1.86 6.36 -2.38 -0.02 1.85 16 30 H 0.03 1.08 6.70 -2.39 -0.02 1.07 16 31 H 0.03 1.31 3.28 -2.39 -0.01 1.30 16 32 H 0.06 2.32 5.65 -2.39 -0.01 2.30 16 33 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 34 H 0.12 3.66 7.96 -2.91 -0.02 3.64 16 Total: -1.00 -67.70 270.18 5.68 -62.02 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 1.03 Total: 9.66 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 4.31 Total: -28.78 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -1.38 Total: -91.42 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.72 Total: 48.52 kcal Total: -67.70 5.68 -62.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335233437.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.999 kcal (2) G-P(sol) polarization free energy of solvation -67.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds