Wall clock time and date at job start Thu Apr 9 2020 11:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50695 * 109.47470 * 2 1 4 4 C 1.38662 * 120.75335 * 269.97960 * 3 2 1 5 5 C 1.38551 * 119.37160 * 180.02562 * 4 3 2 6 6 N 1.31529 * 120.91010 * 0.02562 * 5 4 3 7 7 C 1.32791 * 121.63113 * 359.65207 * 6 5 4 8 8 C 1.48005 * 119.73299 * 180.31975 * 7 6 5 9 9 O 1.21568 * 119.99673 * 180.31571 * 8 7 6 10 10 N 1.34769 * 120.00120 * 0.30914 * 8 7 6 11 11 C 1.36784 * 120.00240 * 180.02562 * 10 8 7 12 12 H 1.07997 * 119.99754 * 0.02562 * 11 10 8 13 13 C 1.39108 * 120.00319 * 180.02562 * 11 10 8 14 14 N 1.31315 * 120.00230 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99679 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47047 * 90.00112 * 15 13 11 17 17 H 1.48498 * 109.46998 * 209.99790 * 15 13 11 18 18 H 1.48494 * 109.47430 * 330.00028 * 15 13 11 19 19 C 1.38547 * 120.74961 * 90.00155 * 3 2 1 20 20 H 1.08996 * 109.47037 * 300.00258 * 1 2 3 21 21 H 1.09004 * 109.47183 * 59.99881 * 1 2 3 22 22 H 1.08999 * 109.47232 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.47458 * 240.00046 * 2 1 3 24 24 H 1.09003 * 109.47039 * 120.00653 * 2 1 3 25 25 H 1.07997 * 120.31476 * 359.97438 * 4 3 2 26 26 H 1.08003 * 119.54299 * 179.97438 * 5 4 3 27 27 H 0.97006 * 119.99998 * 0.02562 * 10 8 7 28 28 H 0.97003 * 120.00558 * 179.97438 * 14 13 11 29 29 H 1.08002 * 120.47023 * 359.97438 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2692 2.0891 -1.1916 5 6 2.7314 3.3948 -1.1582 6 7 2.9481 4.0057 -0.0138 7 6 2.7282 3.4041 1.1494 8 6 2.9797 4.1337 2.4123 9 8 2.7855 3.5856 3.4799 10 7 3.4241 5.4056 2.3788 11 6 3.6570 6.0798 3.5459 12 1 3.4851 5.5926 4.4944 13 6 4.1151 7.3928 3.5113 14 7 4.3382 8.0401 4.6318 15 14 4.4116 8.2355 1.8707 16 1 3.1683 8.9200 1.4341 17 1 5.5011 9.2339 2.0169 18 1 4.8011 7.2226 0.8571 19 6 2.2686 2.0886 1.1907 20 1 -0.3633 0.5139 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.0957 1.5963 -2.1368 26 1 2.9172 3.9178 -2.0847 27 1 3.5788 5.8430 1.5269 28 1 4.6581 8.9556 4.6077 29 1 2.0948 1.5985 2.1373 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335776735.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:30 Heat of formation + Delta-G solvation = -11.243496 kcal Electronic energy + Delta-G solvation = -14138.369782 eV Core-core repulsion = 11640.133024 eV Total energy + Delta-G solvation = -2498.236758 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.08858 -37.86530 -34.87174 -34.10442 -31.83115 -30.88844 -30.18781 -25.68423 -24.42330 -23.11803 -21.73925 -19.37398 -18.60338 -16.68362 -16.23953 -15.50379 -14.99983 -14.62219 -14.31172 -13.79076 -13.61152 -13.46347 -12.98338 -12.79168 -12.35304 -12.27399 -11.69744 -11.52599 -11.24081 -11.02675 -10.57816 -10.10029 -9.67821 -9.39978 -9.35431 -8.78696 -8.61424 -8.27362 -6.48643 -3.88778 1.09493 1.49142 3.05024 3.12708 3.14345 3.52041 4.03306 4.37180 4.42540 4.61391 4.73678 5.00879 5.19168 5.23140 5.25566 5.31935 5.45212 5.54444 5.74991 5.83810 5.95724 6.06770 6.09571 6.27833 6.52249 6.94252 7.44223 8.03223 8.16438 8.51244 8.81876 9.32096 9.79089 10.62128 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.047198 B = 0.007182 C = 0.006375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.107134 B = 3897.452746 C = 4390.870851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.047 4.047 4 C -0.180 4.180 5 C 0.100 3.900 6 N -0.481 5.481 7 C 0.117 3.883 8 C 0.474 3.526 9 O -0.582 6.582 10 N -0.546 5.546 11 C -0.298 4.298 12 H 0.125 0.875 13 C 0.046 3.954 14 N -0.860 5.860 15 Si 0.878 3.122 16 H -0.266 1.266 17 H -0.273 1.273 18 H -0.259 1.259 19 C -0.127 4.127 20 H 0.059 0.941 21 H 0.055 0.945 22 H 0.059 0.941 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.129 0.871 26 H 0.154 0.846 27 H 0.384 0.616 28 H 0.279 0.721 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.317 -10.662 -13.580 17.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.055 4.055 4 C -0.201 4.201 5 C -0.060 4.060 6 N -0.194 5.194 7 C -0.021 4.021 8 C 0.261 3.739 9 O -0.467 6.467 10 N -0.181 5.181 11 C -0.428 4.428 12 H 0.143 0.857 13 C -0.160 4.160 14 N -0.497 5.497 15 Si 0.703 3.297 16 H -0.191 1.191 17 H -0.198 1.198 18 H -0.184 1.184 19 C -0.149 4.149 20 H 0.078 0.922 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.147 0.853 26 H 0.171 0.829 27 H 0.219 0.781 28 H 0.089 0.911 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.051 -9.915 -12.690 16.606 hybrid contribution 0.019 0.006 -1.277 1.277 sum -4.032 -9.909 -13.967 17.594 Atomic orbital electron populations 1.21743 0.94391 1.01786 1.02519 1.20546 0.96423 0.91944 1.03182 1.20245 0.96020 0.96384 0.92880 1.22002 1.03268 0.96559 0.98281 1.22683 0.95199 0.92082 0.95989 1.67692 1.15416 1.38089 0.98167 1.21678 0.95575 0.92379 0.92462 1.17175 0.86996 0.82921 0.86776 1.90639 1.58689 1.67943 1.29460 1.42154 1.55308 1.11663 1.09017 1.19629 1.40575 0.95458 0.87128 0.85747 1.25166 0.96687 0.96271 0.97916 1.69585 1.41860 1.12005 1.26285 0.86646 0.79429 0.80436 0.83230 1.19127 1.19808 1.18391 1.21931 0.99141 0.94759 0.99021 0.92165 0.92573 0.92233 0.90780 0.90462 0.85258 0.82907 0.78081 0.91072 0.83917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.89 37.16 0.37 -1.00 15 2 C -0.08 -0.85 6.11 -27.89 -0.17 -1.02 15 3 C -0.05 -0.65 5.17 -104.35 -0.54 -1.19 15 4 C -0.18 -2.28 9.82 -39.31 -0.39 -2.66 15 5 C 0.10 1.45 11.18 -17.57 -0.20 1.25 15 6 N -0.48 -9.17 9.54 -9.81 -0.09 -9.26 15 7 C 0.12 2.45 6.75 -83.01 -0.56 1.88 15 8 C 0.47 12.08 7.76 -12.26 -0.10 11.99 15 9 O -0.58 -16.51 15.90 5.31 0.08 -16.42 15 10 N -0.55 -14.26 5.07 -11.80 -0.06 -14.32 15 11 C -0.30 -8.65 10.16 -15.02 -0.15 -8.80 15 12 H 0.12 4.02 7.38 -52.49 -0.39 3.63 15 13 C 0.05 1.27 5.50 -17.45 -0.10 1.17 15 14 N -0.86 -24.73 13.95 55.50 0.77 -23.96 15 15 Si 0.88 19.87 27.74 -169.99 -4.72 15.15 15 16 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 17 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 18 H -0.26 -5.62 6.52 56.52 0.37 -5.25 15 19 C -0.13 -2.24 9.34 -39.03 -0.36 -2.61 15 20 H 0.06 0.63 8.14 -51.93 -0.42 0.21 15 21 H 0.06 0.50 8.14 -51.93 -0.42 0.08 15 22 H 0.06 0.45 8.14 -51.93 -0.42 0.02 15 23 H 0.07 0.62 8.10 -51.93 -0.42 0.20 15 24 H 0.08 0.77 8.10 -51.93 -0.42 0.35 15 25 H 0.13 1.18 8.06 -52.49 -0.42 0.76 15 26 H 0.15 1.69 8.06 -52.48 -0.42 1.26 15 27 H 0.38 9.29 5.09 -40.82 -0.21 9.08 15 28 H 0.28 7.33 8.31 -40.82 -0.34 6.99 15 29 H 0.14 2.52 7.64 -52.49 -0.40 2.12 15 LS Contribution 259.76 15.07 3.91 3.91 Total: -1.00 -32.14 259.76 -5.41 -37.55 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -3.12 Total: 8.33 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -2.19 Total: -0.99 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.62 Total: -47.54 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.08 Total: -16.42 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.72 Total: 15.15 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.14 -5.41 -37.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335776735.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.304 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds