Wall clock time and date at job start Thu Apr 9 2020 11:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 84.72207 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47294 * 90.00155 * 9 7 5 11 11 H 1.48499 * 109.47218 * 210.00015 * 9 7 5 12 12 H 1.48496 * 109.47166 * 329.99846 * 9 7 5 13 13 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 14 14 H 1.08994 * 109.46839 * 60.00381 * 13 2 1 15 15 C 1.53002 * 109.46769 * 179.97438 * 13 2 1 16 16 C 1.50693 * 109.47013 * 300.00008 * 13 2 1 17 17 C 1.38234 * 120.00169 * 299.72371 * 16 13 2 18 18 C 1.38239 * 120.00102 * 179.79153 * 17 16 13 19 19 C 1.38231 * 119.99788 * 0.44017 * 18 17 16 20 20 C 1.38240 * 120.00007 * 359.81954 * 19 18 17 21 21 C 1.38225 * 120.00168 * 359.96944 * 20 19 18 22 22 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 24 24 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 25 25 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 26 26 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 27 27 H 1.09003 * 109.46657 * 179.97438 * 15 13 2 28 28 H 1.08994 * 109.47387 * 300.00002 * 15 13 2 29 29 H 1.08994 * 109.46974 * 60.00654 * 15 13 2 30 30 H 1.08001 * 120.00170 * 0.02562 * 17 16 13 31 31 H 1.07997 * 120.00160 * 180.27273 * 18 17 16 32 32 H 1.08006 * 120.00187 * 179.83436 * 19 18 17 33 33 H 1.08005 * 119.99673 * 180.02562 * 20 19 18 34 34 H 1.07999 * 120.00318 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1437 -0.0088 -2.3771 6 1 1.8868 1.0391 -2.4256 7 6 2.6010 -0.6645 -3.5120 8 7 2.9136 -1.9417 -3.4530 9 14 2.7727 0.2657 -5.1227 10 1 4.1349 0.8499 -5.2142 11 1 2.5567 -0.6666 -6.2582 12 1 1.7630 1.3533 -5.1763 13 6 2.0400 -0.7213 1.2493 14 1 1.6767 -1.7489 1.2492 15 6 3.5700 -0.7218 1.2489 16 6 1.5377 -0.0109 2.4797 17 6 1.8763 1.3109 2.7013 18 6 1.4119 1.9638 3.8279 19 6 0.6164 1.2922 4.7373 20 6 0.2822 -0.0312 4.5183 21 6 0.7429 -0.6827 3.3897 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 2.2490 -1.6318 -1.1527 26 1 3.2335 -2.3998 -4.2459 27 1 3.9333 -1.2353 2.1391 28 1 3.9330 -1.2358 0.3589 29 1 3.9336 0.3057 1.2488 30 1 2.5006 1.8346 1.9925 31 1 1.6729 2.9977 3.9988 32 1 0.2558 1.8015 5.6188 33 1 -0.3397 -0.5557 5.2287 34 1 0.4815 -1.7165 3.2184 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379657952.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:44 Heat of formation + Delta-G solvation = 20.304835 kcal Electronic energy + Delta-G solvation = -14612.608282 eV Core-core repulsion = 12316.998568 eV Total energy + Delta-G solvation = -2295.609714 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.38518 -36.34268 -33.17796 -30.94718 -30.71705 -28.85526 -28.19380 -23.90447 -23.42303 -22.43385 -21.17235 -19.18649 -17.32194 -16.43458 -15.25734 -14.79656 -14.47465 -13.82731 -13.70979 -13.24166 -13.02718 -12.81982 -12.49388 -12.28414 -11.68759 -11.59756 -11.18011 -10.98921 -10.81815 -10.73442 -10.52672 -10.33532 -10.13653 -9.75360 -9.58159 -8.89686 -8.73450 -8.40074 -6.90303 -5.73096 -3.00794 1.58207 1.58790 3.45410 3.50798 3.52241 3.99614 4.61780 5.00358 5.04972 5.14816 5.30285 5.48183 5.58108 5.69625 5.75269 5.84287 5.87625 6.01196 6.19513 6.22428 6.26960 6.43525 6.50516 6.55052 6.65038 6.66715 6.70878 6.86212 6.96673 6.98776 7.20288 7.22154 7.73849 8.45952 9.56948 10.15421 10.50560 11.49801 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.052690 B = 0.006369 C = 0.006253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.281710 B = 4395.007975 C = 4476.964437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.183 3.817 3 H 0.047 0.953 4 N -0.722 5.722 5 C -0.234 4.234 6 H 0.069 0.931 7 C -0.015 4.015 8 N -0.934 5.934 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.062 4.062 14 H 0.073 0.927 15 C -0.134 4.134 16 C -0.051 4.051 17 C -0.115 4.115 18 C -0.121 4.121 19 C -0.137 4.137 20 C -0.122 4.122 21 C -0.121 4.121 22 H 0.044 0.956 23 H 0.037 0.963 24 H 0.050 0.950 25 H 0.383 0.617 26 H 0.254 0.746 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.132 4.317 14.776 15.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.074 3.926 3 H 0.064 0.936 4 N -0.364 5.364 5 C -0.365 4.365 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.583 5.583 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.082 4.082 14 H 0.091 0.909 15 C -0.191 4.191 16 C -0.052 4.052 17 C -0.133 4.133 18 C -0.139 4.139 19 C -0.155 4.155 20 C -0.140 4.140 21 C -0.139 4.139 22 H 0.063 0.937 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.217 0.783 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.140 0.860 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.118 4.438 14.617 15.591 hybrid contribution 0.051 0.161 -0.928 0.943 sum -3.067 4.599 13.689 14.763 Atomic orbital electron populations 1.22434 0.99431 1.00682 0.99808 1.20224 0.91650 0.95161 0.85612 0.93552 1.42414 1.78120 1.10711 1.05129 1.19234 1.36236 0.93815 0.87206 0.91307 1.24709 1.02438 0.95948 0.97940 1.69661 1.51299 1.08589 1.28758 0.86220 0.77737 0.78588 0.83855 1.21801 1.21854 1.20851 1.20515 0.96328 0.99154 0.92165 0.90872 1.21734 0.94051 1.01759 1.01583 1.19978 0.95604 0.94072 0.95504 1.21077 1.00220 0.94558 0.97414 1.21099 0.98335 0.99592 0.94830 1.21032 0.99843 0.95010 0.99578 1.21067 1.00281 0.94981 0.97652 1.21094 0.98424 0.99936 0.94483 0.93691 0.94421 0.93069 0.78304 0.93601 0.94007 0.90778 0.93086 0.85995 0.86536 0.86749 0.86620 0.86349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 9.24 37.16 0.34 -2.79 16 2 C 0.18 3.70 2.30 -67.93 -0.16 3.54 16 3 H 0.05 0.96 7.34 -51.93 -0.38 0.58 16 4 N -0.72 -17.99 4.43 -53.43 -0.24 -18.23 16 5 C -0.23 -6.48 9.93 -15.06 -0.15 -6.63 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 8 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 9 Si 0.90 22.51 29.55 -169.99 -5.02 17.49 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C -0.06 -1.06 2.20 -91.77 -0.20 -1.27 16 14 H 0.07 1.26 7.88 -51.93 -0.41 0.85 16 15 C -0.13 -2.27 8.85 37.16 0.33 -1.94 16 16 C -0.05 -0.77 3.52 -104.63 -0.37 -1.14 16 17 C -0.11 -1.64 8.71 -39.58 -0.34 -1.99 16 18 C -0.12 -1.51 10.05 -39.58 -0.40 -1.90 16 19 C -0.14 -1.60 10.05 -39.58 -0.40 -2.00 16 20 C -0.12 -1.48 10.05 -39.59 -0.40 -1.87 16 21 C -0.12 -1.66 9.67 -39.59 -0.38 -2.04 16 22 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.04 0.65 7.22 -51.93 -0.37 0.27 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 25 H 0.38 10.12 7.58 -40.82 -0.31 9.81 16 26 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.44 7.44 -51.93 -0.39 1.05 16 29 H 0.05 0.84 7.38 -51.93 -0.38 0.46 16 30 H 0.12 1.73 7.11 -52.49 -0.37 1.36 16 31 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.11 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 34 H 0.12 1.49 7.95 -52.49 -0.42 1.07 16 LS Contribution 283.05 15.07 4.27 4.27 Total: -1.00 -29.71 283.05 -7.61 -37.31 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.12 Total: 7.20 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -2.22 Total: -20.56 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.49 Total: -45.71 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.71 -7.61 -37.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379657952.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.619 kcal (2) G-P(sol) polarization free energy of solvation -29.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds