Wall clock time and date at job start Thu Apr 9 2020 11:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99712 * 2 1 4 4 H 1.48498 * 109.47311 * 270.00321 * 3 2 1 5 5 H 1.48494 * 109.47179 * 30.00257 * 3 2 1 6 6 H 1.48502 * 109.46763 * 150.00193 * 3 2 1 7 7 C 1.37877 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99772 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47315 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47315 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00107 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99922 * 180.02562 * 11 10 9 14 14 C 1.39406 * 119.99809 * 175.18524 * 13 11 10 15 15 C 1.39036 * 119.69402 * 185.08931 * 14 13 11 16 16 C 1.38361 * 119.10180 * 179.97438 * 15 14 13 17 17 C 1.38839 * 118.49543 * 0.02562 * 16 15 14 18 18 C 1.38075 * 119.30904 * 359.97438 * 17 16 15 19 19 N 1.31933 * 120.84877 * 359.72339 * 18 17 16 20 20 H 0.96993 * 119.99954 * 359.97438 * 1 2 3 21 21 H 1.09009 * 109.47115 * 60.00109 * 9 7 2 22 22 H 1.08998 * 109.47659 * 300.00454 * 9 7 2 23 23 H 1.09004 * 109.46519 * 60.00495 * 10 9 7 24 24 H 1.08991 * 109.47058 * 300.00527 * 10 9 7 25 25 H 0.97001 * 119.99779 * 354.90119 * 13 11 10 26 26 H 1.08004 * 120.45294 * 359.97438 * 15 14 13 27 27 H 1.07999 * 120.75491 * 179.97438 * 16 15 14 28 28 H 1.07995 * 120.34647 * 180.02562 * 17 16 15 29 29 H 1.08003 * 119.57737 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0003 13 7 2.1659 -6.1344 -0.0016 14 6 1.4726 -7.3395 0.1003 15 6 2.1779 -8.5330 0.2062 16 6 1.4775 -9.7219 0.3073 17 6 0.0899 -9.6760 0.2983 18 6 -0.5453 -8.4549 0.1902 19 7 0.1491 -7.3366 0.1013 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 0.6248 -2.5571 0.8896 23 1 2.8727 -3.6047 0.8878 24 1 2.8714 -3.6039 -0.8921 25 1 3.1330 -6.1360 -0.0770 26 1 3.2580 -8.5321 0.2096 27 1 1.9983 -10.6644 0.3904 28 1 -0.4866 -10.5859 0.3759 29 1 -1.6246 -8.4141 0.1832 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589682788.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:54:09 Heat of formation + Delta-G solvation = 2.105368 kcal Electronic energy + Delta-G solvation = -13882.176728 eV Core-core repulsion = 11384.518820 eV Total energy + Delta-G solvation = -2497.657908 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.53062 -38.63457 -34.63137 -33.46576 -32.35804 -31.14322 -29.75492 -25.89465 -23.84016 -23.19724 -21.40758 -19.66295 -17.90535 -16.96496 -16.13499 -15.94914 -15.25611 -15.07007 -14.52766 -14.29942 -13.83010 -13.28685 -13.03336 -12.33043 -12.19217 -12.02358 -11.18794 -10.94399 -10.60579 -10.55098 -9.97339 -9.83424 -9.79285 -9.57102 -9.11682 -8.67715 -8.32985 -8.15406 -5.96010 -4.00800 1.14949 1.35482 3.15115 3.20820 3.33584 3.39752 3.42299 4.01769 4.45535 4.53639 4.79774 5.03553 5.08591 5.17913 5.38860 5.53552 5.67360 5.93765 6.14953 6.17476 6.19063 6.37846 6.81805 6.91445 7.47110 7.73866 7.84708 8.06380 8.23352 8.37936 8.73955 9.07546 9.62761 11.14914 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.084113 B = 0.005016 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.806116 B = 5580.329494 C = 5889.235260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.128 4.128 11 C 0.495 3.505 12 O -0.463 6.463 13 N -0.672 5.672 14 C 0.369 3.631 15 C -0.219 4.219 16 C -0.050 4.050 17 C -0.219 4.219 18 C 0.134 3.866 19 N -0.477 5.477 20 H 0.261 0.739 21 H 0.025 0.975 22 H 0.025 0.975 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.414 0.586 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.678 -18.489 0.418 19.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.283 3.717 12 O -0.330 6.330 13 N -0.319 5.319 14 C 0.138 3.862 15 C -0.242 4.242 16 C -0.076 4.076 17 C -0.241 4.241 18 C -0.025 4.025 19 N -0.192 5.192 20 H 0.071 0.929 21 H 0.043 0.957 22 H 0.043 0.957 23 H 0.101 0.899 24 H 0.100 0.900 25 H 0.250 0.750 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.149 0.851 29 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.198 -17.395 0.370 17.898 hybrid contribution 1.442 0.024 0.029 1.443 sum 5.640 -17.371 0.399 18.268 Atomic orbital electron populations 1.69999 1.06059 1.26630 1.50040 1.25031 0.94834 0.99259 0.95281 0.86577 0.79746 0.83475 0.78059 1.20668 1.21212 1.19893 1.21197 0.92928 0.90936 1.51570 0.92551 1.18924 0.93155 0.89269 0.98787 1.21921 1.00835 0.91279 1.02727 1.21939 0.89235 0.85068 0.75491 1.90781 1.13723 1.86395 1.42088 1.44189 1.10771 1.04114 1.72801 1.18724 0.89099 0.85987 0.92425 1.21470 1.00897 0.92037 1.09838 1.21291 0.94159 0.97646 0.94486 1.21993 0.95304 0.99565 1.07238 1.22732 1.00301 0.86891 0.92526 1.67785 1.05872 1.30598 1.14920 0.92910 0.95692 0.95686 0.89937 0.89975 0.74975 0.84904 0.84921 0.85109 0.82671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.58 13.29 55.43 0.74 -26.85 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 15 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 6 H -0.27 -6.45 7.11 56.52 0.40 -6.04 15 7 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 15 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 15 9 C 0.04 0.98 4.26 -27.88 -0.12 0.86 15 10 C -0.13 -2.57 5.64 -27.88 -0.16 -2.73 15 11 C 0.50 9.90 7.79 -10.99 -0.09 9.81 15 12 O -0.46 -11.41 14.25 5.56 0.08 -11.34 15 13 N -0.67 -10.17 5.39 -11.43 -0.06 -10.23 15 14 C 0.37 5.71 7.42 -154.70 -1.15 4.56 15 15 C -0.22 -2.46 9.94 -39.24 -0.39 -2.85 15 16 C -0.05 -0.48 10.17 -39.31 -0.40 -0.88 15 17 C -0.22 -2.28 10.11 -39.42 -0.40 -2.68 15 18 C 0.13 1.82 11.17 -17.57 -0.20 1.62 15 19 N -0.48 -8.49 7.89 -12.37 -0.10 -8.59 15 20 H 0.26 7.61 8.31 -40.82 -0.34 7.27 15 21 H 0.02 0.74 8.10 -51.92 -0.42 0.31 15 22 H 0.02 0.74 8.10 -51.93 -0.42 0.32 15 23 H 0.08 1.50 8.14 -51.93 -0.42 1.08 15 24 H 0.08 1.48 8.14 -51.93 -0.42 1.06 15 25 H 0.41 4.40 8.70 -40.82 -0.36 4.05 15 26 H 0.13 1.07 8.06 -52.48 -0.42 0.65 15 27 H 0.13 0.85 8.06 -52.49 -0.42 0.43 15 28 H 0.13 0.96 8.06 -52.49 -0.42 0.54 15 29 H 0.16 1.75 8.06 -52.48 -0.42 1.33 15 LS Contribution 262.20 15.07 3.95 3.95 Total: -1.00 -36.11 262.20 -6.99 -43.11 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -3.27 Total: -0.74 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -3.31 Total: -6.01 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.58 Total: -45.67 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.34 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -36.11 -6.99 -43.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589682788.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.213 kcal (2) G-P(sol) polarization free energy of solvation -36.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds