Wall clock time and date at job start Thu Apr 9 2020 11:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46773 * 2 1 4 4 C 1.52998 * 109.47231 * 120.00350 * 2 1 3 5 5 C 1.50705 * 109.46996 * 185.00323 * 4 2 1 6 6 H 1.08002 * 120.00354 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99865 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00036 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00000 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47099 * 59.99928 * 9 7 5 11 11 H 1.48500 * 109.47151 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46796 * 299.99958 * 9 7 5 13 13 N 1.46902 * 109.47349 * 240.00409 * 2 1 3 14 14 C 1.47446 * 110.99964 * 62.25775 * 13 2 1 15 15 C 1.54317 * 107.36888 * 236.66543 * 14 13 2 16 16 C 1.55401 * 102.90092 * 337.89273 * 15 14 13 17 17 F 1.39896 * 110.87120 * 277.39388 * 16 15 14 18 18 F 1.39896 * 111.05742 * 153.65161 * 16 15 14 19 19 C 1.47846 * 110.99491 * 301.41765 * 13 2 1 20 20 H 1.08999 * 109.46635 * 186.97867 * 1 2 3 21 21 H 1.09000 * 109.46819 * 306.98192 * 1 2 3 22 22 H 1.08995 * 109.47286 * 66.98106 * 1 2 3 23 23 H 1.09001 * 109.46786 * 304.99458 * 4 2 1 24 24 H 1.08997 * 109.47494 * 65.00032 * 4 2 1 25 25 H 0.97005 * 120.00257 * 180.02562 * 8 7 5 26 26 H 1.08998 * 109.88984 * 356.15098 * 14 13 2 27 27 H 1.09000 * 109.88925 * 117.17550 * 14 13 2 28 28 H 1.09004 * 110.71077 * 96.18035 * 15 14 13 29 29 H 1.09000 * 110.70592 * 219.41441 * 15 14 13 30 30 H 1.09004 * 110.37218 * 265.18516 * 19 13 2 31 31 H 1.08992 * 110.37464 * 27.53270 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6149 1.3126 6 1 4.0791 -0.0860 0.5392 7 6 4.2304 -1.1926 2.3582 8 7 3.5765 -1.8370 3.2998 9 14 6.0922 -1.0613 2.4366 10 1 6.4855 0.3694 2.4951 11 1 6.5872 -1.7613 3.6491 12 1 6.6839 -1.6883 1.2274 13 7 2.0197 -0.6924 -1.1995 14 6 1.5918 0.0069 -2.4250 15 6 0.8105 -1.0082 -3.2856 16 6 1.3239 -2.3772 -2.7592 17 9 2.5384 -2.7197 -3.3632 18 9 0.3693 -3.3810 -2.9547 19 6 1.5180 -2.0822 -1.2508 20 1 -0.3632 -1.0201 0.1249 21 1 -0.3633 0.6182 0.8209 22 1 -0.3633 0.4018 -0.9458 23 1 1.6055 -0.2618 2.1369 24 1 1.7517 -1.7716 1.2055 25 1 4.0608 -2.2432 4.0357 26 1 0.9476 0.8473 -2.1666 27 1 2.4643 0.3633 -2.9725 28 1 -0.2623 -0.9096 -3.1192 29 1 1.0508 -0.8838 -4.3415 30 1 2.2502 -2.7661 -0.8216 31 1 0.5677 -2.1622 -0.7232 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591025680.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:54:19 Heat of formation + Delta-G solvation = -99.949021 kcal Electronic energy + Delta-G solvation = -15686.775259 eV Core-core repulsion = 12831.721416 eV Total energy + Delta-G solvation = -2855.053843 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.59853 -46.78761 -38.79292 -33.83410 -32.01064 -28.88977 -28.24246 -27.28697 -23.37473 -21.92828 -21.25197 -19.04488 -17.38058 -16.82518 -16.23201 -15.53035 -14.99210 -14.43059 -14.25514 -13.97783 -13.62663 -13.19629 -13.12454 -12.53021 -12.46561 -11.94836 -11.70847 -11.55504 -11.46690 -11.11222 -10.95365 -10.68308 -10.44064 -10.35491 -10.06272 -9.23644 -9.07751 -8.28890 -7.73103 -5.91598 -3.90393 3.40916 3.44572 3.48725 3.76781 4.10623 4.27066 4.54551 4.55641 4.77203 5.27988 5.34179 5.45688 5.54512 5.63752 5.67306 5.76751 5.88877 5.98970 6.11870 6.23966 6.41119 6.55185 6.83693 7.31267 7.45367 7.70914 7.84862 8.08214 8.52075 9.15543 9.72158 11.20130 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.033245 B = 0.008943 C = 0.008187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.036371 B = 3130.090291 C = 3419.143909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.079 3.921 3 H 0.078 0.922 4 C 0.028 3.972 5 C -0.496 4.496 6 H 0.061 0.939 7 C 0.052 3.948 8 N -0.903 5.903 9 Si 0.891 3.109 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.277 1.277 13 N -0.494 5.494 14 C 0.037 3.963 15 C -0.174 4.174 16 C 0.268 3.732 17 F -0.186 7.186 18 F -0.199 7.199 19 C 0.017 3.983 20 H 0.054 0.946 21 H 0.060 0.940 22 H 0.044 0.956 23 H 0.022 0.978 24 H 0.018 0.982 25 H 0.259 0.741 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.838 2.046 -11.005 13.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.029 4.029 3 H 0.096 0.904 4 C -0.009 4.009 5 C -0.535 4.535 6 H 0.080 0.920 7 C -0.148 4.148 8 N -0.543 5.543 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.203 1.203 13 N -0.217 5.217 14 C -0.091 4.091 15 C -0.213 4.213 16 C 0.231 3.769 17 F -0.167 7.167 18 F -0.180 7.180 19 C -0.112 4.112 20 H 0.073 0.927 21 H 0.079 0.921 22 H 0.063 0.937 23 H 0.040 0.960 24 H 0.037 0.963 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.126 0.874 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.244 1.928 -10.820 12.640 hybrid contribution 0.146 -0.183 -0.012 0.234 sum -6.098 1.745 -10.831 12.552 Atomic orbital electron populations 1.22591 0.99485 1.01712 1.00934 1.22186 0.90189 0.98800 0.91697 0.90394 1.19209 0.96608 0.95274 0.89768 1.21134 0.91653 1.33482 1.07212 0.92046 1.25008 0.98167 0.95712 0.95907 1.69949 1.35435 1.36680 1.12285 0.86670 0.86174 0.78045 0.77166 1.20445 1.21636 1.20256 1.63846 1.56571 0.99873 1.01433 1.22905 0.98484 0.96212 0.91535 1.23764 1.02112 0.93169 1.02274 1.22256 0.74102 0.84993 0.95548 1.93005 1.45285 1.93322 1.85118 1.92967 1.64337 1.64401 1.96272 1.23927 1.02652 0.94013 0.90569 0.92706 0.92075 0.93716 0.96028 0.96350 0.93186 0.91531 0.90049 0.88827 0.88912 0.87414 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.98 8.55 37.16 0.32 -2.66 16 2 C 0.08 1.53 2.16 -67.71 -0.15 1.38 16 3 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 4 C 0.03 0.70 4.34 -27.88 -0.12 0.58 16 5 C -0.50 -13.74 8.84 -34.44 -0.30 -14.04 16 6 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 8 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 9 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 13 N -0.49 -9.11 4.90 -223.29 -1.10 -10.21 16 14 C 0.04 0.52 6.24 -2.83 -0.02 0.50 16 15 C -0.17 -2.20 6.59 -24.77 -0.16 -2.37 16 16 C 0.27 4.24 2.63 -24.45 -0.06 4.17 16 17 F -0.19 -3.26 17.23 2.25 0.04 -3.22 16 18 F -0.20 -3.15 17.24 2.25 0.04 -3.11 16 19 C 0.02 0.30 4.76 -2.30 -0.01 0.29 16 20 H 0.05 0.87 6.24 -51.93 -0.32 0.55 16 21 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.04 0.60 6.30 -51.93 -0.33 0.27 16 23 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.02 0.48 6.99 -51.93 -0.36 0.12 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.07 0.85 6.20 -51.93 -0.32 0.53 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.11 2.18 8.10 -51.93 -0.42 1.76 16 31 H 0.08 1.34 5.49 -51.93 -0.29 1.06 16 LS Contribution 257.31 15.07 3.88 3.88 Total: -1.00 -29.73 257.31 -6.15 -35.88 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -4.12 Total: -3.23 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -0.61 Total: -10.75 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: -0.36 Total: -36.47 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 0.08 Total: -6.33 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.73 -6.15 -35.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591025680.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.071 kcal (2) G-P(sol) polarization free energy of solvation -29.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds