Wall clock time and date at job start Thu Apr 9 2020 11:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47473 * 2 1 4 4 H 1.09009 * 109.46793 * 55.00259 * 3 2 1 5 5 C 1.52999 * 109.47398 * 175.00032 * 3 2 1 6 6 N 1.46502 * 109.47154 * 295.00577 * 3 2 1 7 7 C 1.38820 * 120.00010 * 154.99784 * 6 3 2 8 8 C 1.39803 * 119.58295 * 359.97438 * 7 6 3 9 9 C 1.38598 * 119.48881 * 179.97438 * 8 7 6 10 10 C 1.38393 * 118.67941 * 0.25920 * 9 8 7 11 11 C 1.40547 * 119.14706 * 359.47912 * 10 9 8 12 12 C 1.41324 * 119.78258 * 180.25227 * 11 10 9 13 13 H 1.08001 * 119.99729 * 0.27110 * 12 11 10 14 14 C 1.40017 * 120.00293 * 180.27361 * 12 11 10 15 15 N 1.30750 * 120.00116 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00323 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47382 * 89.99712 * 16 14 12 18 18 H 1.48501 * 109.47313 * 210.00151 * 16 14 12 19 19 H 1.48508 * 109.47126 * 329.99826 * 16 14 12 20 20 N 1.31950 * 119.58604 * 179.97438 * 7 6 3 21 21 H 1.09003 * 109.46790 * 299.99674 * 1 2 3 22 22 H 1.09000 * 109.47256 * 59.99112 * 1 2 3 23 23 H 1.08999 * 109.47427 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46790 * 240.00326 * 2 1 3 25 25 H 1.09000 * 109.47256 * 120.00888 * 2 1 3 26 26 H 1.08999 * 109.47341 * 179.97438 * 5 3 2 27 27 H 1.09003 * 109.47028 * 300.00728 * 5 3 2 28 28 H 1.09003 * 109.46543 * 60.00190 * 5 3 2 29 29 H 0.96996 * 119.99993 * 334.99727 * 6 3 2 30 30 H 1.08000 * 120.25538 * 0.02562 * 8 7 6 31 31 H 1.08002 * 120.65587 * 179.97438 * 9 8 7 32 32 H 1.07994 * 120.42073 * 179.74187 * 10 9 8 33 33 H 0.96995 * 120.00538 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1257 6 7 1.6524 2.0975 -1.2518 7 6 1.5218 3.4787 -1.3009 8 6 1.7618 4.2360 -0.1505 9 6 1.6313 5.6149 -0.2019 10 6 1.2595 6.2027 -1.3983 11 6 1.0376 5.3876 -2.5216 12 6 0.6626 5.9742 -3.7515 13 1 0.5517 7.0459 -3.8270 14 6 0.4348 5.1661 -4.8720 15 7 0.5694 3.8688 -4.7807 16 14 -0.0616 5.9414 -6.4974 17 1 1.1557 6.2618 -7.2852 18 1 -0.9094 4.9908 -7.2608 19 1 -0.8258 7.1881 -6.2383 20 7 1.1727 4.0602 -2.4327 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5140 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8932 -0.5138 -0.8901 25 1 1.8933 -0.5140 0.8899 26 1 3.9283 2.4719 0.1253 27 1 3.8532 0.9568 1.0571 28 1 3.9994 0.9052 -0.7162 29 1 1.4870 1.5662 -2.0462 30 1 2.0474 3.7504 0.7709 31 1 1.8118 6.2182 0.6756 32 1 1.1455 7.2743 -1.4689 33 1 0.4120 3.3089 -5.5570 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306249708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:54:00 Heat of formation + Delta-G solvation = 23.104797 kcal Electronic energy + Delta-G solvation = -14777.598433 eV Core-core repulsion = 12416.684224 eV Total energy + Delta-G solvation = -2360.914210 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.42862 -36.50335 -33.52168 -31.99440 -30.37348 -29.46032 -27.93237 -25.33427 -23.43133 -21.63041 -21.04497 -19.70401 -17.31042 -16.33078 -15.24531 -14.79430 -14.37173 -13.83258 -13.68841 -13.26459 -13.13115 -12.61256 -12.47189 -11.88321 -11.78324 -11.47142 -11.24194 -10.99169 -10.94845 -10.81223 -10.61167 -10.38251 -10.23549 -9.84806 -9.44640 -8.82717 -7.86006 -7.44997 -6.42874 -6.27951 -4.42585 2.91606 3.13353 3.16756 3.29616 3.34653 4.01582 4.28493 4.88651 5.03187 5.31760 5.36676 5.70265 5.83149 5.91369 6.01738 6.10403 6.13696 6.16637 6.24105 6.37508 6.49122 6.58191 6.72598 6.92096 6.95440 7.02913 7.30345 7.66450 7.87811 7.98972 8.22408 8.44449 8.76800 8.86027 9.18976 10.30329 10.45862 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.031716 B = 0.008229 C = 0.007063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.617263 B = 3401.826132 C = 3963.153022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.159 3.841 4 H 0.074 0.926 5 C -0.167 4.167 6 N -0.731 5.731 7 C 0.414 3.586 8 C -0.368 4.368 9 C -0.033 4.033 10 C -0.319 4.319 11 C 0.293 3.707 12 C -0.436 4.436 13 H 0.082 0.918 14 C 0.071 3.929 15 N -0.716 5.716 16 Si 0.904 3.096 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.262 1.262 20 N -0.533 5.533 21 H 0.051 0.949 22 H 0.062 0.938 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.393 0.607 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.322 -5.977 5.147 7.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.052 3.948 4 H 0.092 0.908 5 C -0.226 4.226 6 N -0.367 5.367 7 C 0.174 3.826 8 C -0.394 4.394 9 C -0.057 4.057 10 C -0.342 4.342 11 C 0.165 3.835 12 C -0.468 4.468 13 H 0.100 0.900 14 C -0.153 4.153 15 N -0.338 5.338 16 Si 0.729 3.271 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.186 1.186 20 N -0.254 5.254 21 H 0.070 0.930 22 H 0.081 0.919 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.228 0.772 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.191 -6.670 4.483 8.125 hybrid contribution -0.046 0.652 -0.221 0.690 sum 1.146 -6.018 4.261 7.462 Atomic orbital electron populations 1.21739 0.95531 1.00805 1.02693 1.21785 0.96496 0.96318 1.02000 1.20702 0.93571 0.92139 0.88378 0.90805 1.22303 0.97118 1.02451 1.00693 1.44243 1.77606 1.03582 1.11265 1.18547 0.89517 0.84265 0.90297 1.20646 1.26442 0.94258 0.98036 1.20598 0.95240 0.93843 0.96025 1.21516 1.18829 0.98690 0.95179 1.18202 0.86934 0.86470 0.91847 1.19569 1.39816 0.94491 0.92912 0.89979 1.26042 0.94116 0.94691 1.00496 1.70157 1.29863 1.04376 1.29427 0.86393 0.79221 0.80005 0.81521 1.19546 1.20290 1.18622 1.68227 1.23961 1.11435 1.21793 0.92959 0.91864 0.93349 0.91836 0.91391 0.92018 0.92906 0.92904 0.77191 0.89095 0.89075 0.88830 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.80 37.15 0.36 -1.63 16 2 C -0.13 -1.65 5.47 -26.73 -0.15 -1.79 16 3 C 0.16 2.53 2.26 -67.93 -0.15 2.38 16 4 H 0.07 1.23 6.43 -51.92 -0.33 0.90 16 5 C -0.17 -2.45 9.40 37.16 0.35 -2.10 16 6 N -0.73 -14.80 4.69 -53.90 -0.25 -15.05 16 7 C 0.41 10.24 7.63 -155.33 -1.18 9.06 16 8 C -0.37 -8.64 8.84 -38.86 -0.34 -8.98 16 9 C -0.03 -0.78 10.15 -39.39 -0.40 -1.17 16 10 C -0.32 -8.27 9.83 -38.65 -0.38 -8.65 16 11 C 0.29 8.32 6.55 -85.00 -0.56 7.76 16 12 C -0.44 -12.04 9.14 -37.74 -0.34 -12.38 16 13 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 14 C 0.07 1.86 5.50 -17.35 -0.10 1.77 16 15 N -0.72 -19.34 11.46 55.55 0.64 -18.70 16 16 Si 0.90 19.04 29.56 -169.99 -5.02 14.01 16 17 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 18 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 19 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 20 N -0.53 -14.96 7.89 -10.33 -0.08 -15.04 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.06 0.98 7.75 -51.93 -0.40 0.58 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.04 7.65 -51.93 -0.40 0.64 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.39 8.05 8.72 -40.82 -0.36 7.69 16 30 H 0.09 1.91 6.04 -52.49 -0.32 1.59 16 31 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 32 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 33 H 0.27 6.59 8.29 -40.82 -0.34 6.25 16 LS Contribution 277.18 15.07 4.18 4.18 Total: -1.00 -29.49 277.18 -8.17 -37.66 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -4.74 Total: 8.70 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -2.89 Total: -15.76 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.30 Total: -48.80 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.49 -8.17 -37.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306249708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.768 kcal (2) G-P(sol) polarization free energy of solvation -29.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds