Wall clock time and date at job start Thu Apr 9 2020 11:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47473 * 2 1 4 4 H 1.09009 * 109.46793 * 55.00259 * 3 2 1 5 5 C 1.52999 * 109.47398 * 175.00032 * 3 2 1 6 6 N 1.46502 * 109.47154 * 295.00577 * 3 2 1 7 7 C 1.38820 * 120.00010 * 154.99784 * 6 3 2 8 8 C 1.39803 * 119.58295 * 359.97438 * 7 6 3 9 9 C 1.38598 * 119.48881 * 179.97438 * 8 7 6 10 10 C 1.38393 * 118.67941 * 0.25920 * 9 8 7 11 11 C 1.40547 * 119.14706 * 359.47912 * 10 9 8 12 12 C 1.41324 * 119.78258 * 180.25227 * 11 10 9 13 13 H 1.08001 * 119.99729 * 0.27110 * 12 11 10 14 14 C 1.40017 * 120.00293 * 180.27361 * 12 11 10 15 15 N 1.30750 * 120.00116 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00323 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47382 * 89.99712 * 16 14 12 18 18 H 1.48501 * 109.47313 * 210.00151 * 16 14 12 19 19 H 1.48508 * 109.47126 * 329.99826 * 16 14 12 20 20 N 1.31950 * 119.58604 * 179.97438 * 7 6 3 21 21 H 1.09003 * 109.46790 * 299.99674 * 1 2 3 22 22 H 1.09000 * 109.47256 * 59.99112 * 1 2 3 23 23 H 1.08999 * 109.47427 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46790 * 240.00326 * 2 1 3 25 25 H 1.09000 * 109.47256 * 120.00888 * 2 1 3 26 26 H 1.08999 * 109.47341 * 179.97438 * 5 3 2 27 27 H 1.09003 * 109.47028 * 300.00728 * 5 3 2 28 28 H 1.09003 * 109.46543 * 60.00190 * 5 3 2 29 29 H 0.96996 * 119.99993 * 334.99727 * 6 3 2 30 30 H 1.08000 * 120.25538 * 0.02562 * 8 7 6 31 31 H 1.08002 * 120.65587 * 179.97438 * 9 8 7 32 32 H 1.07994 * 120.42073 * 179.74187 * 10 9 8 33 33 H 0.96995 * 120.00538 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1257 6 7 1.6524 2.0975 -1.2518 7 6 1.5218 3.4787 -1.3009 8 6 1.7618 4.2360 -0.1505 9 6 1.6313 5.6149 -0.2019 10 6 1.2595 6.2027 -1.3983 11 6 1.0376 5.3876 -2.5216 12 6 0.6626 5.9742 -3.7515 13 1 0.5517 7.0459 -3.8270 14 6 0.4348 5.1661 -4.8720 15 7 0.5694 3.8688 -4.7807 16 14 -0.0616 5.9414 -6.4974 17 1 1.1557 6.2618 -7.2852 18 1 -0.9094 4.9908 -7.2608 19 1 -0.8258 7.1881 -6.2383 20 7 1.1727 4.0602 -2.4327 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5140 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8932 -0.5138 -0.8901 25 1 1.8933 -0.5140 0.8899 26 1 3.9283 2.4719 0.1253 27 1 3.8532 0.9568 1.0571 28 1 3.9994 0.9052 -0.7162 29 1 1.4870 1.5662 -2.0462 30 1 2.0474 3.7504 0.7709 31 1 1.8118 6.2182 0.6756 32 1 1.1455 7.2743 -1.4689 33 1 0.4120 3.3089 -5.5570 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306249708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:54:00 Heat of formation + Delta-G solvation = 6.136208 kcal Electronic energy + Delta-G solvation = -14778.334247 eV Core-core repulsion = 12416.684224 eV Total energy + Delta-G solvation = -2361.650023 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.23174 -38.01633 -35.40473 -33.57683 -32.21790 -30.90172 -29.63267 -27.28051 -24.62496 -23.46559 -22.73358 -21.23064 -19.20893 -18.09623 -16.79876 -16.55330 -16.14528 -15.43367 -15.07992 -14.84902 -14.43063 -14.19567 -14.14868 -13.60699 -13.20281 -12.86896 -12.72044 -12.64762 -12.57969 -12.29294 -12.10796 -11.86438 -11.66690 -11.50031 -11.26114 -10.62573 -9.82181 -9.42230 -8.23921 -8.21497 -6.46762 1.07818 1.36880 1.41065 1.54377 1.59241 2.25331 2.72416 2.93829 3.87502 4.04765 4.21543 4.24795 4.41242 4.51701 4.69470 4.77680 4.81095 4.94931 4.97655 5.01809 5.05763 5.09867 5.15429 5.26879 5.37970 5.43472 5.46975 5.74554 5.98798 6.11528 6.24386 6.61237 6.86326 6.99484 7.26648 8.37213 8.52930 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.031716 B = 0.008229 C = 0.007063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.617263 B = 3401.826132 C = 3963.153022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.152 3.848 4 H 0.069 0.931 5 C -0.160 4.160 6 N -0.725 5.725 7 C 0.398 3.602 8 C -0.367 4.367 9 C -0.031 4.031 10 C -0.348 4.348 11 C 0.258 3.742 12 C -0.473 4.473 13 H 0.085 0.915 14 C 0.025 3.975 15 N -0.752 5.752 16 Si 0.986 3.014 17 H -0.264 1.264 18 H -0.268 1.268 19 H -0.257 1.257 20 N -0.567 5.567 21 H 0.051 0.949 22 H 0.031 0.969 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.101 0.899 26 H 0.036 0.964 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.389 0.611 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.100 0.900 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.604 -6.918 5.880 9.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C 0.047 3.953 4 H 0.087 0.913 5 C -0.219 4.219 6 N -0.360 5.360 7 C 0.157 3.843 8 C -0.393 4.393 9 C -0.055 4.055 10 C -0.371 4.371 11 C 0.131 3.869 12 C -0.505 4.505 13 H 0.103 0.897 14 C -0.196 4.196 15 N -0.374 5.374 16 Si 0.806 3.194 17 H -0.188 1.188 18 H -0.193 1.193 19 H -0.180 1.180 20 N -0.290 5.290 21 H 0.070 0.930 22 H 0.050 0.950 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.119 0.881 26 H 0.055 0.945 27 H 0.106 0.894 28 H 0.071 0.929 29 H 0.223 0.777 30 H 0.136 0.864 31 H 0.145 0.855 32 H 0.119 0.881 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.489 -7.643 5.261 9.398 hybrid contribution -0.094 0.852 -0.303 0.909 sum 1.395 -6.792 4.958 8.524 Atomic orbital electron populations 1.21720 0.96012 1.01801 1.01090 1.21758 0.95942 0.94213 1.03771 1.21031 0.94584 0.93629 0.86062 0.91293 1.22231 0.95753 1.01308 1.02576 1.44472 1.76694 1.02025 1.12770 1.18997 0.89038 0.86138 0.90119 1.20981 1.25255 0.94396 0.98625 1.21012 0.93654 0.94419 0.96463 1.21671 1.20601 0.99065 0.95745 1.18691 0.87741 0.87334 0.93135 1.19926 1.41524 0.95045 0.94017 0.89681 1.26962 0.93522 0.95076 1.04072 1.70255 1.30469 1.05824 1.30884 0.85165 0.78992 0.79077 0.76139 1.18830 1.19262 1.18048 1.68204 1.25468 1.11682 1.23634 0.93018 0.94969 0.91095 0.91425 0.88102 0.94479 0.89410 0.92898 0.77661 0.86376 0.85451 0.88135 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.80 71.98 0.71 -2.98 16 2 C -0.12 -2.73 5.47 30.59 0.17 -2.56 16 3 C 0.15 4.55 2.26 44.99 0.10 4.66 16 4 H 0.07 2.15 6.43 -2.38 -0.02 2.13 16 5 C -0.16 -4.33 9.40 71.98 0.68 -3.65 16 6 N -0.73 -29.32 4.69 -324.44 -1.52 -30.84 16 7 C 0.40 19.93 7.63 133.42 1.02 20.95 16 8 C -0.37 -16.96 8.84 22.73 0.20 -16.76 16 9 C -0.03 -1.46 10.15 22.39 0.23 -1.24 16 10 C -0.35 -18.38 9.83 22.87 0.22 -18.15 16 11 C 0.26 15.19 6.55 40.18 0.26 15.45 16 12 C -0.47 -27.02 9.14 23.46 0.21 -26.80 16 13 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 14 C 0.03 1.34 5.50 85.29 0.47 1.81 16 15 N -0.75 -41.67 11.46 21.84 0.25 -41.42 16 16 Si 0.99 39.54 29.56 68.60 2.03 41.57 16 17 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 18 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 19 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 20 N -0.57 -32.85 7.89 -186.59 -1.47 -34.32 16 21 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.03 0.98 7.75 -2.39 -0.02 0.96 16 23 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.10 1.72 8.14 -2.39 -0.02 1.71 16 26 H 0.04 1.18 7.65 -2.39 -0.02 1.16 16 27 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.39 16.18 8.72 -92.71 -0.81 15.37 16 30 H 0.12 4.72 6.04 -2.91 -0.02 4.70 16 31 H 0.13 4.90 8.06 -2.91 -0.02 4.88 16 32 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 33 H 0.28 13.78 8.29 -92.71 -0.77 13.01 16 Total: -1.00 -65.67 277.18 3.84 -61.83 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: 0.29 Total: 32.48 kcal Atomic # 6 Polarization: -33.55 SS G_CDS: 4.27 Total: -29.28 kcal Atomic # 7 Polarization: -103.85 SS G_CDS: -2.74 Total: -106.59 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -65.67 3.84 -61.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306249708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.964 kcal (2) G-P(sol) polarization free energy of solvation -65.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds