Wall clock time and date at job start Thu Apr 9 2020 11:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99839 * 2 1 4 4 C 1.50700 * 109.46946 * 180.02562 * 3 2 1 5 5 C 1.38292 * 119.92221 * 90.00016 * 4 3 2 6 6 C 1.38103 * 120.06781 * 180.02562 * 5 4 3 7 7 C 1.38907 * 119.93251 * 359.97438 * 6 5 4 8 8 N 1.39668 * 120.07688 * 179.97438 * 7 6 5 9 9 C 1.46506 * 120.00181 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47289 * 180.02562 * 9 8 7 11 11 H 1.07994 * 119.99399 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99789 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00144 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99733 * 179.97438 * 12 10 9 15 15 H 1.48490 * 109.47181 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46716 * 120.00463 * 14 12 10 17 17 H 1.48500 * 109.46999 * 240.00161 * 14 12 10 18 18 C 1.38907 * 119.84667 * 0.25939 * 7 6 5 19 19 C 1.38108 * 119.92754 * 359.48722 * 18 7 6 20 20 H 1.09000 * 109.47290 * 59.99853 * 1 2 3 21 21 H 1.09007 * 109.47164 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47308 * 299.99399 * 1 2 3 23 23 H 1.08997 * 109.47037 * 60.00207 * 3 2 1 24 24 H 1.08997 * 109.46957 * 300.00149 * 3 2 1 25 25 H 1.07994 * 119.96476 * 0.04575 * 5 4 3 26 26 H 1.08003 * 120.03201 * 179.97438 * 6 5 4 27 27 H 0.97001 * 120.00568 * 0.02562 * 8 7 6 28 28 H 1.09001 * 109.47060 * 300.00571 * 9 8 7 29 29 H 1.09004 * 109.47073 * 60.00060 * 9 8 7 30 30 H 0.96997 * 119.99752 * 179.97438 * 13 12 10 31 31 H 1.08004 * 120.03686 * 179.72396 * 18 7 6 32 32 H 1.07998 * 119.96672 * 180.25929 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1997 1.1322 -1.1995 6 6 5.5764 1.0227 -1.2036 7 6 6.2709 0.9675 -0.0019 8 7 7.6631 0.8561 -0.0025 9 6 8.3939 0.7975 1.2659 10 6 9.8707 0.6800 0.9899 11 1 10.2291 0.6523 -0.0285 12 6 10.7643 0.6090 2.0375 13 7 10.3278 0.6433 3.2776 14 14 12.5949 0.4627 1.6953 15 1 12.8243 0.4445 0.2283 16 1 13.3042 1.6226 2.2925 17 1 13.1112 -0.7947 2.2932 18 6 5.5770 1.0173 1.2005 19 6 4.2007 1.1322 1.1975 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 1.6886 1.8464 0.8900 24 1 1.6885 1.8464 -0.8899 25 1 3.6593 1.1759 -2.1335 26 1 6.1124 0.9799 -2.1402 27 1 8.1463 0.8176 -0.8427 28 1 8.2025 1.7055 1.8378 29 1 8.0607 -0.0688 1.8375 30 1 10.9564 0.5930 4.0146 31 1 6.1136 0.9701 2.1366 32 1 3.6610 1.1752 2.1320 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300826522.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:39 Heat of formation + Delta-G solvation = -29.303297 kcal Electronic energy + Delta-G solvation = -14052.469450 eV Core-core repulsion = 11591.563993 eV Total energy + Delta-G solvation = -2460.905457 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.06092 -37.51660 -35.02797 -32.71922 -30.48120 -30.16306 -27.44461 -26.22424 -24.33075 -23.05551 -21.58823 -20.22254 -17.31817 -16.31826 -16.08765 -15.76611 -15.47312 -14.98124 -14.27319 -13.94816 -13.24703 -13.17696 -12.92772 -12.78386 -12.14679 -11.96283 -11.90442 -11.44451 -11.01157 -10.93836 -10.74411 -10.46885 -10.12341 -9.63082 -9.39157 -9.38772 -8.55693 -8.38919 -6.55968 -6.22255 -4.27539 1.99760 2.05955 3.21280 3.28766 3.32335 3.94216 4.24501 4.56721 4.58875 5.12277 5.15068 5.15668 5.29699 5.36993 5.49620 5.56085 5.57223 5.60161 5.95279 6.22526 6.35583 6.54545 6.88627 6.97268 7.11922 7.16535 7.23708 7.41217 7.45883 7.65729 7.93388 8.27461 8.65413 8.88850 9.38980 10.88419 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.074239 B = 0.004641 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.068472 B = 6032.065173 C = 6279.903222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.387 6.387 3 C 0.117 3.883 4 C -0.184 4.184 5 C -0.049 4.049 6 C -0.221 4.221 7 C 0.240 3.760 8 N -0.727 5.727 9 C 0.249 3.751 10 C -0.539 4.539 11 H 0.063 0.937 12 C 0.063 3.937 13 N -0.889 5.889 14 Si 0.904 3.096 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.206 4.206 19 C -0.047 4.047 20 H 0.037 0.963 21 H 0.082 0.918 22 H 0.038 0.962 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.391 0.609 28 H 0.021 0.979 29 H 0.022 0.978 30 H 0.265 0.735 31 H 0.126 0.874 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.407 1.418 -6.006 15.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.306 6.306 3 C 0.042 3.958 4 C -0.187 4.187 5 C -0.068 4.068 6 C -0.244 4.244 7 C 0.130 3.870 8 N -0.349 5.349 9 C 0.128 3.872 10 C -0.577 4.577 11 H 0.081 0.919 12 C -0.140 4.140 13 N -0.526 5.526 14 Si 0.731 3.269 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.207 1.207 18 C -0.229 4.229 19 C -0.066 4.066 20 H 0.056 0.944 21 H 0.100 0.900 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.129 0.871 26 H 0.132 0.868 27 H 0.225 0.775 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.143 0.857 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.067 1.237 -5.592 15.188 hybrid contribution 1.009 0.117 -0.337 1.070 sum -13.058 1.354 -5.930 14.405 Atomic orbital electron populations 1.22703 0.82011 1.02380 0.99576 1.88037 1.18719 1.28592 1.95270 1.21185 0.90798 0.84169 0.99684 1.19044 0.92868 1.13147 0.93659 1.20551 0.93337 0.96242 0.96628 1.20489 0.94248 1.13467 0.96206 1.18122 0.85007 0.90315 0.93554 1.45568 1.02017 1.76665 1.10642 1.19143 0.90770 0.96664 0.80660 1.21236 0.90843 1.52302 0.93362 0.91920 1.24937 0.99599 0.94673 0.94803 1.69957 1.35081 1.49253 0.98348 0.86349 0.84222 0.77813 0.78496 1.19640 1.20764 1.20746 1.20727 0.94009 1.10887 0.97276 1.20666 0.93491 0.95671 0.96729 0.94448 0.89987 0.94368 0.93278 0.93392 0.87095 0.86797 0.77518 0.96070 0.96055 0.92495 0.85650 0.86904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -5.46 10.69 -35.23 -0.38 -5.83 16 3 C 0.12 1.54 6.06 36.01 0.22 1.76 16 4 C -0.18 -2.94 5.51 -104.59 -0.58 -3.51 16 5 C -0.05 -0.77 9.69 -39.61 -0.38 -1.15 16 6 C -0.22 -3.80 9.90 -39.38 -0.39 -4.19 16 7 C 0.24 4.77 6.65 -83.79 -0.56 4.22 16 8 N -0.73 -15.69 5.73 -59.80 -0.34 -16.03 16 9 C 0.25 6.37 4.67 -5.19 -0.02 6.34 16 10 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 16 11 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -25.60 13.29 55.43 0.74 -24.87 16 14 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C -0.21 -4.02 9.31 -39.38 -0.37 -4.39 16 19 C -0.05 -0.79 9.69 -39.61 -0.38 -1.18 16 20 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 21 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 22 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 24 H 0.05 0.54 8.08 -51.93 -0.42 0.12 16 25 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 26 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 27 H 0.39 7.82 8.33 -40.82 -0.34 7.48 16 28 H 0.02 0.58 7.96 -51.93 -0.41 0.17 16 29 H 0.02 0.59 7.94 -51.93 -0.41 0.18 16 30 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.13 2.58 6.73 -52.48 -0.35 2.23 16 32 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 279.42 15.07 4.21 4.21 Total: -1.00 -29.47 279.42 -6.99 -36.46 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -4.43 Total: 4.22 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -1.77 Total: -14.04 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.39 Total: -40.90 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.38 Total: -5.83 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.47 -6.99 -36.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300826522.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.156 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds