Wall clock time and date at job start Thu Apr 9 2020 11:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99839 * 2 1 4 4 C 1.50700 * 109.46946 * 180.02562 * 3 2 1 5 5 C 1.38292 * 119.92221 * 90.00016 * 4 3 2 6 6 C 1.38103 * 120.06781 * 180.02562 * 5 4 3 7 7 C 1.38907 * 119.93251 * 359.97438 * 6 5 4 8 8 N 1.39668 * 120.07688 * 179.97438 * 7 6 5 9 9 C 1.46506 * 120.00181 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47289 * 180.02562 * 9 8 7 11 11 H 1.07994 * 119.99399 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99789 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00144 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99733 * 179.97438 * 12 10 9 15 15 H 1.48490 * 109.47181 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46716 * 120.00463 * 14 12 10 17 17 H 1.48500 * 109.46999 * 240.00161 * 14 12 10 18 18 C 1.38907 * 119.84667 * 0.25939 * 7 6 5 19 19 C 1.38108 * 119.92754 * 359.48722 * 18 7 6 20 20 H 1.09000 * 109.47290 * 59.99853 * 1 2 3 21 21 H 1.09007 * 109.47164 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47308 * 299.99399 * 1 2 3 23 23 H 1.08997 * 109.47037 * 60.00207 * 3 2 1 24 24 H 1.08997 * 109.46957 * 300.00149 * 3 2 1 25 25 H 1.07994 * 119.96476 * 0.04575 * 5 4 3 26 26 H 1.08003 * 120.03201 * 179.97438 * 6 5 4 27 27 H 0.97001 * 120.00568 * 0.02562 * 8 7 6 28 28 H 1.09001 * 109.47060 * 300.00571 * 9 8 7 29 29 H 1.09004 * 109.47073 * 60.00060 * 9 8 7 30 30 H 0.96997 * 119.99752 * 179.97438 * 13 12 10 31 31 H 1.08004 * 120.03686 * 179.72396 * 18 7 6 32 32 H 1.07998 * 119.96672 * 180.25929 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1997 1.1322 -1.1995 6 6 5.5764 1.0227 -1.2036 7 6 6.2709 0.9675 -0.0019 8 7 7.6631 0.8561 -0.0025 9 6 8.3939 0.7975 1.2659 10 6 9.8707 0.6800 0.9899 11 1 10.2291 0.6523 -0.0285 12 6 10.7643 0.6090 2.0375 13 7 10.3278 0.6433 3.2776 14 14 12.5949 0.4627 1.6953 15 1 12.8243 0.4445 0.2283 16 1 13.3042 1.6226 2.2925 17 1 13.1112 -0.7947 2.2932 18 6 5.5770 1.0173 1.2005 19 6 4.2007 1.1322 1.1975 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 1.6886 1.8464 0.8900 24 1 1.6885 1.8464 -0.8899 25 1 3.6593 1.1759 -2.1335 26 1 6.1124 0.9799 -2.1402 27 1 8.1463 0.8176 -0.8427 28 1 8.2025 1.7055 1.8378 29 1 8.0607 -0.0688 1.8375 30 1 10.9564 0.5930 4.0146 31 1 6.1136 0.9701 2.1366 32 1 3.6610 1.1752 2.1320 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300826522.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:39 Heat of formation + Delta-G solvation = -48.219346 kcal Electronic energy + Delta-G solvation = -14053.289711 eV Core-core repulsion = 11591.563993 eV Total energy + Delta-G solvation = -2461.725719 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.41999 -38.59270 -36.66825 -34.67344 -31.90987 -31.58421 -29.05396 -27.34910 -25.67192 -24.75566 -23.10589 -21.67093 -19.15279 -17.69320 -17.20299 -17.15772 -16.77498 -16.53025 -15.78402 -15.20623 -15.06640 -14.65789 -14.28279 -14.15971 -13.94876 -13.46706 -13.01440 -12.79510 -12.79206 -12.38572 -12.23789 -11.94445 -11.71085 -11.42305 -11.05023 -10.54758 -10.53494 -9.77339 -8.32411 -8.15637 -6.46621 0.60971 0.68436 1.40311 1.40675 1.54198 2.33050 2.80343 2.89431 3.02880 3.39603 3.99805 4.10187 4.23717 4.38099 4.51574 4.58831 4.62935 4.66684 4.83906 4.87972 4.91756 5.07134 5.21828 5.26938 5.48616 5.54392 5.57357 5.81567 5.85509 6.12621 6.35236 6.46601 6.72963 7.13888 7.27646 8.79763 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.074239 B = 0.004641 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.068472 B = 6032.065173 C = 6279.903222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.417 6.417 3 C 0.117 3.883 4 C -0.177 4.177 5 C -0.047 4.047 6 C -0.214 4.214 7 C 0.209 3.791 8 N -0.734 5.734 9 C 0.271 3.729 10 C -0.558 4.558 11 H 0.071 0.929 12 C 0.008 3.992 13 N -0.927 5.927 14 Si 0.980 3.020 15 H -0.260 1.260 16 H -0.276 1.276 17 H -0.277 1.277 18 C -0.230 4.230 19 C -0.052 4.052 20 H 0.054 0.946 21 H 0.091 0.909 22 H 0.049 0.951 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.147 0.853 26 H 0.135 0.865 27 H 0.398 0.602 28 H -0.009 1.009 29 H -0.011 1.011 30 H 0.269 0.731 31 H 0.098 0.902 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.555 1.608 -7.824 17.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.337 6.337 3 C 0.042 3.958 4 C -0.179 4.179 5 C -0.066 4.066 6 C -0.237 4.237 7 C 0.103 3.897 8 N -0.360 5.360 9 C 0.148 3.852 10 C -0.596 4.596 11 H 0.090 0.910 12 C -0.192 4.192 13 N -0.566 5.566 14 Si 0.804 3.196 15 H -0.184 1.184 16 H -0.202 1.202 17 H -0.202 1.202 18 C -0.253 4.253 19 C -0.071 4.071 20 H 0.073 0.927 21 H 0.110 0.890 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.164 0.836 26 H 0.153 0.847 27 H 0.233 0.767 28 H 0.009 0.991 29 H 0.007 0.993 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.274 1.432 -7.437 17.049 hybrid contribution 1.130 0.062 0.216 1.153 sum -14.143 1.494 -7.221 15.950 Atomic orbital electron populations 1.22919 0.79707 1.03567 1.00981 1.87969 1.21248 1.28936 1.95585 1.21232 0.88523 0.84411 1.01651 1.19512 0.94987 1.10364 0.93079 1.20985 0.92769 0.94707 0.98130 1.20762 0.95088 1.12070 0.95814 1.18401 0.84277 0.92219 0.94842 1.45180 1.02779 1.78832 1.09171 1.18574 0.90901 0.93761 0.81977 1.21618 0.91650 1.52340 0.93969 0.91041 1.25953 1.04846 0.93963 0.94439 1.70090 1.36989 1.50024 0.99453 0.85178 0.77700 0.77891 0.78876 1.18417 1.20159 1.20211 1.20729 0.95375 1.12742 0.96431 1.20894 0.92411 0.95308 0.98462 0.92747 0.89049 0.93202 0.91879 0.90935 0.83553 0.84731 0.76737 0.99097 0.99281 0.92177 0.88373 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -10.53 10.69 -148.98 -1.59 -12.12 16 3 C 0.12 2.68 6.06 71.24 0.43 3.11 16 4 C -0.18 -5.23 5.51 -19.84 -0.11 -5.34 16 5 C -0.05 -1.36 9.69 22.25 0.22 -1.14 16 6 C -0.21 -7.08 9.90 22.40 0.22 -6.86 16 7 C 0.21 8.51 6.65 38.21 0.25 8.77 16 8 N -0.73 -32.92 5.73 -343.12 -1.96 -34.88 16 9 C 0.27 14.70 4.67 85.63 0.40 15.10 16 10 C -0.56 -31.15 9.28 25.60 0.24 -30.91 16 11 H 0.07 3.77 7.60 -2.91 -0.02 3.74 16 12 C 0.01 0.43 5.46 84.65 0.46 0.90 16 13 N -0.93 -55.08 13.29 21.45 0.28 -54.80 16 14 Si 0.98 43.07 29.54 68.60 2.03 45.09 16 15 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 16 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 18 C -0.23 -9.38 9.31 22.40 0.21 -9.17 16 19 C -0.05 -1.75 9.69 22.25 0.22 -1.54 16 20 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 21 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 22 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 23 H 0.06 1.26 8.08 -2.39 -0.02 1.24 16 24 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 25 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 26 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 27 H 0.40 16.24 8.33 -92.71 -0.77 15.47 16 28 H -0.01 -0.52 7.96 -2.39 -0.02 -0.54 16 29 H -0.01 -0.63 7.94 -2.38 -0.02 -0.65 16 30 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 31 H 0.10 4.45 6.73 -2.91 -0.02 4.43 16 32 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -65.01 279.42 2.87 -62.14 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.33 Total: 20.02 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: 3.79 Total: -25.45 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -1.68 Total: -89.68 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -1.59 Total: -12.12 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -65.01 2.87 -62.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300826522.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.921 kcal (2) G-P(sol) polarization free energy of solvation -65.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds