Wall clock time and date at job start Thu Apr 9 2020 11:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47585 * 341.18324 * 3 2 1 5 5 C 1.37104 * 119.99762 * 264.17043 * 4 3 2 6 6 H 1.08003 * 119.99367 * 197.37673 * 5 4 3 7 7 C 1.38941 * 120.00424 * 17.37579 * 5 4 3 8 8 N 1.31415 * 119.99793 * 21.58092 * 7 5 4 9 9 Si 1.86798 * 120.00265 * 201.58054 * 7 5 4 10 10 H 1.48506 * 109.47054 * 90.00033 * 9 7 5 11 11 H 1.48502 * 109.47284 * 210.00083 * 9 7 5 12 12 H 1.48494 * 109.47167 * 330.00164 * 9 7 5 13 13 C 1.34774 * 120.00192 * 84.16929 * 4 3 2 14 14 O 1.21295 * 120.00260 * 180.02562 * 13 4 3 15 15 C 1.50699 * 119.99845 * 359.97438 * 13 4 3 16 16 H 1.09000 * 115.55290 * 325.58912 * 15 13 4 17 17 C 1.53004 * 117.49326 * 111.25922 * 15 13 4 18 18 C 1.52996 * 60.00050 * 107.51422 * 17 15 13 19 19 C 1.53002 * 117.49886 * 252.51129 * 18 17 15 20 20 C 1.52999 * 117.50085 * 107.48835 * 18 17 15 21 21 H 4.40643 * 5.51460 * 179.97438 * 4 1 2 22 22 H 1.08999 * 109.47250 * 221.18390 * 3 2 1 23 23 H 1.09002 * 109.47627 * 101.18442 * 3 2 1 24 24 H 0.97002 * 120.00338 * 179.97438 * 8 7 5 25 25 H 1.09003 * 117.49472 * 215.00391 * 17 15 13 26 26 H 1.08999 * 117.50245 * 0.02562 * 17 15 13 27 27 H 1.08999 * 109.47213 * 128.61993 * 19 18 17 28 28 H 1.09002 * 109.47053 * 248.62444 * 19 18 17 29 29 H 1.09003 * 109.46782 * 8.61576 * 19 18 17 30 30 H 1.09000 * 109.47181 * 351.37398 * 20 18 17 31 31 H 1.08999 * 109.47242 * 111.37590 * 20 18 17 32 32 H 1.09006 * 109.47478 * 231.37754 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.3065 0.4455 5 6 3.4773 -1.4990 1.7591 6 1 4.0895 -2.3434 2.0393 7 6 3.0367 -0.6077 2.7297 8 7 1.9849 0.1461 2.5006 9 14 3.9393 -0.4811 4.3602 10 1 5.0072 0.5457 4.2564 11 1 2.9820 -0.0935 5.4272 12 1 4.5465 -1.7947 4.6932 13 6 3.2483 -2.3197 -0.4359 14 8 3.6527 -3.4021 -0.0670 15 6 2.8714 -2.1083 -1.8796 16 1 2.0369 -1.4289 -2.0530 17 6 3.9996 -2.1197 -2.9131 18 6 3.0249 -3.2962 -2.8316 19 6 3.5491 -4.6085 -2.2449 20 6 1.9952 -3.4396 -3.9540 21 1 -1.0499 -0.0003 0.0003 22 1 3.0089 0.7742 0.6767 23 1 3.0093 0.2002 -1.0081 24 1 1.6771 0.7681 3.1783 25 1 3.9072 -1.4478 -3.7664 26 1 5.0143 -2.2806 -2.5488 27 1 2.8729 -4.9521 -1.4620 28 1 3.6065 -5.3608 -3.0315 29 1 4.5412 -4.4473 -1.8232 30 1 2.0255 -2.5550 -4.5901 31 1 2.2269 -4.3230 -4.5490 32 1 0.9995 -3.5429 -3.5227 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300904787.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:44 Heat of formation + Delta-G solvation = 35.760098 kcal Electronic energy + Delta-G solvation = -15222.665858 eV Core-core repulsion = 12764.581761 eV Total energy + Delta-G solvation = -2458.084097 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.99348 -38.41059 -36.76645 -33.99810 -33.01796 -30.35262 -28.38867 -28.19118 -26.88813 -24.31366 -21.09108 -19.80511 -19.33521 -18.46077 -17.94514 -16.63167 -16.00753 -15.83316 -15.25025 -14.90292 -14.52978 -14.12206 -14.03011 -13.82955 -13.50468 -13.35874 -12.80721 -12.74835 -12.59491 -12.48674 -12.17689 -12.02852 -11.23506 -11.09005 -10.96262 -10.68857 -10.54421 -10.03964 -9.80505 -8.31583 -5.91544 1.35182 1.40940 1.52191 1.83063 2.12181 2.32195 2.38210 2.82569 3.07409 3.22878 3.80936 3.86596 3.95364 4.03269 4.27601 4.41839 4.67719 4.75823 4.85937 4.87527 4.96766 5.04988 5.12338 5.15029 5.17253 5.36250 5.42157 5.47012 5.65094 6.08128 6.47474 7.13516 7.17240 7.45725 8.05217 8.67113 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033995 B = 0.009516 C = 0.008048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.453292 B = 2941.828218 C = 3478.488383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.153 4.153 3 C 0.238 3.762 4 N -0.454 5.454 5 C -0.351 4.351 6 H 0.073 0.927 7 C 0.001 3.999 8 N -0.873 5.873 9 Si 0.984 3.016 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.279 1.279 13 C 0.468 3.532 14 O -0.618 6.618 15 C -0.189 4.189 16 H 0.119 0.881 17 C -0.133 4.133 18 C -0.102 4.102 19 C -0.091 4.091 20 C -0.107 4.107 21 H 0.233 0.767 22 H 0.090 0.910 23 H 0.094 0.906 24 H 0.271 0.729 25 H 0.133 0.867 26 H 0.083 0.917 27 H 0.033 0.967 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.371 1.152 -10.568 10.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.155 4.155 3 C 0.115 3.885 4 N -0.171 5.171 5 C -0.479 4.479 6 H 0.091 0.909 7 C -0.202 4.202 8 N -0.510 5.510 9 Si 0.808 3.192 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.204 1.204 13 C 0.259 3.741 14 O -0.505 6.505 15 C -0.210 4.210 16 H 0.137 0.863 17 C -0.170 4.170 18 C -0.103 4.103 19 C -0.148 4.148 20 C -0.163 4.163 21 H 0.250 0.750 22 H 0.108 0.892 23 H 0.112 0.888 24 H 0.081 0.919 25 H 0.151 0.849 26 H 0.101 0.899 27 H 0.052 0.948 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.260 0.796 -10.252 10.286 hybrid contribution 0.006 0.149 1.525 1.532 sum -0.254 0.945 -8.727 8.782 Atomic orbital electron populations 1.25138 0.96350 1.00441 1.04673 1.23507 0.95057 1.00003 0.96895 1.18254 0.84525 0.86601 0.99119 1.43870 1.56247 1.09163 1.07858 1.19553 1.31586 1.13278 0.83474 0.90888 1.25968 0.95481 0.96583 1.02200 1.70190 1.19853 1.24513 1.36448 0.85083 0.78293 0.78514 0.77303 1.18909 1.20278 1.20394 1.20132 0.82553 0.83441 0.88014 1.90472 1.52750 1.26179 1.81068 1.22252 1.03956 1.05884 0.88955 0.86344 1.23265 0.93706 1.00950 0.99096 1.21710 1.00694 0.90150 0.97711 1.21167 1.00045 0.94830 0.98751 1.21367 0.96227 1.03531 0.95219 0.75026 0.89167 0.88804 0.91881 0.84852 0.89858 0.94774 0.91062 0.94246 0.90439 0.90197 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.04 19.25 74.32 1.43 -8.61 16 2 C -0.15 -6.90 10.73 31.12 0.33 -6.57 16 3 C 0.24 10.80 4.80 84.57 0.41 11.21 16 4 N -0.45 -23.97 2.60 -645.43 -1.68 -25.65 16 5 C -0.35 -20.32 9.33 84.04 0.78 -19.54 16 6 H 0.07 4.55 7.38 -2.91 -0.02 4.53 16 7 C 0.00 0.05 4.86 84.92 0.41 0.46 16 8 N -0.87 -46.44 9.48 21.66 0.21 -46.23 16 9 Si 0.98 42.92 29.60 68.60 2.03 44.95 16 10 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 11 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 13 C 0.47 23.73 7.33 87.66 0.64 24.37 16 14 O -0.62 -35.35 12.76 -3.08 -0.04 -35.39 16 15 C -0.19 -7.21 4.52 -11.54 -0.05 -7.26 16 16 H 0.12 4.28 6.73 -2.39 -0.02 4.27 16 17 C -0.13 -3.96 9.52 30.59 0.29 -3.67 16 18 C -0.10 -3.26 2.70 -52.18 -0.14 -3.40 16 19 C -0.09 -3.25 8.09 71.98 0.58 -2.67 16 20 C -0.11 -2.48 9.85 71.98 0.71 -1.77 16 21 H 0.23 7.30 7.80 -4.42 -0.03 7.26 16 22 H 0.09 4.35 6.44 -2.39 -0.02 4.33 16 23 H 0.09 3.54 6.98 -2.39 -0.02 3.53 16 24 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 25 H 0.13 2.92 8.05 -2.39 -0.02 2.90 16 26 H 0.08 2.69 8.05 -2.39 -0.02 2.67 16 27 H 0.03 1.42 7.25 -2.39 -0.02 1.40 16 28 H 0.07 1.99 7.92 -2.39 -0.02 1.98 16 29 H 0.04 1.57 7.02 -2.39 -0.02 1.55 16 30 H 0.08 1.47 7.90 -2.39 -0.02 1.45 16 31 H 0.08 1.55 7.92 -2.39 -0.02 1.53 16 32 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -68.15 272.66 7.02 -61.13 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 1.10 Total: 18.64 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: 5.40 Total: -17.45 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: -1.47 Total: -71.88 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.04 Total: -35.39 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -68.15 7.02 -61.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300904787.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.893 kcal (2) G-P(sol) polarization free energy of solvation -68.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds