Wall clock time and date at job start Thu Apr 9 2020 11:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47263 * 2 1 4 4 H 1.09000 * 109.47647 * 54.35938 * 3 2 1 5 5 C 1.50696 * 109.47294 * 174.36272 * 3 2 1 6 6 H 1.08001 * 120.00230 * 25.66373 * 5 3 2 7 7 C 1.37884 * 120.00212 * 205.66166 * 5 3 2 8 8 N 1.31511 * 119.99744 * 353.27746 * 7 5 3 9 9 Si 1.86791 * 120.00088 * 173.26940 * 7 5 3 10 10 H 1.48503 * 109.47253 * 60.00765 * 9 7 5 11 11 H 1.48508 * 109.47226 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47620 * 300.00452 * 9 7 5 13 13 N 1.46503 * 109.46891 * 294.36278 * 3 2 1 14 14 C 1.38406 * 120.00483 * 84.99828 * 13 3 2 15 15 N 1.32497 * 119.21100 * 359.73557 * 14 13 3 16 16 C 1.32276 * 120.73668 * 179.71633 * 15 14 13 17 17 C 1.38606 * 119.19861 * 0.54305 * 16 15 14 18 18 C 1.50697 * 120.72062 * 179.75411 * 17 16 15 19 19 C 1.38605 * 118.55708 * 359.72848 * 17 16 15 20 20 N 1.32278 * 119.19522 * 0.02562 * 19 17 16 21 21 H 1.09005 * 109.47357 * 299.99973 * 1 2 3 22 22 H 1.09000 * 109.47312 * 59.99629 * 1 2 3 23 23 H 1.09003 * 109.47397 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46856 * 240.00187 * 2 1 3 25 25 H 1.08997 * 109.47438 * 119.99867 * 2 1 3 26 26 H 0.97001 * 120.00047 * 354.66047 * 8 7 5 27 27 H 0.97006 * 119.99989 * 264.99231 * 13 3 2 28 28 H 1.08001 * 120.40231 * 180.24435 * 16 15 14 29 29 H 1.09006 * 109.46893 * 269.96939 * 18 17 16 30 30 H 1.08995 * 109.47805 * 29.97323 * 18 17 16 31 31 H 1.08996 * 109.47260 * 149.97922 * 18 17 16 32 32 H 1.08000 * 120.40462 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5965 1.9847 0.8351 5 6 3.5404 1.4448 0.1396 6 1 4.1144 0.5897 -0.1859 7 6 4.1807 2.5385 0.6828 8 7 3.4999 3.6299 0.9567 9 14 6.0148 2.4699 1.0298 10 1 6.7490 2.2167 -0.2359 11 1 6.4577 3.7636 1.6091 12 1 6.2959 1.3749 1.9927 13 7 1.6655 2.0928 -1.2583 14 6 0.4168 2.6745 -1.3919 15 7 -0.4298 2.6295 -0.3737 16 6 -1.6288 3.1805 -0.4665 17 6 -1.9986 3.7997 -1.6501 18 6 -3.3581 4.4335 -1.7953 19 6 -1.0907 3.8237 -2.6971 20 7 0.0942 3.2580 -2.5368 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 2.5651 3.6941 0.7059 27 1 2.2929 2.1157 -1.9978 28 1 -2.3131 3.1441 0.3683 29 1 -4.0636 3.6962 -2.1784 30 1 -3.6981 4.7910 -0.8234 31 1 -3.2960 5.2716 -2.4893 32 1 -1.3478 4.2977 -3.6328 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306530074.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:54:00 Heat of formation + Delta-G solvation = 39.107075 kcal Electronic energy + Delta-G solvation = -15105.002800 eV Core-core repulsion = 12679.356590 eV Total energy + Delta-G solvation = -2425.646210 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.30037 -36.46394 -33.38926 -32.95842 -32.03350 -30.79029 -27.13279 -25.41465 -24.08855 -22.97609 -21.66355 -20.02947 -17.78717 -16.99184 -16.45498 -14.89151 -14.32838 -14.07202 -13.83558 -13.74540 -13.30332 -12.98027 -12.86911 -12.50230 -12.32468 -12.14202 -11.06761 -10.86828 -10.80583 -10.52096 -10.35787 -10.17244 -10.04852 -9.92190 -9.22061 -8.69340 -8.67317 -8.32919 -6.94607 -6.55798 -4.38518 1.82402 1.85723 3.35374 3.36776 3.56635 3.94565 4.40214 4.58689 4.87657 5.09892 5.24884 5.30672 5.41396 5.68098 5.77288 5.99497 6.03206 6.03470 6.08590 6.24627 6.43593 6.67179 6.83542 6.85051 6.96370 7.11068 7.33052 7.67624 7.78432 8.13892 8.27008 8.55946 8.71927 9.22596 9.42690 10.80406 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038115 B = 0.008101 C = 0.007362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.439024 B = 3455.729558 C = 3802.602192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 C 0.251 3.749 4 H 0.059 0.941 5 C -0.608 4.608 6 H 0.057 0.943 7 C 0.032 3.968 8 N -0.885 5.885 9 Si 1.070 2.930 10 H -0.286 1.286 11 H -0.282 1.282 12 H -0.284 1.284 13 N -0.664 5.664 14 C 0.557 3.443 15 N -0.555 5.555 16 C 0.189 3.811 17 C -0.297 4.297 18 C -0.082 4.082 19 C 0.190 3.810 20 N -0.588 5.588 21 H 0.057 0.943 22 H 0.042 0.958 23 H 0.026 0.974 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.278 0.722 27 H 0.398 0.602 28 H 0.153 0.847 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.471 -0.668 -3.821 10.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.157 4.157 3 C 0.152 3.848 4 H 0.077 0.923 5 C -0.646 4.646 6 H 0.075 0.925 7 C -0.178 4.178 8 N -0.518 5.518 9 Si 0.897 3.103 10 H -0.212 1.212 11 H -0.207 1.207 12 H -0.211 1.211 13 N -0.296 5.296 14 C 0.201 3.799 15 N -0.278 5.278 16 C 0.018 3.982 17 C -0.307 4.307 18 C -0.140 4.140 19 C 0.020 3.980 20 N -0.311 5.311 21 H 0.076 0.924 22 H 0.061 0.939 23 H 0.045 0.955 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.235 0.765 28 H 0.170 0.830 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.130 -0.399 -2.842 7.686 hybrid contribution -1.938 -0.402 -1.176 2.302 sum -9.068 -0.801 -4.018 9.950 Atomic orbital electron populations 1.21826 0.97219 0.98279 1.01917 1.21833 0.94188 0.99236 1.00416 1.19037 0.94687 0.88484 0.82634 0.92317 1.22168 0.91181 1.04957 1.46330 0.92514 1.26051 1.06755 0.92125 0.92864 1.70731 1.11915 1.27413 1.41724 0.83543 0.73843 0.76228 0.76702 1.21208 1.20679 1.21066 1.46806 1.08905 1.55150 1.18731 1.20012 0.88511 0.87011 0.84318 1.68212 1.04314 1.24245 1.31061 1.22722 0.91754 0.88286 0.95419 1.21004 1.00200 1.11431 0.98092 1.20327 0.92666 0.99265 1.01787 1.22606 0.87382 0.90779 0.97218 1.68018 1.20617 1.17376 1.25126 0.92398 0.93876 0.95498 0.93862 0.92190 0.91086 0.76529 0.83005 0.92448 0.92236 0.92322 0.83128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 8.44 37.15 0.31 -2.35 16 2 C -0.12 -2.56 5.58 -26.74 -0.15 -2.71 16 3 C 0.25 6.22 1.72 -69.08 -0.12 6.10 16 4 H 0.06 1.62 6.50 -51.93 -0.34 1.28 16 5 C -0.61 -16.24 8.49 -34.44 -0.29 -16.53 16 6 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 7 C 0.03 0.87 5.45 -17.82 -0.10 0.77 16 8 N -0.89 -26.16 13.56 55.43 0.75 -25.41 16 9 Si 1.07 24.12 29.91 -169.99 -5.08 19.04 16 10 H -0.29 -6.17 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.66 -15.64 5.11 -56.93 -0.29 -15.93 16 14 C 0.56 12.40 7.03 -322.81 -2.27 10.13 16 15 N -0.56 -11.63 6.35 -13.93 -0.09 -11.72 16 16 C 0.19 3.21 11.00 -17.22 -0.19 3.02 16 17 C -0.30 -4.51 5.91 -104.35 -0.62 -5.13 16 18 C -0.08 -0.88 10.06 36.00 0.36 -0.52 16 19 C 0.19 3.15 11.00 -17.22 -0.19 2.96 16 20 N -0.59 -12.10 10.46 -13.93 -0.15 -12.24 16 21 H 0.06 1.16 7.69 -51.93 -0.40 0.76 16 22 H 0.04 0.89 5.57 -51.93 -0.29 0.60 16 23 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.28 8.41 6.93 -40.82 -0.28 8.13 16 27 H 0.40 9.35 8.71 -40.82 -0.36 8.99 16 28 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 31 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 32 H 0.15 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 269.49 15.07 4.06 4.06 Total: -1.00 -29.84 269.49 -8.29 -38.13 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -4.25 Total: 8.32 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -3.25 Total: -4.25 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: 0.23 Total: -65.30 kcal Atomic # 14 Polarization: 24.12 SS G_CDS: -5.08 Total: 19.04 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.84 -8.29 -38.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306530074.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.237 kcal (2) G-P(sol) polarization free energy of solvation -29.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds