Wall clock time and date at job start Thu Apr 9 2020 11:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99859 * 2 1 4 4 H 1.48499 * 109.46944 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47196 * 299.99968 * 3 2 1 6 6 H 1.48504 * 109.46984 * 60.00346 * 3 2 1 7 7 C 1.37875 * 120.00370 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00422 * 173.59550 * 7 2 1 9 9 C 1.50700 * 119.99645 * 353.59831 * 7 2 1 10 10 C 1.53009 * 115.54828 * 85.44314 * 9 7 2 11 11 N 1.46899 * 109.46703 * 65.04935 * 10 9 7 12 12 C 1.46909 * 110.99566 * 185.34908 * 11 10 9 13 13 C 1.50705 * 109.46911 * 180.02562 * 12 11 10 14 14 C 1.39869 * 125.89851 * 95.02345 * 13 12 11 15 15 C 1.35316 * 107.91665 * 179.97438 * 14 13 12 16 16 N 1.34943 * 107.74723 * 359.97438 * 15 14 13 17 17 H 0.97002 * 126.03636 * 179.97438 * 16 15 14 18 18 N 1.30840 * 125.89704 * 275.02514 * 13 12 11 19 19 C 1.53000 * 117.49894 * 231.10956 * 9 7 2 20 20 C 1.52995 * 117.50074 * 299.77536 * 9 7 2 21 21 H 0.97000 * 119.99759 * 359.97438 * 1 2 3 22 22 H 1.08992 * 109.46892 * 305.04796 * 10 9 7 23 23 H 1.08997 * 109.46606 * 185.04541 * 10 9 7 24 24 H 1.00898 * 111.00263 * 61.40220 * 11 10 9 25 25 H 1.08993 * 109.46810 * 59.99952 * 12 11 10 26 26 H 1.08997 * 109.47039 * 299.99879 * 12 11 10 27 27 H 1.07991 * 126.04134 * 0.02562 * 14 13 12 28 28 H 1.07999 * 126.12161 * 180.02562 * 15 14 13 29 29 H 1.08998 * 117.49841 * 215.00414 * 19 9 7 30 30 H 1.08996 * 117.49761 * 0.03072 * 19 9 7 31 31 H 1.08998 * 117.49916 * 359.97314 * 20 9 7 32 32 H 1.08998 * 117.50047 * 144.97434 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0795 -1.1970 -0.1038 9 6 1.2581 -2.4950 0.1466 10 6 0.7037 -3.0870 -1.1508 11 7 1.8170 -3.4589 -2.0342 12 6 1.3228 -3.9136 -3.3408 13 6 2.4906 -4.2862 -4.2175 14 6 3.0159 -5.5722 -4.3811 15 6 4.0535 -5.4911 -5.2459 16 7 4.1799 -4.1998 -5.6168 17 1 4.8416 -3.8446 -6.2307 18 7 3.1882 -3.4626 -4.9570 19 6 1.7458 -3.4728 1.2175 20 6 0.4401 -2.7006 1.4231 21 1 -0.4850 0.8401 0.0004 22 1 0.0763 -2.3476 -1.6485 23 1 0.1103 -3.9721 -0.9217 24 1 2.4008 -4.1605 -1.6043 25 1 0.7545 -3.1125 -3.8131 26 1 0.6800 -4.7831 -3.2036 27 1 2.6563 -6.4710 -3.9026 28 1 4.6695 -6.3128 -5.5800 29 1 1.6717 -4.5379 0.9978 30 1 2.6062 -3.1750 1.8167 31 1 0.4422 -1.8951 2.1574 32 1 -0.4931 -3.2573 1.3386 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308509825.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:54:18 Heat of formation + Delta-G solvation = 101.090488 kcal Electronic energy + Delta-G solvation = -14559.086699 eV Core-core repulsion = 12136.128291 eV Total energy + Delta-G solvation = -2422.958408 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.93116 -36.97527 -34.55647 -31.76298 -31.20662 -29.78284 -26.74551 -25.22910 -23.07288 -21.34097 -20.95320 -19.56030 -18.80787 -17.97443 -16.09625 -15.00917 -14.61867 -14.38912 -13.74214 -13.56013 -13.45140 -13.38331 -12.98781 -12.46843 -11.46709 -11.38542 -11.13509 -10.86389 -10.57471 -10.36308 -10.35275 -10.09400 -9.46100 -9.21220 -8.70337 -8.60986 -8.28408 -7.97232 -7.44948 -5.86829 -3.87315 2.05314 2.93771 3.04235 3.40383 3.48119 3.53559 4.56575 4.81239 4.93449 5.12711 5.43660 5.50577 5.58464 5.80105 5.89926 6.01918 6.19626 6.29530 6.41744 6.57305 6.71146 6.78402 6.81532 6.96266 7.19627 7.39872 7.55163 7.66475 7.89730 8.02374 8.07265 8.25308 8.65573 9.11941 9.75575 11.23344 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028209 B = 0.007447 C = 0.006414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.338853 B = 3758.952429 C = 4364.703282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.287 1.287 7 C -0.466 4.466 8 H 0.059 0.941 9 C 0.052 3.948 10 C 0.108 3.892 11 N -0.661 5.661 12 C 0.136 3.864 13 C 0.090 3.910 14 C -0.270 4.270 15 C 0.048 3.952 16 N -0.484 5.484 17 H 0.435 0.565 18 N -0.270 5.270 19 C -0.216 4.216 20 C -0.158 4.158 21 H 0.256 0.744 22 H 0.078 0.922 23 H -0.004 1.004 24 H 0.332 0.668 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.144 0.856 28 H 0.172 0.828 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.759 -11.039 -8.318 14.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.505 4.505 8 H 0.077 0.923 9 C 0.051 3.949 10 C -0.020 4.020 11 N -0.292 5.292 12 C 0.005 3.995 13 C -0.078 4.078 14 C -0.300 4.300 15 C -0.099 4.099 16 N -0.192 5.192 17 H 0.279 0.721 18 N -0.093 5.093 19 C -0.253 4.253 20 C -0.196 4.196 21 H 0.066 0.934 22 H 0.096 0.904 23 H 0.014 0.986 24 H 0.149 0.851 25 H 0.102 0.898 26 H 0.057 0.943 27 H 0.161 0.839 28 H 0.189 0.811 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.844 -9.068 -8.903 13.600 hybrid contribution 0.385 -0.728 0.155 0.838 sum 5.229 -9.796 -8.748 14.136 Atomic orbital electron populations 1.70017 1.05774 1.25960 1.50760 1.24926 0.94752 0.98694 0.95098 0.86609 0.80357 0.84203 0.77251 1.19840 1.21224 1.21329 1.20353 0.92885 0.88404 1.48808 0.92264 1.18823 0.97124 0.93744 0.85179 1.21568 0.90456 0.95948 0.94048 1.60210 1.21994 1.44833 1.02143 1.20243 0.90525 0.98889 0.89840 1.22386 0.97496 0.91188 0.96752 1.21465 1.02103 0.98649 1.07762 1.22485 0.99889 0.88291 0.99235 1.46444 1.28394 1.05765 1.38592 0.72144 1.77460 1.01428 1.18454 1.12006 1.22994 0.98504 0.95447 1.08396 1.22517 0.91945 1.01152 1.04005 0.93442 0.90376 0.98582 0.85140 0.89834 0.94296 0.83854 0.81112 0.92157 0.90576 0.90090 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.79 12.92 55.43 0.72 -25.07 16 2 C 0.07 1.89 5.39 -17.82 -0.10 1.80 16 3 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 7 C -0.47 -13.14 8.74 -34.44 -0.30 -13.44 16 8 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 9 C 0.05 1.30 1.55 -155.66 -0.24 1.06 16 10 C 0.11 2.46 5.51 -3.82 -0.02 2.44 16 11 N -0.66 -13.57 6.37 -115.05 -0.73 -14.30 16 12 C 0.14 2.38 6.24 -4.97 -0.03 2.35 16 13 C 0.09 1.49 6.73 -82.40 -0.55 0.94 16 14 C -0.27 -3.58 10.74 -40.01 -0.43 -4.01 16 15 C 0.05 0.52 11.99 -17.23 -0.21 0.32 16 16 N -0.48 -6.04 7.36 30.44 0.22 -5.82 16 17 H 0.44 3.85 8.96 -182.61 -1.64 2.21 16 18 N -0.27 -4.70 12.70 33.67 0.43 -4.27 16 19 C -0.22 -4.77 9.96 -26.69 -0.27 -5.04 16 20 C -0.16 -3.77 9.41 -26.69 -0.25 -4.03 16 21 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 22 H 0.08 1.98 8.13 -51.93 -0.42 1.56 16 23 H 0.00 -0.08 8.09 -51.93 -0.42 -0.50 16 24 H 0.33 6.42 8.78 -39.29 -0.34 6.07 16 25 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 28 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 31 H 0.08 2.07 8.14 -51.93 -0.42 1.64 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 281.51 15.07 4.24 4.24 Total: -1.00 -32.07 281.51 -8.29 -40.36 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.75 Total: 5.31 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -2.40 Total: -17.62 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 0.64 Total: -49.46 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.07 -8.29 -40.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308509825.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.455 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds