Wall clock time and date at job start Thu Apr 9 2020 11:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99859 * 2 1 4 4 H 1.48499 * 109.46944 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47196 * 299.99968 * 3 2 1 6 6 H 1.48504 * 109.46984 * 60.00346 * 3 2 1 7 7 C 1.37875 * 120.00370 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00422 * 173.59550 * 7 2 1 9 9 C 1.50700 * 119.99645 * 353.59831 * 7 2 1 10 10 C 1.53009 * 115.54828 * 85.44314 * 9 7 2 11 11 N 1.46899 * 109.46703 * 65.04935 * 10 9 7 12 12 C 1.46909 * 110.99566 * 185.34908 * 11 10 9 13 13 C 1.50705 * 109.46911 * 180.02562 * 12 11 10 14 14 C 1.39869 * 125.89851 * 95.02345 * 13 12 11 15 15 C 1.35316 * 107.91665 * 179.97438 * 14 13 12 16 16 N 1.34943 * 107.74723 * 359.97438 * 15 14 13 17 17 H 0.97002 * 126.03636 * 179.97438 * 16 15 14 18 18 N 1.30840 * 125.89704 * 275.02514 * 13 12 11 19 19 C 1.53000 * 117.49894 * 231.10956 * 9 7 2 20 20 C 1.52995 * 117.50074 * 299.77536 * 9 7 2 21 21 H 0.97000 * 119.99759 * 359.97438 * 1 2 3 22 22 H 1.08992 * 109.46892 * 305.04796 * 10 9 7 23 23 H 1.08997 * 109.46606 * 185.04541 * 10 9 7 24 24 H 1.00898 * 111.00263 * 61.40220 * 11 10 9 25 25 H 1.08993 * 109.46810 * 59.99952 * 12 11 10 26 26 H 1.08997 * 109.47039 * 299.99879 * 12 11 10 27 27 H 1.07991 * 126.04134 * 0.02562 * 14 13 12 28 28 H 1.07999 * 126.12161 * 180.02562 * 15 14 13 29 29 H 1.08998 * 117.49841 * 215.00414 * 19 9 7 30 30 H 1.08996 * 117.49761 * 0.03072 * 19 9 7 31 31 H 1.08998 * 117.49916 * 359.97314 * 20 9 7 32 32 H 1.08998 * 117.50047 * 144.97434 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0795 -1.1970 -0.1038 9 6 1.2581 -2.4950 0.1466 10 6 0.7037 -3.0870 -1.1508 11 7 1.8170 -3.4589 -2.0342 12 6 1.3228 -3.9136 -3.3408 13 6 2.4906 -4.2862 -4.2175 14 6 3.0159 -5.5722 -4.3811 15 6 4.0535 -5.4911 -5.2459 16 7 4.1799 -4.1998 -5.6168 17 1 4.8416 -3.8446 -6.2307 18 7 3.1882 -3.4626 -4.9570 19 6 1.7458 -3.4728 1.2175 20 6 0.4401 -2.7006 1.4231 21 1 -0.4850 0.8401 0.0004 22 1 0.0763 -2.3476 -1.6485 23 1 0.1103 -3.9721 -0.9217 24 1 2.4008 -4.1605 -1.6043 25 1 0.7545 -3.1125 -3.8131 26 1 0.6800 -4.7831 -3.2036 27 1 2.6563 -6.4710 -3.9026 28 1 4.6695 -6.3128 -5.5800 29 1 1.6717 -4.5379 0.9978 30 1 2.6062 -3.1750 1.8167 31 1 0.4422 -1.8951 2.1574 32 1 -0.4931 -3.2573 1.3386 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308509825.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:54:18 Heat of formation + Delta-G solvation = 78.178969 kcal Electronic energy + Delta-G solvation = -14560.080217 eV Core-core repulsion = 12136.128291 eV Total energy + Delta-G solvation = -2423.951926 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.96545 -38.79059 -36.11459 -33.89107 -32.44485 -30.78762 -28.32407 -27.26445 -24.70651 -22.82306 -22.28547 -21.03447 -20.48258 -18.93373 -18.03047 -16.79259 -16.33593 -15.89176 -15.35372 -15.15434 -14.78885 -14.37714 -14.33143 -14.11817 -13.31959 -13.11120 -12.88742 -12.65643 -12.55853 -12.33016 -11.97651 -11.47815 -11.33016 -10.71922 -10.44198 -10.32662 -9.87967 -9.59168 -9.02228 -8.03086 -6.08293 1.06382 1.39731 1.42479 1.53012 1.85610 2.13750 2.48225 3.26928 3.42362 3.74825 3.83559 4.09287 4.38488 4.47746 4.58766 4.67063 4.75891 4.77324 4.86175 4.94140 5.03184 5.10047 5.19477 5.32303 5.68087 5.71839 5.78004 5.90331 6.35583 6.51935 6.58770 6.75151 6.86660 6.95060 7.56551 9.06251 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028209 B = 0.007447 C = 0.006414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.338853 B = 3758.952429 C = 4364.703282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.021 3.979 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.279 1.279 7 C -0.479 4.479 8 H 0.042 0.958 9 C 0.021 3.979 10 C 0.124 3.876 11 N -0.676 5.676 12 C 0.140 3.860 13 C 0.069 3.931 14 C -0.288 4.288 15 C 0.074 3.926 16 N -0.475 5.475 17 H 0.450 0.550 18 N -0.329 5.329 19 C -0.187 4.187 20 C -0.163 4.163 21 H 0.256 0.744 22 H 0.041 0.959 23 H 0.017 0.983 24 H 0.339 0.661 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.164 0.836 28 H 0.225 0.775 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.040 -13.007 -8.903 16.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.177 4.177 3 Si 0.769 3.231 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.517 4.517 8 H 0.061 0.939 9 C 0.020 3.980 10 C -0.005 4.005 11 N -0.308 5.308 12 C 0.010 3.990 13 C -0.097 4.097 14 C -0.318 4.318 15 C -0.074 4.074 16 N -0.185 5.185 17 H 0.296 0.704 18 N -0.154 5.154 19 C -0.224 4.224 20 C -0.201 4.201 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.035 0.965 24 H 0.157 0.843 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.182 0.818 28 H 0.241 0.759 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.138 -11.035 -9.492 15.797 hybrid contribution 0.059 -0.174 0.276 0.332 sum 6.198 -11.210 -9.216 15.780 Atomic orbital electron populations 1.70105 1.06738 1.26491 1.51744 1.25554 0.95531 1.01472 0.95186 0.85760 0.79186 0.80904 0.77285 1.19753 1.21290 1.20499 1.20568 0.92348 0.90364 1.48445 0.93941 1.18931 0.98438 0.93927 0.86703 1.21200 0.90692 0.95605 0.92979 1.60055 1.21737 1.46013 1.02950 1.20158 0.91503 0.98940 0.88421 1.22338 0.97526 0.92843 0.97042 1.21770 1.03002 0.97963 1.09049 1.23273 0.98791 0.88447 0.96853 1.46462 1.27581 1.06319 1.38126 0.70444 1.77343 1.03561 1.20614 1.13913 1.22981 0.97101 0.96600 1.05697 1.22439 0.93565 1.01249 1.02888 0.93508 0.94038 0.96473 0.84255 0.92143 0.91801 0.81843 0.75872 0.88861 0.90814 0.92544 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.04 12.92 21.45 0.28 -53.76 16 2 C 0.02 1.23 5.39 84.65 0.46 1.68 16 3 Si 0.94 46.22 29.54 68.60 2.03 48.25 16 4 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 7 C -0.48 -27.38 8.74 25.60 0.22 -27.16 16 8 H 0.04 2.50 7.82 -2.91 -0.02 2.48 16 9 C 0.02 1.03 1.55 -52.93 -0.08 0.95 16 10 C 0.12 5.64 5.51 86.31 0.48 6.11 16 11 N -0.68 -27.60 6.37 -517.91 -3.30 -30.90 16 12 C 0.14 4.90 6.24 85.56 0.53 5.43 16 13 C 0.07 2.24 6.73 43.10 0.29 2.53 16 14 C -0.29 -6.85 10.74 21.99 0.24 -6.62 16 15 C 0.07 1.33 11.99 83.54 1.00 2.33 16 16 N -0.48 -10.82 7.36 -57.59 -0.42 -11.24 16 17 H 0.45 6.95 8.96 -213.33 -1.91 5.04 16 18 N -0.33 -11.34 12.70 -47.38 -0.60 -11.94 16 19 C -0.19 -7.92 9.96 30.62 0.30 -7.61 16 20 C -0.16 -7.72 9.41 30.62 0.29 -7.43 16 21 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 22 H 0.04 2.16 8.13 -2.39 -0.02 2.14 16 23 H 0.02 0.70 8.09 -2.39 -0.02 0.68 16 24 H 0.34 12.74 8.78 -89.70 -0.79 11.95 16 25 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.16 3.08 8.06 -2.92 -0.02 3.05 16 28 H 0.22 1.49 8.06 -2.91 -0.02 1.46 16 29 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 30 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 31 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -70.52 281.51 0.13 -70.39 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -1.57 Total: 18.99 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 3.73 Total: -29.79 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -4.05 Total: -107.84 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -70.52 0.13 -70.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308509825.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.568 kcal (2) G-P(sol) polarization free energy of solvation -70.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds