Wall clock time and date at job start Thu Apr 9 2020 11:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00079 * 2 1 4 4 N 1.46901 * 109.47376 * 124.14073 * 3 2 1 5 5 C 1.46904 * 110.99641 * 300.28365 * 4 3 2 6 6 C 1.50697 * 109.47005 * 288.16074 * 5 4 3 7 7 H 1.08002 * 119.99889 * 354.74651 * 6 5 4 8 8 C 1.37871 * 120.00039 * 174.74980 * 6 5 4 9 9 N 1.31518 * 120.00121 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00267 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47051 * 89.99607 * 10 8 6 12 12 H 1.48504 * 109.47163 * 209.99808 * 10 8 6 13 13 H 1.48497 * 109.46875 * 329.99934 * 10 8 6 14 14 C 1.46904 * 110.99817 * 64.23255 * 4 3 2 15 15 C 1.50704 * 109.46633 * 66.04816 * 14 4 3 16 16 C 1.34512 * 125.79033 * 90.00304 * 15 14 4 17 17 C 1.41378 * 106.84072 * 179.97438 * 16 15 14 18 18 C 1.34514 * 106.84172 * 359.97438 * 17 16 15 19 19 O 1.34300 * 108.41914 * 359.73863 * 18 17 16 20 20 H 1.08009 * 119.99557 * 179.97438 * 1 2 3 21 21 H 1.07995 * 120.00383 * 0.02562 * 1 2 3 22 22 H 1.08001 * 119.99971 * 179.97438 * 2 1 3 23 23 H 1.08994 * 109.46727 * 4.14072 * 3 2 1 24 24 H 1.09002 * 109.46937 * 244.14391 * 3 2 1 25 25 H 1.09000 * 109.47215 * 48.16415 * 5 4 3 26 26 H 1.09005 * 109.46429 * 168.16104 * 5 4 3 27 27 H 0.97000 * 120.00227 * 179.97438 * 9 8 6 28 28 H 1.08993 * 109.47177 * 186.04689 * 14 4 3 29 29 H 1.08998 * 109.47338 * 306.04883 * 14 4 3 30 30 H 1.08004 * 126.58149 * 0.02927 * 16 15 14 31 31 H 1.08006 * 126.57840 * 179.97438 * 17 16 15 32 32 H 1.07998 * 125.78954 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9815 1.3406 1.1463 5 6 2.2476 1.2140 2.4125 6 6 1.4880 2.4873 2.6823 7 1 1.6110 3.3382 2.0286 8 6 0.6362 2.5660 3.7635 9 7 0.4861 1.5296 4.5592 10 14 -0.3049 4.1445 4.0983 11 1 -1.6091 4.1032 3.3894 12 1 -0.5392 4.2809 5.5584 13 1 0.4856 5.3043 3.6134 14 6 4.0114 0.2996 1.0284 15 6 4.8989 0.6025 -0.1513 16 6 6.0228 1.3409 -0.1211 17 6 6.5327 1.3649 -1.4395 18 6 5.6901 0.6393 -2.1965 19 8 4.7058 0.1749 -1.4097 20 1 -0.5400 -0.9354 -0.0004 21 1 -0.5400 0.9352 -0.0004 22 1 1.8500 -0.9353 0.0004 23 1 1.3575 2.1322 0.0742 24 1 2.6333 1.3956 -0.9248 25 1 1.5480 0.3808 2.3453 26 1 2.9522 1.0323 3.2242 27 1 -0.1129 1.5851 5.3201 28 1 4.6112 0.2772 1.9381 29 1 3.5336 -0.6695 0.8843 30 1 6.4537 1.8222 0.7445 31 1 7.4271 1.8692 -1.7746 32 1 5.7909 0.4570 -3.2562 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610675076.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:51 Heat of formation + Delta-G solvation = 41.959977 kcal Electronic energy + Delta-G solvation = -14887.568954 eV Core-core repulsion = 12429.753704 eV Total energy + Delta-G solvation = -2457.815250 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.23711 -37.35281 -32.88738 -32.76330 -32.23579 -29.97599 -27.07375 -25.93286 -23.71906 -21.41522 -21.01538 -20.23877 -18.85280 -16.94267 -16.16715 -15.92135 -15.13781 -14.55595 -14.28780 -14.19121 -13.65050 -12.84703 -12.51923 -12.41638 -12.16854 -11.97619 -11.29120 -11.18708 -10.95091 -10.71918 -10.63210 -10.45827 -9.97616 -9.61604 -9.28144 -8.71030 -8.41258 -8.16216 -7.29490 -6.01059 -4.01976 2.03828 2.88832 2.96571 3.31696 3.32562 3.38903 3.43657 4.44311 4.98914 5.16291 5.30810 5.32832 5.34941 5.55943 5.67479 5.89995 5.97226 6.08742 6.17022 6.27077 6.40406 6.45480 6.68824 6.81277 7.15944 7.21468 7.33297 7.43496 7.48099 7.80860 8.04285 8.15806 8.51371 9.05626 9.61832 11.09484 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035756 B = 0.007412 C = 0.006786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.895645 B = 3776.520502 C = 4125.209258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.179 4.179 3 C 0.090 3.910 4 N -0.524 5.524 5 C 0.190 3.810 6 C -0.502 4.502 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.125 3.875 15 C 0.016 3.984 16 C -0.206 4.206 17 C -0.213 4.213 18 C -0.058 4.058 19 O -0.178 6.178 20 H 0.085 0.915 21 H 0.097 0.903 22 H 0.096 0.904 23 H 0.085 0.915 24 H 0.062 0.938 25 H 0.009 0.991 26 H 0.025 0.975 27 H 0.261 0.739 28 H 0.099 0.901 29 H 0.044 0.956 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.104 -2.911 -10.484 12.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.199 4.199 3 C -0.038 4.038 4 N -0.248 5.248 5 C 0.065 3.935 6 C -0.541 4.541 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.003 4.003 15 C -0.035 4.035 16 C -0.226 4.226 17 C -0.233 4.233 18 C -0.126 4.126 19 O -0.074 6.074 20 H 0.104 0.896 21 H 0.115 0.885 22 H 0.114 0.886 23 H 0.103 0.897 24 H 0.080 0.920 25 H 0.027 0.973 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.117 0.883 29 H 0.062 0.938 30 H 0.164 0.836 31 H 0.160 0.840 32 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 7.015 -2.676 -10.375 12.807 hybrid contribution -0.730 0.118 0.280 0.791 sum 6.284 -2.557 -10.095 12.163 Atomic orbital electron populations 1.23691 0.95977 1.01145 1.00758 1.23502 0.96698 0.99710 1.00010 1.21249 0.94631 0.94498 0.93410 1.62498 1.13865 1.43734 1.04684 1.19816 0.92302 0.97512 0.83844 1.21102 1.23711 0.98528 1.10779 0.91931 1.24956 0.96902 0.96490 0.96132 1.69956 1.37946 1.29686 1.16234 0.86535 0.80124 0.83722 0.77275 1.20771 1.21294 1.19789 1.20610 0.93339 0.94942 0.91390 1.22648 0.97586 0.99434 0.83844 1.21536 0.98045 1.04671 0.98341 1.21780 1.02503 1.04992 0.93981 1.23871 0.89909 1.02087 0.96727 1.84039 1.44493 1.60221 1.18670 0.89642 0.88463 0.88632 0.89684 0.92007 0.97267 0.95703 0.92982 0.88337 0.93820 0.83631 0.84002 0.78776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 14.32 29.01 0.42 -2.82 16 2 C -0.18 -3.39 7.42 -36.03 -0.27 -3.66 16 3 C 0.09 1.81 5.49 -4.97 -0.03 1.78 16 4 N -0.52 -11.32 4.65 -238.96 -1.11 -12.43 16 5 C 0.19 4.84 4.58 -4.98 -0.02 4.82 16 6 C -0.50 -13.99 8.53 -34.44 -0.29 -14.28 16 7 H 0.06 1.75 7.66 -52.49 -0.40 1.35 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16 10 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 C 0.13 2.30 5.33 -4.97 -0.03 2.27 16 15 C 0.02 0.26 5.88 -35.62 -0.21 0.05 16 16 C -0.21 -3.25 10.81 -39.71 -0.43 -3.68 16 17 C -0.21 -2.88 10.91 -39.70 -0.43 -3.31 16 18 C -0.06 -0.76 12.09 29.42 0.36 -0.40 16 19 O -0.18 -2.88 9.94 5.72 0.06 -2.82 16 20 H 0.09 1.39 8.06 -52.48 -0.42 0.96 16 21 H 0.10 1.80 7.84 -52.49 -0.41 1.39 16 22 H 0.10 1.72 6.80 -52.49 -0.36 1.36 16 23 H 0.08 1.83 7.04 -51.93 -0.37 1.46 16 24 H 0.06 1.18 6.61 -51.93 -0.34 0.83 16 25 H 0.01 0.26 6.71 -51.93 -0.35 -0.09 16 26 H 0.02 0.67 7.81 -51.93 -0.41 0.26 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.10 1.72 7.86 -51.93 -0.41 1.31 16 29 H 0.04 0.78 6.34 -51.93 -0.33 0.45 16 30 H 0.15 2.15 8.06 -52.48 -0.42 1.73 16 31 H 0.14 1.53 8.06 -52.48 -0.42 1.10 16 32 H 0.20 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 274.77 15.07 4.14 4.14 Total: -1.00 -30.08 274.77 -6.43 -36.51 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -4.20 Total: 1.47 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -1.04 Total: -17.74 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: -0.37 Total: -38.16 kcal Atomic # 8 Polarization: -2.88 SS G_CDS: 0.06 Total: -2.82 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.08 -6.43 -36.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610675076.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.470 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds