Wall clock time and date at job start Thu Apr 9 2020 11:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00079 * 2 1 4 4 N 1.46901 * 109.47376 * 124.14073 * 3 2 1 5 5 C 1.46904 * 110.99641 * 300.28365 * 4 3 2 6 6 C 1.50697 * 109.47005 * 288.16074 * 5 4 3 7 7 H 1.08002 * 119.99889 * 354.74651 * 6 5 4 8 8 C 1.37871 * 120.00039 * 174.74980 * 6 5 4 9 9 N 1.31518 * 120.00121 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00267 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47051 * 89.99607 * 10 8 6 12 12 H 1.48504 * 109.47163 * 209.99808 * 10 8 6 13 13 H 1.48497 * 109.46875 * 329.99934 * 10 8 6 14 14 C 1.46904 * 110.99817 * 64.23255 * 4 3 2 15 15 C 1.50704 * 109.46633 * 66.04816 * 14 4 3 16 16 C 1.34512 * 125.79033 * 90.00304 * 15 14 4 17 17 C 1.41378 * 106.84072 * 179.97438 * 16 15 14 18 18 C 1.34514 * 106.84172 * 359.97438 * 17 16 15 19 19 O 1.34300 * 108.41914 * 359.73863 * 18 17 16 20 20 H 1.08009 * 119.99557 * 179.97438 * 1 2 3 21 21 H 1.07995 * 120.00383 * 0.02562 * 1 2 3 22 22 H 1.08001 * 119.99971 * 179.97438 * 2 1 3 23 23 H 1.08994 * 109.46727 * 4.14072 * 3 2 1 24 24 H 1.09002 * 109.46937 * 244.14391 * 3 2 1 25 25 H 1.09000 * 109.47215 * 48.16415 * 5 4 3 26 26 H 1.09005 * 109.46429 * 168.16104 * 5 4 3 27 27 H 0.97000 * 120.00227 * 179.97438 * 9 8 6 28 28 H 1.08993 * 109.47177 * 186.04689 * 14 4 3 29 29 H 1.08998 * 109.47338 * 306.04883 * 14 4 3 30 30 H 1.08004 * 126.58149 * 0.02927 * 16 15 14 31 31 H 1.08006 * 126.57840 * 179.97438 * 17 16 15 32 32 H 1.07998 * 125.78954 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9815 1.3406 1.1463 5 6 2.2476 1.2140 2.4125 6 6 1.4880 2.4873 2.6823 7 1 1.6110 3.3382 2.0286 8 6 0.6362 2.5660 3.7635 9 7 0.4861 1.5296 4.5592 10 14 -0.3049 4.1445 4.0983 11 1 -1.6091 4.1032 3.3894 12 1 -0.5392 4.2809 5.5584 13 1 0.4856 5.3043 3.6134 14 6 4.0114 0.2996 1.0284 15 6 4.8989 0.6025 -0.1513 16 6 6.0228 1.3409 -0.1211 17 6 6.5327 1.3649 -1.4395 18 6 5.6901 0.6393 -2.1965 19 8 4.7058 0.1749 -1.4097 20 1 -0.5400 -0.9354 -0.0004 21 1 -0.5400 0.9352 -0.0004 22 1 1.8500 -0.9353 0.0004 23 1 1.3575 2.1322 0.0742 24 1 2.6333 1.3956 -0.9248 25 1 1.5480 0.3808 2.3453 26 1 2.9522 1.0323 3.2242 27 1 -0.1129 1.5851 5.3201 28 1 4.6112 0.2772 1.9381 29 1 3.5336 -0.6695 0.8843 30 1 6.4537 1.8222 0.7445 31 1 7.4271 1.8692 -1.7746 32 1 5.7909 0.4570 -3.2562 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610675076.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:51 Heat of formation + Delta-G solvation = 23.120267 kcal Electronic energy + Delta-G solvation = -14888.385905 eV Core-core repulsion = 12429.753704 eV Total energy + Delta-G solvation = -2458.632201 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.39639 -39.01884 -34.84652 -34.19479 -33.60470 -31.45388 -28.94594 -27.39539 -25.53057 -22.82068 -22.50783 -21.51260 -20.35116 -18.43859 -17.94133 -17.29066 -16.82607 -16.26843 -15.83510 -15.64992 -15.25646 -14.41213 -14.03748 -13.67091 -13.63134 -13.47036 -13.06291 -12.74681 -12.61044 -12.59582 -12.30361 -12.19080 -12.01530 -11.33218 -10.74511 -10.58581 -10.22456 -9.36422 -9.01101 -8.16421 -6.25416 0.87283 1.41373 1.42603 1.43100 1.54136 1.80526 2.17861 2.42838 3.16231 3.46759 3.84764 4.04674 4.14321 4.23598 4.31464 4.46028 4.51642 4.63734 4.93845 4.98900 5.03793 5.14816 5.20837 5.27701 5.33307 5.66568 5.69690 5.71146 5.87434 6.07868 6.26811 6.36662 6.56324 6.89335 7.43299 8.93674 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035756 B = 0.007412 C = 0.006786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.895645 B = 3776.520502 C = 4125.209258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.190 4.190 3 C 0.097 3.903 4 N -0.533 5.533 5 C 0.206 3.794 6 C -0.517 4.517 7 H 0.057 0.943 8 C 0.007 3.993 9 N -0.931 5.931 10 Si 0.962 3.038 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.268 1.268 14 C 0.129 3.871 15 C -0.014 4.014 16 C -0.210 4.210 17 C -0.223 4.223 18 C -0.045 4.045 19 O -0.193 6.193 20 H 0.108 0.892 21 H 0.090 0.910 22 H 0.105 0.895 23 H 0.065 0.935 24 H 0.074 0.926 25 H -0.012 1.012 26 H 0.003 0.997 27 H 0.263 0.737 28 H 0.098 0.902 29 H 0.045 0.955 30 H 0.148 0.852 31 H 0.171 0.829 32 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.535 -2.436 -11.944 14.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.210 4.210 3 C -0.031 4.031 4 N -0.256 5.256 5 C 0.081 3.919 6 C -0.556 4.556 7 H 0.075 0.925 8 C -0.191 4.191 9 N -0.572 5.572 10 Si 0.787 3.213 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.192 1.192 14 C 0.002 3.998 15 C -0.064 4.064 16 C -0.230 4.230 17 C -0.242 4.242 18 C -0.112 4.112 19 O -0.090 6.090 20 H 0.126 0.874 21 H 0.109 0.891 22 H 0.123 0.877 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.006 0.994 26 H 0.021 0.979 27 H 0.072 0.928 28 H 0.117 0.883 29 H 0.064 0.936 30 H 0.166 0.834 31 H 0.188 0.812 32 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 7.459 -2.201 -11.852 14.175 hybrid contribution -0.784 -0.053 0.650 1.020 sum 6.675 -2.255 -11.202 13.233 Atomic orbital electron populations 1.23867 0.95899 1.01935 0.99622 1.23492 0.97017 0.99445 1.01010 1.21136 0.94275 0.94517 0.93184 1.62368 1.14191 1.45560 1.03514 1.19435 0.91376 0.95879 0.85232 1.21371 1.24192 0.99137 1.10857 0.92522 1.25778 0.97770 0.99729 0.95823 1.70069 1.38699 1.31689 1.16742 0.85497 0.78856 0.79714 0.77256 1.19909 1.20754 1.19229 1.20500 0.92651 0.94024 0.92672 1.22273 0.98301 1.01737 0.84113 1.21813 0.97668 1.03703 0.99775 1.22125 1.03732 1.05539 0.92783 1.24802 0.88224 1.00077 0.98120 1.84018 1.45743 1.60714 1.18483 0.87408 0.89147 0.87688 0.91693 0.90822 0.99398 0.97881 0.92781 0.88339 0.93644 0.83435 0.81166 0.74461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.29 14.32 67.78 0.97 -5.32 16 2 C -0.19 -7.15 7.42 25.65 0.19 -6.96 16 3 C 0.10 3.90 5.49 85.56 0.47 4.37 16 4 N -0.53 -23.41 4.65 -909.93 -4.23 -27.64 16 5 C 0.21 10.83 4.58 85.56 0.39 11.23 16 6 C -0.52 -29.25 8.53 25.60 0.22 -29.03 16 7 H 0.06 3.20 7.66 -2.91 -0.02 3.18 16 8 C 0.01 0.40 5.46 84.65 0.46 0.87 16 9 N -0.93 -55.50 13.29 21.45 0.28 -55.22 16 10 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 14 C 0.13 4.79 5.33 85.56 0.46 5.25 16 15 C -0.01 -0.47 5.88 24.83 0.15 -0.33 16 16 C -0.21 -6.35 10.81 22.19 0.24 -6.11 16 17 C -0.22 -5.38 10.91 22.19 0.24 -5.14 16 18 C -0.05 -1.04 12.09 66.97 0.81 -0.23 16 19 O -0.19 -5.89 9.94 -2.46 -0.02 -5.91 16 20 H 0.11 3.35 8.06 -2.91 -0.02 3.32 16 21 H 0.09 3.34 7.84 -2.91 -0.02 3.32 16 22 H 0.11 3.73 6.80 -2.91 -0.02 3.71 16 23 H 0.06 2.84 7.04 -2.39 -0.02 2.83 16 24 H 0.07 2.77 6.61 -2.39 -0.02 2.76 16 25 H -0.01 -0.66 6.71 -2.39 -0.02 -0.67 16 26 H 0.00 0.17 7.81 -2.38 -0.02 0.16 16 27 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 28 H 0.10 3.55 7.86 -2.39 -0.02 3.54 16 29 H 0.05 1.65 6.34 -2.39 -0.02 1.63 16 30 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 31 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 32 H 0.24 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -64.25 274.77 3.74 -60.51 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 1.09 Total: 13.25 kcal Atomic # 6 Polarization: -35.99 SS G_CDS: 4.60 Total: -31.39 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -3.95 Total: -82.86 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.02 Total: -5.91 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -64.25 3.74 -60.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610675076.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.626 kcal (2) G-P(sol) polarization free energy of solvation -64.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds