Wall clock time and date at job start Thu Apr 9 2020 11:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40087 * 126.03569 * 2 1 4 4 C 1.30835 * 108.20590 * 180.23355 * 3 2 1 5 5 C 1.39878 * 108.20078 * 359.77836 * 4 3 2 6 6 C 1.34943 * 126.04095 * 179.84463 * 2 1 3 7 7 C 1.50701 * 126.12458 * 0.03666 * 6 2 1 8 8 N 1.46501 * 109.47391 * 274.71524 * 7 6 2 9 9 C 1.36935 * 119.99942 * 89.99524 * 8 7 6 10 10 H 1.07991 * 120.00098 * 304.53779 * 9 8 7 11 11 C 1.38812 * 119.99473 * 124.26953 * 9 8 7 12 12 N 1.31618 * 119.99846 * 164.52381 * 11 9 8 13 13 Si 1.86799 * 120.00230 * 344.51664 * 11 9 8 14 14 H 1.48504 * 109.46908 * 91.77658 * 13 11 9 15 15 H 1.48494 * 109.47501 * 211.77493 * 13 11 9 16 16 H 1.48503 * 109.47091 * 331.77968 * 13 11 9 17 17 C 1.46504 * 119.99812 * 270.00524 * 8 7 6 18 18 C 1.52999 * 117.49855 * 183.02902 * 17 8 7 19 19 C 1.52996 * 117.50406 * 114.36699 * 17 8 7 20 20 H 1.09001 * 109.47313 * 270.15298 * 1 2 3 21 21 H 1.08996 * 109.47026 * 30.15718 * 1 2 3 22 22 H 1.09004 * 109.46978 * 150.15103 * 1 2 3 23 23 H 1.07998 * 125.90346 * 179.74468 * 4 3 2 24 24 H 1.08001 * 126.03526 * 179.97438 * 5 4 3 25 25 H 1.09003 * 109.46973 * 154.71341 * 7 6 2 26 26 H 1.09003 * 109.47414 * 34.71551 * 7 6 2 27 27 H 0.96999 * 119.99756 * 179.97438 * 12 11 9 28 28 H 1.09006 * 115.54722 * 328.69464 * 17 8 7 29 29 H 1.08998 * 117.49654 * 359.97438 * 18 17 8 30 30 H 1.09004 * 117.49820 * 145.01446 * 18 17 8 31 31 H 1.08991 * 117.50340 * 214.97828 * 19 17 8 32 32 H 1.09005 * 117.49263 * 359.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7322 -0.0051 5 6 3.5437 -0.6665 -0.0033 6 6 2.2590 -1.0911 0.0030 7 6 1.7974 -2.5257 0.0061 8 7 1.5390 -2.9527 1.3835 9 6 0.2933 -2.7904 1.9283 10 1 -0.1662 -1.8132 1.9438 11 6 -0.3812 -3.8830 2.4557 12 7 -1.4210 -3.6980 3.2412 13 14 0.1866 -5.6158 2.0505 14 1 1.1506 -6.0748 3.0827 15 1 -0.9849 -6.5279 2.0269 16 1 0.8459 -5.6222 0.7198 17 6 2.6135 -3.5531 2.1780 18 6 2.2630 -4.0430 3.5844 19 6 3.1050 -2.7778 3.4020 20 1 -0.3634 0.0027 1.0277 21 1 -0.3633 0.8885 -0.5163 22 1 -0.3633 -0.8914 -0.5115 23 1 4.4054 1.3711 -0.0103 24 1 4.4211 -1.2962 -0.0068 25 1 2.5709 -3.1572 -0.4310 26 1 0.8823 -2.6143 -0.5795 27 1 -1.8925 -4.4615 3.6094 28 1 3.3512 -4.1251 1.6150 29 1 1.2331 -3.9182 3.9186 30 1 2.7703 -4.9371 3.9469 31 1 4.1658 -2.8399 3.6445 32 1 2.6291 -1.8207 3.6158 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611265085.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:58 Heat of formation + Delta-G solvation = 132.244525 kcal Electronic energy + Delta-G solvation = -15487.595797 eV Core-core repulsion = 13065.988330 eV Total energy + Delta-G solvation = -2421.607467 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.54848 -37.28032 -33.48269 -32.40239 -31.99849 -29.52842 -26.19598 -25.64024 -23.44449 -21.55546 -20.55747 -19.97230 -19.13145 -16.82366 -16.19071 -15.34617 -14.85098 -14.40970 -13.86379 -13.77003 -13.22023 -13.05527 -12.40933 -12.19940 -11.91747 -11.83663 -11.70244 -11.19060 -10.79284 -10.53029 -10.40095 -10.06930 -9.85955 -9.54071 -9.19091 -8.73418 -8.47496 -7.89322 -6.60104 -6.12287 -3.83849 2.52133 3.17495 3.33378 3.40605 3.42743 3.48875 4.44095 4.85486 4.88774 5.15002 5.22776 5.47611 5.66859 5.75777 5.81274 5.86614 6.04618 6.10244 6.13505 6.23494 6.35762 6.41761 6.52514 6.56426 6.81892 7.02081 7.23895 7.28544 7.66416 7.98635 8.32365 8.38571 8.86976 9.51521 10.00619 10.96499 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033330 B = 0.011064 C = 0.009674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.881576 B = 2530.056595 C = 2893.744266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.359 5.359 3 N -0.320 5.320 4 C 0.036 3.964 5 C -0.288 4.288 6 C 0.099 3.901 7 C 0.200 3.800 8 N -0.563 5.563 9 C -0.292 4.292 10 H 0.071 0.929 11 C 0.060 3.940 12 N -0.894 5.894 13 Si 0.886 3.114 14 H -0.269 1.269 15 H -0.304 1.304 16 H -0.270 1.270 17 C 0.110 3.890 18 C -0.197 4.197 19 C -0.207 4.207 20 H 0.080 0.920 21 H 0.074 0.926 22 H 0.089 0.911 23 H 0.172 0.828 24 H 0.136 0.864 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.266 0.734 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.855 1.507 -5.619 8.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.141 5.141 3 N -0.142 5.142 4 C -0.149 4.149 5 C -0.318 4.318 6 C -0.032 4.032 7 C 0.073 3.927 8 N -0.282 5.282 9 C -0.421 4.421 10 H 0.089 0.911 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.714 3.286 14 H -0.195 1.195 15 H -0.232 1.232 16 H -0.194 1.194 17 C 0.002 3.998 18 C -0.235 4.235 19 C -0.247 4.247 20 H 0.098 0.902 21 H 0.093 0.907 22 H 0.107 0.893 23 H 0.189 0.811 24 H 0.154 0.846 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.137 0.863 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.715 2.431 -5.531 8.317 hybrid contribution 0.814 -1.539 0.165 1.749 sum 6.530 0.893 -5.367 8.499 Atomic orbital electron populations 1.21834 0.74419 1.03147 1.04011 1.48378 1.06459 1.03309 1.55929 1.77190 1.01790 1.09067 1.26176 1.23610 0.95001 0.95191 1.01083 1.21082 0.96335 0.94539 1.19828 1.22496 0.90943 0.92580 0.97220 1.19629 0.99466 0.85701 0.87948 1.43513 1.06924 1.70240 1.07538 1.18574 0.91276 0.94203 1.38020 0.91131 1.25851 0.94255 0.98794 0.95422 1.69863 1.21171 1.31435 1.30703 0.86768 0.77386 0.84522 0.79923 1.19494 1.23183 1.19428 1.21314 0.93167 0.98928 0.86353 1.23508 1.02716 0.96393 1.00865 1.23285 0.97357 0.96634 1.07427 0.90192 0.90746 0.89259 0.81104 0.84606 0.91576 0.91262 0.92382 0.89341 0.86336 0.90688 0.91035 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.82 10.71 59.85 0.64 2.46 16 2 N -0.36 -6.92 4.01 -63.89 -0.26 -7.18 16 3 N -0.32 -6.19 12.58 30.63 0.39 -5.81 16 4 C 0.04 0.62 12.03 -17.36 -0.21 0.41 16 5 C -0.29 -5.05 10.72 -40.01 -0.43 -5.48 16 6 C 0.10 1.89 6.51 -82.27 -0.54 1.35 16 7 C 0.20 3.83 5.88 -5.19 -0.03 3.80 16 8 N -0.56 -12.53 2.03 -167.02 -0.34 -12.87 16 9 C -0.29 -7.50 9.16 -15.06 -0.14 -7.64 16 10 H 0.07 1.98 6.30 -52.49 -0.33 1.64 16 11 C 0.06 1.60 3.73 -17.43 -0.07 1.54 16 12 N -0.89 -25.44 13.97 55.49 0.78 -24.67 16 13 Si 0.89 21.01 24.92 -169.99 -4.24 16.77 16 14 H -0.27 -6.17 5.83 56.52 0.33 -5.84 16 15 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 C 0.11 2.29 5.16 -67.93 -0.35 1.94 16 18 C -0.20 -4.25 6.72 -26.69 -0.18 -4.43 16 19 C -0.21 -4.18 10.36 -26.70 -0.28 -4.46 16 20 H 0.08 1.49 7.04 -51.93 -0.37 1.12 16 21 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 22 H 0.09 1.43 7.14 -51.93 -0.37 1.06 16 23 H 0.17 2.25 8.06 -52.49 -0.42 1.83 16 24 H 0.14 2.10 8.06 -52.49 -0.42 1.68 16 25 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 26 H 0.07 1.30 7.13 -51.93 -0.37 0.93 16 27 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 29 H 0.12 2.97 5.11 -51.93 -0.27 2.70 16 30 H 0.07 1.47 7.88 -51.93 -0.41 1.06 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.09 1.96 8.14 -51.93 -0.42 1.53 16 LS Contribution 264.21 15.07 3.98 3.98 Total: -1.00 -29.59 264.21 -5.54 -35.13 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -4.27 Total: 5.14 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -1.57 Total: -10.50 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.57 Total: -50.52 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.24 Total: 16.77 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.59 -5.54 -35.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611265085.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.371 kcal (2) G-P(sol) polarization free energy of solvation -29.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds