Wall clock time and date at job start Thu Apr 9 2020 11:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40087 * 126.03569 * 2 1 4 4 C 1.30835 * 108.20590 * 180.23355 * 3 2 1 5 5 C 1.39878 * 108.20078 * 359.77836 * 4 3 2 6 6 C 1.34943 * 126.04095 * 179.84463 * 2 1 3 7 7 C 1.50701 * 126.12458 * 0.03666 * 6 2 1 8 8 N 1.46501 * 109.47391 * 274.71524 * 7 6 2 9 9 C 1.36935 * 119.99942 * 89.99524 * 8 7 6 10 10 H 1.07991 * 120.00098 * 304.53779 * 9 8 7 11 11 C 1.38812 * 119.99473 * 124.26953 * 9 8 7 12 12 N 1.31618 * 119.99846 * 164.52381 * 11 9 8 13 13 Si 1.86799 * 120.00230 * 344.51664 * 11 9 8 14 14 H 1.48504 * 109.46908 * 91.77658 * 13 11 9 15 15 H 1.48494 * 109.47501 * 211.77493 * 13 11 9 16 16 H 1.48503 * 109.47091 * 331.77968 * 13 11 9 17 17 C 1.46504 * 119.99812 * 270.00524 * 8 7 6 18 18 C 1.52999 * 117.49855 * 183.02902 * 17 8 7 19 19 C 1.52996 * 117.50406 * 114.36699 * 17 8 7 20 20 H 1.09001 * 109.47313 * 270.15298 * 1 2 3 21 21 H 1.08996 * 109.47026 * 30.15718 * 1 2 3 22 22 H 1.09004 * 109.46978 * 150.15103 * 1 2 3 23 23 H 1.07998 * 125.90346 * 179.74468 * 4 3 2 24 24 H 1.08001 * 126.03526 * 179.97438 * 5 4 3 25 25 H 1.09003 * 109.46973 * 154.71341 * 7 6 2 26 26 H 1.09003 * 109.47414 * 34.71551 * 7 6 2 27 27 H 0.96999 * 119.99756 * 179.97438 * 12 11 9 28 28 H 1.09006 * 115.54722 * 328.69464 * 17 8 7 29 29 H 1.08998 * 117.49654 * 359.97438 * 18 17 8 30 30 H 1.09004 * 117.49820 * 145.01446 * 18 17 8 31 31 H 1.08991 * 117.50340 * 214.97828 * 19 17 8 32 32 H 1.09005 * 117.49263 * 359.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7322 -0.0051 5 6 3.5437 -0.6665 -0.0033 6 6 2.2590 -1.0911 0.0030 7 6 1.7974 -2.5257 0.0061 8 7 1.5390 -2.9527 1.3835 9 6 0.2933 -2.7904 1.9283 10 1 -0.1662 -1.8132 1.9438 11 6 -0.3812 -3.8830 2.4557 12 7 -1.4210 -3.6980 3.2412 13 14 0.1866 -5.6158 2.0505 14 1 1.1506 -6.0748 3.0827 15 1 -0.9849 -6.5279 2.0269 16 1 0.8459 -5.6222 0.7198 17 6 2.6135 -3.5531 2.1780 18 6 2.2630 -4.0430 3.5844 19 6 3.1050 -2.7778 3.4020 20 1 -0.3634 0.0027 1.0277 21 1 -0.3633 0.8885 -0.5163 22 1 -0.3633 -0.8914 -0.5115 23 1 4.4054 1.3711 -0.0103 24 1 4.4211 -1.2962 -0.0068 25 1 2.5709 -3.1572 -0.4310 26 1 0.8823 -2.6143 -0.5795 27 1 -1.8925 -4.4615 3.6094 28 1 3.3512 -4.1251 1.6150 29 1 1.2331 -3.9182 3.9186 30 1 2.7703 -4.9371 3.9469 31 1 4.1658 -2.8399 3.6445 32 1 2.6291 -1.8207 3.6158 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611265085.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:57 Heat of formation + Delta-G solvation = 113.700557 kcal Electronic energy + Delta-G solvation = -15488.399924 eV Core-core repulsion = 13065.988330 eV Total energy + Delta-G solvation = -2422.411594 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.94472 -38.97198 -35.09647 -34.09404 -33.66834 -31.11544 -27.65761 -27.26366 -25.17250 -23.21495 -22.00107 -21.61899 -20.62063 -18.69817 -17.65895 -16.94208 -16.59009 -16.01059 -15.46384 -15.23268 -14.94599 -14.53058 -13.98538 -13.82851 -13.49630 -13.38073 -13.11379 -12.90944 -12.57270 -12.19594 -12.08492 -11.75048 -11.48216 -11.27025 -10.86579 -10.51745 -10.11125 -9.29980 -8.43046 -8.12859 -5.86518 1.09444 1.47196 1.50294 1.61852 1.81501 2.06839 2.49566 3.03176 3.25606 3.42250 3.85405 4.03813 4.26051 4.31017 4.37320 4.38756 4.49023 4.51139 4.68799 4.89580 4.93252 4.97695 4.99335 5.01786 5.32698 5.43995 5.55897 5.94142 5.98958 6.26489 6.33232 6.94047 7.08097 7.55973 8.07568 8.96455 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033330 B = 0.011064 C = 0.009674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.881576 B = 2530.056595 C = 2893.744266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.375 5.375 3 N -0.349 5.349 4 C 0.039 3.961 5 C -0.284 4.284 6 C 0.079 3.921 7 C 0.200 3.800 8 N -0.574 5.574 9 C -0.277 4.277 10 H 0.033 0.967 11 C 0.016 3.984 12 N -0.944 5.944 13 Si 0.941 3.059 14 H -0.254 1.254 15 H -0.318 1.318 16 H -0.254 1.254 17 C 0.106 3.894 18 C -0.210 4.210 19 C -0.193 4.193 20 H 0.051 0.949 21 H 0.096 0.904 22 H 0.093 0.907 23 H 0.209 0.791 24 H 0.162 0.838 25 H 0.099 0.901 26 H 0.065 0.935 27 H 0.264 0.736 28 H 0.127 0.873 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.764 0.633 -6.803 11.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.158 5.158 3 N -0.172 5.172 4 C -0.146 4.146 5 C -0.314 4.314 6 C -0.052 4.052 7 C 0.073 3.927 8 N -0.293 5.293 9 C -0.406 4.406 10 H 0.051 0.949 11 C -0.183 4.183 12 N -0.585 5.585 13 Si 0.767 3.233 14 H -0.179 1.179 15 H -0.247 1.247 16 H -0.178 1.178 17 C 0.000 4.000 18 C -0.248 4.248 19 C -0.234 4.234 20 H 0.070 0.930 21 H 0.115 0.885 22 H 0.112 0.888 23 H 0.226 0.774 24 H 0.180 0.820 25 H 0.117 0.883 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.145 0.855 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.659 1.570 -6.736 11.082 hybrid contribution -0.041 -1.128 0.542 1.252 sum 8.617 0.442 -6.194 10.622 Atomic orbital electron populations 1.21785 0.74167 1.04475 1.02552 1.48578 1.06956 1.03616 1.56621 1.77163 1.02963 1.09675 1.27355 1.24284 0.95286 0.95779 0.99211 1.21453 0.96451 0.95069 1.18412 1.22613 0.91781 0.92434 0.98339 1.19750 1.00478 0.86306 0.86120 1.43609 1.06150 1.70534 1.09036 1.18363 0.92581 0.92619 1.37062 0.94925 1.26407 0.94317 1.02279 0.95296 1.69990 1.23370 1.32186 1.32920 0.85879 0.76785 0.79973 0.80621 1.17859 1.24707 1.17807 1.21654 0.93130 0.98934 0.86312 1.23422 1.01134 0.98135 1.02063 1.23205 0.98792 0.94385 1.06990 0.92993 0.88528 0.88832 0.77404 0.82014 0.88310 0.91663 0.92725 0.85542 0.90314 0.88205 0.87360 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.88 10.71 127.77 1.37 5.25 16 2 N -0.38 -14.28 4.01 -356.04 -1.43 -15.71 16 3 N -0.35 -13.06 12.58 -57.02 -0.72 -13.77 16 4 C 0.04 1.22 12.03 85.24 1.03 2.25 16 5 C -0.28 -9.01 10.72 21.99 0.24 -8.77 16 6 C 0.08 2.86 6.51 41.40 0.27 3.13 16 7 C 0.20 7.19 5.88 85.63 0.50 7.69 16 8 N -0.57 -24.62 2.03 -682.33 -1.38 -26.00 16 9 C -0.28 -14.44 9.16 84.03 0.77 -13.67 16 10 H 0.03 1.94 6.30 -2.92 -0.02 1.93 16 11 C 0.02 0.86 3.73 84.86 0.32 1.18 16 12 N -0.94 -55.82 13.97 21.65 0.30 -55.52 16 13 Si 0.94 42.77 24.92 68.60 1.71 44.48 16 14 H -0.25 -10.80 5.83 99.48 0.58 -10.22 16 15 H -0.32 -15.10 7.11 99.48 0.71 -14.40 16 16 H -0.25 -10.82 7.11 99.48 0.71 -10.12 16 17 C 0.11 4.08 5.16 44.99 0.23 4.31 16 18 C -0.21 -8.59 6.72 30.62 0.21 -8.38 16 19 C -0.19 -7.35 10.36 30.62 0.32 -7.03 16 20 H 0.05 2.07 7.04 -2.39 -0.02 2.05 16 21 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 22 H 0.09 3.09 7.14 -2.38 -0.02 3.07 16 23 H 0.21 4.65 8.06 -2.91 -0.02 4.62 16 24 H 0.16 4.20 8.06 -2.91 -0.02 4.17 16 25 H 0.10 2.91 8.07 -2.39 -0.02 2.89 16 26 H 0.07 2.36 7.13 -2.39 -0.02 2.35 16 27 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 28 H 0.13 3.97 8.14 -2.38 -0.02 3.95 16 29 H 0.08 3.94 5.11 -2.39 -0.01 3.93 16 30 H 0.10 3.56 7.88 -2.38 -0.02 3.54 16 31 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 Total: -1.00 -64.97 264.21 4.71 -60.26 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.98 Total: 20.32 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 5.24 Total: -14.05 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -3.23 Total: -111.01 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.71 Total: 44.48 kcal Total: -64.97 4.71 -60.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611265085.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.960 kcal (2) G-P(sol) polarization free energy of solvation -64.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds