Wall clock time and date at job start Thu Apr 9 2020 11:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38620 * 120.44714 * 2 1 4 4 C 1.38570 * 118.40098 * 180.02562 * 3 2 1 5 5 N 1.32354 * 119.10587 * 359.97438 * 4 3 2 6 6 C 1.31788 * 120.81717 * 0.02562 * 5 4 3 7 7 C 1.50689 * 119.12295 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47632 * 89.99510 * 7 6 5 9 9 C 1.46897 * 110.99764 * 66.04536 * 8 7 6 10 10 C 1.46900 * 111.00239 * 190.00180 * 8 7 6 11 11 C 1.50697 * 109.47046 * 170.00142 * 10 8 7 12 12 H 1.08000 * 120.00368 * 359.97438 * 11 10 8 13 13 C 1.37881 * 119.99970 * 179.97438 * 11 10 8 14 14 N 1.31517 * 119.99606 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00193 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47036 * 60.00060 * 15 13 11 17 17 H 1.48497 * 109.47349 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47038 * 300.00046 * 15 13 11 19 19 N 1.31810 * 121.75378 * 359.70960 * 6 5 4 20 20 H 1.09001 * 109.46953 * 90.00117 * 1 2 3 21 21 H 1.09000 * 109.47318 * 209.99715 * 1 2 3 22 22 H 1.09000 * 109.47161 * 330.00345 * 1 2 3 23 23 H 1.08007 * 120.80019 * 359.97438 * 3 2 1 24 24 H 1.07998 * 120.45342 * 179.97438 * 4 3 2 25 25 H 1.09001 * 109.47542 * 209.99895 * 7 6 5 26 26 H 1.09007 * 109.47401 * 329.99421 * 7 6 5 27 27 H 1.08997 * 109.47137 * 60.00564 * 9 8 7 28 28 H 1.09000 * 109.46759 * 179.97438 * 9 8 7 29 29 H 1.08992 * 109.47259 * 300.00070 * 9 8 7 30 30 H 1.09003 * 109.46639 * 290.00094 * 10 8 7 31 31 H 1.08999 * 109.47536 * 49.99884 * 10 8 7 32 32 H 0.97008 * 119.99532 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5943 1.1456 -0.0005 5 7 4.1964 -0.0331 -0.0005 6 6 3.4957 -1.1492 -0.0005 7 6 4.2205 -2.4703 -0.0011 8 7 4.4568 -2.8999 1.3837 9 6 3.1902 -3.1966 2.0661 10 6 5.3626 -4.0556 1.4291 11 6 5.7757 -4.3142 2.8551 12 1 5.4030 -3.6830 3.6483 13 6 6.6295 -5.3567 3.1472 14 7 7.0837 -6.1250 2.1813 15 14 7.1421 -5.6770 4.9147 16 1 5.9376 -5.9588 5.7361 17 1 8.0577 -6.8452 4.9607 18 1 7.8392 -4.4810 5.4524 19 7 2.1776 -1.1407 0.0052 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6900 2.1419 -0.0004 24 1 4.1746 2.0564 -0.0010 25 1 3.6149 -3.2169 -0.5148 26 1 5.1754 -2.3607 -0.5154 27 1 2.6704 -3.9949 1.5364 28 1 3.3942 -3.5127 3.0892 29 1 2.5665 -2.3029 2.0791 30 1 4.8515 -4.9335 1.0339 31 1 6.2469 -3.8481 0.8266 32 1 7.6841 -6.8587 2.3869 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694435561.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:54:17 Heat of formation + Delta-G solvation = 51.032923 kcal Electronic energy + Delta-G solvation = -14564.154580 eV Core-core repulsion = 12139.025514 eV Total energy + Delta-G solvation = -2425.129066 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.91051 -36.55239 -34.27892 -32.95481 -32.04663 -28.76299 -27.69883 -26.83658 -24.37898 -23.18932 -21.81201 -20.19437 -17.48799 -16.48549 -15.97448 -15.39485 -15.10326 -14.61347 -14.08325 -13.80345 -13.56533 -13.18570 -12.88024 -12.45794 -12.22088 -11.86871 -11.46569 -11.02663 -10.86974 -10.80737 -10.60343 -10.45628 -10.25989 -9.85416 -9.34734 -9.17117 -9.02563 -8.39787 -7.25198 -5.99246 -4.00210 1.03535 1.23759 3.36861 3.40320 3.43761 3.84164 4.07116 4.29700 4.47345 4.53041 5.00510 5.14287 5.20593 5.32292 5.37017 5.39183 5.53587 5.70854 5.81423 6.06776 6.13914 6.27942 6.44692 6.57584 6.82457 7.21316 7.29040 7.35553 7.81192 8.08360 8.19904 8.37177 8.54873 9.06286 9.63306 11.11714 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050126 B = 0.005809 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.463041 B = 4818.902620 C = 4901.739073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.169 3.831 3 C -0.245 4.245 4 C 0.148 3.852 5 N -0.506 5.506 6 C 0.349 3.651 7 C 0.117 3.883 8 N -0.532 5.532 9 C 0.041 3.959 10 C 0.195 3.805 11 C -0.506 4.506 12 H 0.062 0.938 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.899 3.101 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.276 1.276 19 N -0.516 5.516 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.141 0.859 24 H 0.165 0.835 25 H 0.052 0.948 26 H 0.095 0.905 27 H 0.016 0.984 28 H 0.073 0.927 29 H 0.043 0.957 30 H -0.005 1.005 31 H 0.033 0.967 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.360 12.947 -5.182 17.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.022 3.978 3 C -0.267 4.267 4 C -0.018 4.018 5 N -0.220 5.220 6 C 0.082 3.918 7 C -0.013 4.013 8 N -0.257 5.257 9 C -0.108 4.108 10 C 0.070 3.930 11 C -0.545 4.545 12 H 0.080 0.920 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.727 3.273 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 N -0.232 5.232 20 H 0.100 0.900 21 H 0.100 0.900 22 H 0.096 0.904 23 H 0.159 0.841 24 H 0.182 0.818 25 H 0.069 0.931 26 H 0.113 0.887 27 H 0.034 0.966 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.012 0.988 31 H 0.051 0.949 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.520 12.286 -4.961 16.918 hybrid contribution -0.483 0.057 0.519 0.711 sum -11.002 12.343 -4.442 17.121 Atomic orbital electron populations 1.20752 0.88229 1.03865 1.03327 1.21728 0.97450 0.88474 0.90104 1.22655 0.96750 1.00154 1.07126 1.23245 0.92026 0.96420 0.90115 1.68330 1.41643 0.98590 1.13449 1.23366 0.85935 0.94835 0.87708 1.20821 0.98651 0.88213 0.93611 1.62109 1.13225 1.39819 1.10579 1.22215 0.90416 0.98064 1.00108 1.19765 0.90493 0.84626 0.98103 1.21094 1.27697 1.13062 0.92642 0.91954 1.24974 0.96141 0.95960 0.97474 1.69954 1.33479 1.18647 1.31764 0.86539 0.78406 0.77613 0.84718 1.20319 1.21335 1.20172 1.68206 1.10109 1.30169 1.14695 0.89999 0.89969 0.90417 0.84092 0.81819 0.93053 0.88695 0.96569 0.90850 0.93833 0.98766 0.94859 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.94 10.22 36.01 0.37 -0.57 16 2 C 0.17 2.23 6.82 -82.24 -0.56 1.67 16 3 C -0.24 -2.79 9.86 -39.32 -0.39 -3.18 16 4 C 0.15 1.94 11.30 -17.20 -0.19 1.75 16 5 N -0.51 -8.86 10.34 -10.73 -0.11 -8.97 16 6 C 0.35 6.43 6.42 -157.19 -1.01 5.42 16 7 C 0.12 2.35 5.40 -4.98 -0.03 2.32 16 8 N -0.53 -12.39 4.74 -245.84 -1.17 -13.55 16 9 C 0.04 0.87 9.10 60.06 0.55 1.42 16 10 C 0.19 5.24 4.72 -4.98 -0.02 5.21 16 11 C -0.51 -14.61 8.46 -34.44 -0.29 -14.90 16 12 H 0.06 1.79 7.12 -52.49 -0.37 1.42 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 15 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 N -0.52 -8.68 9.17 -6.99 -0.06 -8.75 16 20 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 23 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 24 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 25 H 0.05 1.00 8.12 -51.93 -0.42 0.58 16 26 H 0.09 1.88 7.93 -51.93 -0.41 1.47 16 27 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 1.65 6.76 -51.93 -0.35 1.30 16 29 H 0.04 0.87 6.54 -51.93 -0.34 0.53 16 30 H -0.01 -0.15 8.12 -51.93 -0.42 -0.58 16 31 H 0.03 0.94 7.93 -51.93 -0.41 0.53 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 275.63 15.07 4.15 4.15 Total: -1.00 -32.62 275.63 -7.55 -40.17 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: -4.40 Total: -4.42 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -1.68 Total: 0.67 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -0.60 Total: -57.57 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.62 -7.55 -40.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694435561.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.199 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds