Wall clock time and date at job start Thu Apr 9 2020 11:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38620 * 120.44714 * 2 1 4 4 C 1.38570 * 118.40098 * 180.02562 * 3 2 1 5 5 N 1.32354 * 119.10587 * 359.97438 * 4 3 2 6 6 C 1.31788 * 120.81717 * 0.02562 * 5 4 3 7 7 C 1.50689 * 119.12295 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47632 * 89.99510 * 7 6 5 9 9 C 1.46897 * 110.99764 * 66.04536 * 8 7 6 10 10 C 1.46900 * 111.00239 * 190.00180 * 8 7 6 11 11 C 1.50697 * 109.47046 * 170.00142 * 10 8 7 12 12 H 1.08000 * 120.00368 * 359.97438 * 11 10 8 13 13 C 1.37881 * 119.99970 * 179.97438 * 11 10 8 14 14 N 1.31517 * 119.99606 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00193 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47036 * 60.00060 * 15 13 11 17 17 H 1.48497 * 109.47349 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47038 * 300.00046 * 15 13 11 19 19 N 1.31810 * 121.75378 * 359.70960 * 6 5 4 20 20 H 1.09001 * 109.46953 * 90.00117 * 1 2 3 21 21 H 1.09000 * 109.47318 * 209.99715 * 1 2 3 22 22 H 1.09000 * 109.47161 * 330.00345 * 1 2 3 23 23 H 1.08007 * 120.80019 * 359.97438 * 3 2 1 24 24 H 1.07998 * 120.45342 * 179.97438 * 4 3 2 25 25 H 1.09001 * 109.47542 * 209.99895 * 7 6 5 26 26 H 1.09007 * 109.47401 * 329.99421 * 7 6 5 27 27 H 1.08997 * 109.47137 * 60.00564 * 9 8 7 28 28 H 1.09000 * 109.46759 * 179.97438 * 9 8 7 29 29 H 1.08992 * 109.47259 * 300.00070 * 9 8 7 30 30 H 1.09003 * 109.46639 * 290.00094 * 10 8 7 31 31 H 1.08999 * 109.47536 * 49.99884 * 10 8 7 32 32 H 0.97008 * 119.99532 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5943 1.1456 -0.0005 5 7 4.1964 -0.0331 -0.0005 6 6 3.4957 -1.1492 -0.0005 7 6 4.2205 -2.4703 -0.0011 8 7 4.4568 -2.8999 1.3837 9 6 3.1902 -3.1966 2.0661 10 6 5.3626 -4.0556 1.4291 11 6 5.7757 -4.3142 2.8551 12 1 5.4030 -3.6830 3.6483 13 6 6.6295 -5.3567 3.1472 14 7 7.0837 -6.1250 2.1813 15 14 7.1421 -5.6770 4.9147 16 1 5.9376 -5.9588 5.7361 17 1 8.0577 -6.8452 4.9607 18 1 7.8392 -4.4810 5.4524 19 7 2.1776 -1.1407 0.0052 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6900 2.1419 -0.0004 24 1 4.1746 2.0564 -0.0010 25 1 3.6149 -3.2169 -0.5148 26 1 5.1754 -2.3607 -0.5154 27 1 2.6704 -3.9949 1.5364 28 1 3.3942 -3.5127 3.0892 29 1 2.5665 -2.3029 2.0791 30 1 4.8515 -4.9335 1.0339 31 1 6.2469 -3.8481 0.8266 32 1 7.6841 -6.8587 2.3869 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694435561.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:54:17 Heat of formation + Delta-G solvation = 27.763202 kcal Electronic energy + Delta-G solvation = -14565.163631 eV Core-core repulsion = 12139.025514 eV Total energy + Delta-G solvation = -2426.138117 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.04184 -38.33693 -35.36567 -34.83426 -33.53491 -29.94896 -29.31419 -28.54378 -26.21438 -24.30857 -23.32083 -21.92270 -18.70585 -18.49467 -17.20863 -16.92088 -16.46797 -16.14406 -15.82426 -15.31889 -15.06523 -14.23041 -14.00369 -13.84202 -13.62376 -13.38926 -13.12325 -12.91425 -12.66366 -12.60619 -12.41924 -12.00956 -11.68620 -11.48931 -11.32731 -10.62235 -10.33940 -10.16743 -9.14368 -8.20859 -6.31293 -0.07037 0.20705 1.41241 1.45115 1.53054 2.39546 2.65589 2.91945 3.11547 3.21796 3.48678 3.66244 4.07506 4.22842 4.31372 4.37365 4.50284 4.60340 4.66088 4.68517 4.76555 4.92422 5.02078 5.12438 5.13010 5.22012 5.54551 5.61658 5.99132 6.15292 6.23208 6.49485 6.82081 7.21101 7.37679 8.90338 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050126 B = 0.005809 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.463041 B = 4818.902620 C = 4901.739073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.153 3.847 3 C -0.220 4.220 4 C 0.135 3.865 5 N -0.541 5.541 6 C 0.325 3.675 7 C 0.121 3.879 8 N -0.541 5.541 9 C 0.053 3.947 10 C 0.210 3.790 11 C -0.527 4.527 12 H 0.060 0.940 13 C 0.004 3.996 14 N -0.933 5.933 15 Si 0.972 3.028 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.270 1.270 19 N -0.539 5.539 20 H 0.098 0.902 21 H 0.071 0.929 22 H 0.109 0.891 23 H 0.190 0.810 24 H 0.201 0.799 25 H 0.050 0.950 26 H 0.086 0.914 27 H 0.015 0.985 28 H 0.059 0.941 29 H 0.059 0.941 30 H -0.030 1.030 31 H 0.009 0.991 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.774 15.111 -4.327 20.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.007 3.993 3 C -0.241 4.241 4 C -0.029 4.029 5 N -0.256 5.256 6 C 0.057 3.943 7 C -0.009 4.009 8 N -0.266 5.266 9 C -0.095 4.095 10 C 0.084 3.916 11 C -0.565 4.565 12 H 0.078 0.922 13 C -0.194 4.194 14 N -0.573 5.573 15 Si 0.796 3.204 16 H -0.192 1.192 17 H -0.205 1.205 18 H -0.195 1.195 19 N -0.256 5.256 20 H 0.117 0.883 21 H 0.090 0.910 22 H 0.128 0.872 23 H 0.208 0.792 24 H 0.218 0.782 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.034 0.966 28 H 0.078 0.922 29 H 0.078 0.922 30 H -0.012 1.012 31 H 0.027 0.973 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.962 14.483 -4.116 19.230 hybrid contribution -0.132 -0.481 0.167 0.526 sum -12.094 14.002 -3.949 18.919 Atomic orbital electron populations 1.20881 0.85191 1.04956 1.04690 1.22534 0.99408 0.88130 0.89244 1.23161 0.96027 1.01491 1.03472 1.23944 0.93567 0.96036 0.89332 1.68229 1.42892 0.99756 1.14722 1.22724 0.86705 0.94138 0.90759 1.20683 0.98722 0.89945 0.91519 1.61985 1.13758 1.37837 1.13034 1.22083 0.89775 0.98702 0.98963 1.19418 0.90168 0.85050 0.96952 1.21369 1.28311 1.13546 0.93289 0.92176 1.25910 0.95823 0.95439 1.02265 1.70080 1.33907 1.19106 1.34173 0.85397 0.78334 0.77727 0.78909 1.19200 1.20505 1.19465 1.68133 1.09392 1.32471 1.15600 0.88334 0.90976 0.87214 0.79230 0.78247 0.93195 0.89600 0.96598 0.92207 0.92248 1.01248 0.97269 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 10.22 71.24 0.73 -0.72 16 2 C 0.15 3.61 6.82 42.58 0.29 3.90 16 3 C -0.22 -4.14 9.86 22.44 0.22 -3.92 16 4 C 0.14 3.21 11.30 84.69 0.96 4.16 16 5 N -0.54 -18.71 10.34 -187.86 -1.94 -20.65 16 6 C 0.32 12.07 6.42 138.74 0.89 12.96 16 7 C 0.12 5.09 5.40 85.55 0.46 5.55 16 8 N -0.54 -26.14 4.74 -931.69 -4.42 -30.56 16 9 C 0.05 2.34 9.10 127.69 1.16 3.50 16 10 C 0.21 11.84 4.72 85.56 0.40 12.25 16 11 C -0.53 -31.15 8.46 25.60 0.22 -30.93 16 12 H 0.06 3.51 7.12 -2.91 -0.02 3.49 16 13 C 0.00 0.23 5.46 84.66 0.46 0.69 16 14 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 15 Si 0.97 45.30 29.54 68.60 2.03 47.32 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 19 N -0.54 -17.78 9.17 -176.01 -1.61 -19.39 16 20 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 21 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.11 0.90 8.10 -2.39 -0.02 0.88 16 23 H 0.19 1.67 8.06 -2.91 -0.02 1.64 16 24 H 0.20 3.03 8.06 -2.91 -0.02 3.01 16 25 H 0.05 2.05 8.12 -2.39 -0.02 2.03 16 26 H 0.09 3.64 7.93 -2.38 -0.02 3.62 16 27 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 2.75 6.76 -2.39 -0.02 2.73 16 29 H 0.06 2.40 6.54 -2.39 -0.02 2.38 16 30 H -0.03 -1.81 8.12 -2.39 -0.02 -1.83 16 31 H 0.01 0.55 7.93 -2.39 -0.02 0.53 16 32 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 Total: -1.00 -72.64 275.63 1.23 -71.41 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: 1.10 Total: 1.34 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 5.79 Total: 7.44 kcal Atomic # 7 Polarization: -119.83 SS G_CDS: -7.69 Total: -127.52 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -72.64 1.23 -71.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694435561.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.174 kcal (2) G-P(sol) polarization free energy of solvation -72.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds