Wall clock time and date at job start Thu Apr 9 2020 11:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33484 * 120.00477 * 2 1 4 4 C 1.46252 * 119.99982 * 180.02562 * 3 2 1 5 5 C 1.35362 * 119.99693 * 186.20383 * 4 3 2 6 6 C 1.41783 * 120.00131 * 9.56569 * 5 4 3 7 7 O 1.21782 * 119.99646 * 6.96378 * 6 5 4 8 8 N 1.34771 * 119.99791 * 186.97086 * 6 5 4 9 9 C 1.36689 * 119.99735 * 174.54338 * 8 6 5 10 10 H 1.08004 * 119.99973 * 23.41418 * 9 8 6 11 11 C 1.39136 * 119.99999 * 203.41562 * 9 8 6 12 12 N 1.31320 * 120.00045 * 2.78244 * 11 9 8 13 13 Si 1.86806 * 120.00108 * 182.78871 * 11 9 8 14 14 H 1.48501 * 109.47136 * 179.97438 * 13 11 9 15 15 H 1.48501 * 109.46626 * 299.99797 * 13 11 9 16 16 H 1.48498 * 109.47081 * 59.99584 * 13 11 9 17 17 C 1.46496 * 120.00272 * 354.53666 * 8 6 5 18 18 C 1.53002 * 117.50336 * 310.47198 * 17 8 6 19 19 C 1.52995 * 117.50408 * 241.80763 * 17 8 6 20 20 H 1.08998 * 109.47441 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47018 * 300.00178 * 1 2 3 22 22 H 1.08998 * 109.47314 * 59.99413 * 1 2 3 23 23 H 1.07998 * 119.99510 * 179.97438 * 2 1 3 24 24 H 1.08007 * 119.99490 * 0.02562 * 3 2 1 25 25 H 1.07993 * 120.00379 * 6.20441 * 4 3 2 26 26 H 1.07995 * 119.99881 * 189.55969 * 5 4 3 27 27 H 0.96999 * 119.99917 * 179.97438 * 12 11 9 28 28 H 1.09004 * 115.54643 * 96.14233 * 17 8 6 29 29 H 1.09004 * 117.49107 * 359.97438 * 18 17 8 30 30 H 1.08996 * 117.49720 * 145.01325 * 18 17 8 31 31 H 1.08992 * 117.50483 * 214.98027 * 19 17 8 32 32 H 1.08998 * 117.49742 * 359.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1745 1.1560 0.0000 4 6 3.6371 1.1558 -0.0006 5 6 4.3140 2.3212 0.1261 6 6 3.6200 3.5113 0.4613 7 8 2.4401 3.4648 0.7591 8 7 4.2662 4.6940 0.4500 9 6 3.5738 5.8530 0.6635 10 1 2.6360 5.8311 1.1988 11 6 4.0772 7.0611 0.1913 12 7 5.1894 7.0811 -0.5066 13 14 3.1710 8.6548 0.5502 14 1 3.9083 9.7912 -0.0582 15 1 1.8035 8.5867 -0.0247 16 1 3.0812 8.8531 2.0191 17 6 5.7105 4.7373 0.2092 18 6 6.5927 3.7965 1.0324 19 6 6.5960 5.2994 1.3231 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 2.0469 -0.9353 0.0004 24 1 1.6345 2.0913 0.0004 25 1 4.1770 0.2261 -0.1021 26 1 5.3826 2.3444 -0.0280 27 1 5.5401 7.9233 -0.8361 28 1 6.0097 4.9358 -0.8200 29 1 6.0982 3.1456 1.7535 30 1 7.4723 3.3763 0.5449 31 1 7.4779 5.8672 1.0269 32 1 6.1039 5.6373 2.2350 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706798140.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:54:28 Heat of formation + Delta-G solvation = 43.588771 kcal Electronic energy + Delta-G solvation = -14904.176586 eV Core-core repulsion = 12446.431965 eV Total energy + Delta-G solvation = -2457.744620 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.10214 -36.44052 -34.68834 -33.19268 -31.50926 -31.08568 -27.03201 -25.00935 -22.39838 -21.47525 -20.87485 -19.32615 -17.94206 -17.02751 -15.91285 -15.17348 -14.48144 -14.30199 -13.75578 -13.36692 -13.07756 -12.88038 -12.48373 -12.12545 -11.92146 -11.31115 -11.18077 -10.92587 -10.82080 -10.78138 -10.50277 -10.37012 -9.90619 -9.79550 -9.35061 -8.88936 -8.08510 -7.77873 -7.53100 -6.34471 -3.86978 1.48652 3.17177 3.21605 3.25647 3.43404 4.08861 4.50664 4.69616 4.84465 5.16432 5.38630 5.57073 5.67413 5.79194 5.95206 5.97302 5.99950 6.05861 6.16640 6.25310 6.39625 6.41536 6.70722 6.77851 6.91753 7.08529 7.27216 7.37111 7.49815 7.57919 8.12524 8.49859 9.18067 9.39347 10.01521 10.66567 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029913 B = 0.008617 C = 0.006954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.815024 B = 3248.443974 C = 4025.420795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.192 4.192 3 C -0.120 4.120 4 C -0.094 4.094 5 C -0.173 4.173 6 C 0.469 3.531 7 O -0.591 6.591 8 N -0.409 5.409 9 C -0.301 4.301 10 H 0.101 0.899 11 C 0.036 3.964 12 N -0.869 5.869 13 Si 0.928 3.072 14 H -0.283 1.283 15 H -0.272 1.272 16 H -0.273 1.273 17 C 0.136 3.864 18 C -0.227 4.227 19 C -0.150 4.150 20 H 0.051 0.949 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.096 0.904 24 H 0.162 0.838 25 H 0.110 0.890 26 H 0.125 0.875 27 H 0.269 0.731 28 H 0.118 0.882 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.500 -6.766 0.107 6.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.211 4.211 3 C -0.138 4.138 4 C -0.115 4.115 5 C -0.194 4.194 6 C 0.263 3.737 7 O -0.480 6.480 8 N -0.125 5.125 9 C -0.429 4.429 10 H 0.119 0.881 11 C -0.169 4.169 12 N -0.506 5.506 13 Si 0.754 3.246 14 H -0.209 1.209 15 H -0.197 1.197 16 H -0.199 1.199 17 C 0.031 3.969 18 C -0.265 4.265 19 C -0.188 4.188 20 H 0.070 0.930 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.114 0.886 24 H 0.179 0.821 25 H 0.128 0.872 26 H 0.143 0.857 27 H 0.080 0.920 28 H 0.135 0.865 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.087 -6.543 0.157 6.634 hybrid contribution 0.052 0.849 0.137 0.861 sum 1.139 -5.694 0.294 5.814 Atomic orbital electron populations 1.20715 0.93586 1.01026 1.01844 1.23390 0.95773 0.97216 1.04671 1.23131 0.93970 1.00503 0.96150 1.22270 0.94059 0.96409 0.98795 1.22626 1.00684 0.94000 1.02094 1.16843 0.87145 0.84041 0.85668 1.90442 1.16504 1.86088 1.54920 1.43197 1.04782 1.05676 1.58841 1.19652 1.05888 0.83560 1.33822 0.88091 1.25384 0.96345 0.99704 0.95481 1.69831 1.19763 1.27364 1.33660 0.85968 0.79479 0.80327 0.78787 1.20859 1.19722 1.19881 1.21277 0.79841 0.99355 0.96447 1.23639 1.02959 0.94400 1.05499 1.22794 1.01759 0.93171 1.01089 0.92980 0.91962 0.92119 0.88639 0.82147 0.87194 0.85735 0.92027 0.86487 0.89452 0.89200 0.89564 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 10.19 36.01 0.37 -1.23 16 2 C -0.19 -3.07 9.99 -35.97 -0.36 -3.43 16 3 C -0.12 -2.33 8.50 -38.03 -0.32 -2.65 16 4 C -0.09 -1.72 9.88 -37.39 -0.37 -2.09 16 5 C -0.17 -3.54 8.31 -39.25 -0.33 -3.86 16 6 C 0.47 11.74 7.15 -14.91 -0.11 11.64 16 7 O -0.59 -16.25 12.72 5.12 0.07 -16.19 16 8 N -0.41 -10.50 2.93 -110.90 -0.32 -10.83 16 9 C -0.30 -8.30 9.18 -15.05 -0.14 -8.43 16 10 H 0.10 2.91 7.35 -52.48 -0.39 2.53 16 11 C 0.04 0.92 5.26 -17.44 -0.09 0.83 16 12 N -0.87 -22.24 10.19 55.51 0.57 -21.68 16 13 Si 0.93 20.51 29.56 -169.99 -5.02 15.49 16 14 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 16 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 17 C 0.14 3.04 3.44 -67.93 -0.23 2.80 16 18 C -0.23 -4.11 7.87 -26.69 -0.21 -4.32 16 19 C -0.15 -3.06 9.43 -26.69 -0.25 -3.31 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 22 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 23 H 0.10 1.34 8.05 -52.49 -0.42 0.92 16 24 H 0.16 3.67 5.12 -52.96 -0.27 3.40 16 25 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 26 H 0.12 2.25 5.25 -52.49 -0.28 1.98 16 27 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 28 H 0.12 2.73 7.49 -51.93 -0.39 2.34 16 29 H 0.09 1.60 7.32 -51.93 -0.38 1.22 16 30 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 32 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 271.73 15.07 4.09 4.09 Total: -1.00 -28.79 271.73 -6.89 -35.68 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -4.22 Total: 7.49 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -2.04 Total: -14.06 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.24 Total: -32.51 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.07 Total: -16.19 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.79 -6.89 -35.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706798140.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.266 kcal (2) G-P(sol) polarization free energy of solvation -28.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds