Wall clock time and date at job start Thu Apr 9 2020 11:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35707 * 116.99720 * 2 1 4 4 C 1.39029 * 119.58579 * 180.02562 * 3 2 1 5 5 C 1.38220 * 119.20245 * 179.97438 * 4 3 2 6 6 C 1.39582 * 118.41508 * 0.02562 * 5 4 3 7 7 N 1.39600 * 120.43842 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00018 * 325.01341 * 7 6 5 9 9 O 1.21767 * 120.00241 * 4.66140 * 8 7 6 10 10 C 1.41810 * 119.99989 * 184.66591 * 8 7 6 11 11 H 1.07998 * 120.00305 * 5.03499 * 10 8 7 12 12 C 1.40138 * 120.00010 * 185.03797 * 10 8 7 13 13 N 1.30635 * 120.00169 * 354.95718 * 12 10 8 14 14 Si 1.86805 * 120.00081 * 174.96353 * 12 10 8 15 15 H 1.48495 * 109.47155 * 94.99744 * 14 12 10 16 16 H 1.48502 * 109.46896 * 214.99884 * 14 12 10 17 17 H 1.48497 * 109.46816 * 334.99436 * 14 12 10 18 18 C 1.38923 * 119.11945 * 359.97438 * 6 5 4 19 19 N 1.31879 * 120.70646 * 0.02562 * 18 6 5 20 20 H 1.08999 * 109.47251 * 60.00158 * 1 2 3 21 21 H 1.08998 * 109.47436 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47041 * 300.00068 * 1 2 3 23 23 H 1.08004 * 120.39824 * 0.27559 * 4 3 2 24 24 H 1.08008 * 120.79092 * 180.02562 * 5 4 3 25 25 H 0.96998 * 120.00318 * 145.01392 * 7 6 5 26 26 H 0.96997 * 120.00122 * 179.97438 * 13 12 10 27 27 H 1.07993 * 119.64253 * 179.97438 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 3.4339 1.2720 -0.0005 5 6 4.0531 2.5077 -0.0011 6 6 3.2530 3.6515 -0.0005 7 7 3.8339 4.9209 -0.0005 8 6 4.9842 5.1356 0.6683 9 8 5.5613 4.2053 1.2014 10 6 5.5223 6.4450 0.7514 11 1 4.9706 7.2821 0.3497 12 6 6.7699 6.6529 1.3548 13 7 7.3923 5.6575 1.9279 14 14 7.5430 8.3534 1.3398 15 1 7.2110 9.0592 2.6033 16 1 9.0174 8.2257 1.2167 17 1 7.0153 9.1268 0.1872 18 6 1.8710 3.5099 0.0000 19 7 1.3167 2.3132 0.0005 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 4.0219 0.3661 -0.0054 24 1 5.1303 2.5864 -0.0019 25 1 3.4098 5.6484 -0.4818 26 1 8.2560 5.8013 2.3451 27 1 1.2440 4.3891 0.0009 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019511814.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:54:29 Heat of formation + Delta-G solvation = -37.872467 kcal Electronic energy + Delta-G solvation = -14405.658640 eV Core-core repulsion = 11743.122590 eV Total energy + Delta-G solvation = -2662.536050 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.13431 -38.27847 -36.79586 -33.59386 -32.46946 -31.66561 -29.10146 -27.11055 -26.19019 -22.96970 -22.46308 -20.03808 -18.05420 -17.68575 -16.28391 -16.10892 -15.64092 -15.47579 -14.21160 -13.99291 -13.85446 -13.29112 -12.97319 -12.63040 -12.24755 -12.07161 -11.60743 -11.36296 -11.19569 -10.87780 -10.68415 -10.39106 -9.68183 -9.23978 -9.04763 -8.74452 -7.77032 -7.03088 -6.43561 -4.95759 1.69234 1.94767 3.01719 3.09922 3.13636 3.50787 3.93842 4.21573 4.43968 4.58744 4.84230 5.40017 5.48017 5.50463 5.53343 5.70275 5.76584 5.87940 6.16300 6.39467 6.80297 7.00265 7.19335 7.60426 7.77490 7.95386 8.06770 8.36314 8.75104 9.21122 10.31868 10.51367 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.084864 B = 0.005904 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.859307 B = 4741.240835 C = 4988.206887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.317 6.317 3 C 0.265 3.735 4 C -0.166 4.166 5 C -0.056 4.056 6 C 0.115 3.885 7 N -0.696 5.696 8 C 0.544 3.456 9 O -0.570 6.570 10 C -0.538 4.538 11 H 0.071 0.929 12 C 0.088 3.912 13 N -0.747 5.747 14 Si 0.913 3.087 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.262 1.262 18 C 0.073 3.927 19 N -0.523 5.523 20 H 0.053 0.947 21 H 0.087 0.913 22 H 0.053 0.947 23 H 0.134 0.866 24 H 0.160 0.840 25 H 0.394 0.606 26 H 0.273 0.727 27 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.038 -3.417 -4.233 9.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.225 6.225 3 C 0.085 3.915 4 C -0.187 4.187 5 C -0.084 4.084 6 C 0.014 3.986 7 N -0.341 5.341 8 C 0.353 3.647 9 O -0.453 6.453 10 C -0.573 4.573 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.374 5.374 14 Si 0.737 3.263 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.186 1.186 18 C -0.085 4.085 19 N -0.246 5.246 20 H 0.071 0.929 21 H 0.106 0.894 22 H 0.072 0.928 23 H 0.152 0.848 24 H 0.177 0.823 25 H 0.227 0.773 26 H 0.084 0.916 27 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.190 -4.403 -3.708 10.010 hybrid contribution 0.740 1.434 -0.146 1.620 sum -7.450 -2.968 -3.854 8.898 Atomic orbital electron populations 1.22688 0.78457 1.01959 1.01992 1.86178 1.21898 1.25146 1.89255 1.19640 0.89323 0.84275 0.98239 1.20986 0.91458 0.99196 1.07101 1.21824 1.02313 0.89564 0.94705 1.18851 0.92264 0.88173 0.99352 1.44045 1.27916 1.07354 1.54740 1.17101 0.78224 0.90876 0.78496 1.90628 1.59470 1.45050 1.50186 1.20041 1.04442 0.92958 1.39835 0.91036 1.25772 0.96641 0.98298 0.92828 1.70007 1.12492 1.31712 1.23196 0.86258 0.78556 0.82006 0.79461 1.19578 1.20157 1.18600 1.22105 0.91325 0.93647 1.01435 1.67044 1.40473 0.98442 1.18616 0.92874 0.89441 0.92821 0.84790 0.82286 0.77264 0.91580 0.83056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.38 101.05 1.05 1.61 15 2 O -0.32 -5.19 10.48 -18.83 -0.20 -5.39 15 3 C 0.27 4.88 7.49 -17.07 -0.13 4.75 15 4 C -0.17 -3.10 10.03 -39.29 -0.39 -3.50 15 5 C -0.06 -1.18 8.80 -39.09 -0.34 -1.52 15 6 C 0.11 2.37 6.32 -83.57 -0.53 1.84 15 7 N -0.70 -15.10 5.32 -12.30 -0.07 -15.17 15 8 C 0.54 14.63 7.42 -14.89 -0.11 14.52 15 9 O -0.57 -17.24 12.36 5.13 0.06 -17.18 15 10 C -0.54 -14.22 9.31 -37.50 -0.35 -14.57 15 11 H 0.07 1.71 7.85 -52.49 -0.41 1.30 15 12 C 0.09 2.30 5.49 -17.35 -0.10 2.21 15 13 N -0.75 -21.08 11.75 55.56 0.65 -20.42 15 14 Si 0.91 18.90 29.56 -169.99 -5.03 13.88 15 15 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 16 H -0.28 -5.62 7.11 56.52 0.40 -5.22 15 17 H -0.26 -5.24 7.11 56.52 0.40 -4.84 15 18 C 0.07 1.33 11.12 -17.28 -0.19 1.14 15 19 N -0.52 -9.57 9.20 -13.09 -0.12 -9.69 15 20 H 0.05 0.65 8.10 -51.93 -0.42 0.23 15 21 H 0.09 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.05 0.68 8.10 -51.93 -0.42 0.26 15 23 H 0.13 2.19 8.06 -52.48 -0.42 1.76 15 24 H 0.16 3.72 6.31 -52.48 -0.33 3.38 15 25 H 0.39 7.18 8.78 -40.82 -0.36 6.83 15 26 H 0.27 6.95 8.29 -40.82 -0.34 6.62 15 27 H 0.15 2.29 8.06 -52.49 -0.42 1.87 15 LS Contribution 248.06 15.07 3.74 3.74 Total: -1.00 -31.91 248.06 -4.39 -36.30 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -2.35 Total: 7.47 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -1.09 Total: 6.47 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.47 Total: -45.28 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.13 Total: -22.57 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.91 -4.39 -36.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019511814.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.569 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds