Wall clock time and date at job start Thu Apr 9 2020 11:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35707 * 116.99720 * 2 1 4 4 C 1.39029 * 119.58579 * 180.02562 * 3 2 1 5 5 C 1.38220 * 119.20245 * 179.97438 * 4 3 2 6 6 C 1.39582 * 118.41508 * 0.02562 * 5 4 3 7 7 N 1.39600 * 120.43842 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00018 * 325.01341 * 7 6 5 9 9 O 1.21767 * 120.00241 * 4.66140 * 8 7 6 10 10 C 1.41810 * 119.99989 * 184.66591 * 8 7 6 11 11 H 1.07998 * 120.00305 * 5.03499 * 10 8 7 12 12 C 1.40138 * 120.00010 * 185.03797 * 10 8 7 13 13 N 1.30635 * 120.00169 * 354.95718 * 12 10 8 14 14 Si 1.86805 * 120.00081 * 174.96353 * 12 10 8 15 15 H 1.48495 * 109.47155 * 94.99744 * 14 12 10 16 16 H 1.48502 * 109.46896 * 214.99884 * 14 12 10 17 17 H 1.48497 * 109.46816 * 334.99436 * 14 12 10 18 18 C 1.38923 * 119.11945 * 359.97438 * 6 5 4 19 19 N 1.31879 * 120.70646 * 0.02562 * 18 6 5 20 20 H 1.08999 * 109.47251 * 60.00158 * 1 2 3 21 21 H 1.08998 * 109.47436 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47041 * 300.00068 * 1 2 3 23 23 H 1.08004 * 120.39824 * 0.27559 * 4 3 2 24 24 H 1.08008 * 120.79092 * 180.02562 * 5 4 3 25 25 H 0.96998 * 120.00318 * 145.01392 * 7 6 5 26 26 H 0.96997 * 120.00122 * 179.97438 * 13 12 10 27 27 H 1.07993 * 119.64253 * 179.97438 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 3.4339 1.2720 -0.0005 5 6 4.0531 2.5077 -0.0011 6 6 3.2530 3.6515 -0.0005 7 7 3.8339 4.9209 -0.0005 8 6 4.9842 5.1356 0.6683 9 8 5.5613 4.2053 1.2014 10 6 5.5223 6.4450 0.7514 11 1 4.9706 7.2821 0.3497 12 6 6.7699 6.6529 1.3548 13 7 7.3923 5.6575 1.9279 14 14 7.5430 8.3534 1.3398 15 1 7.2110 9.0592 2.6033 16 1 9.0174 8.2257 1.2167 17 1 7.0153 9.1268 0.1872 18 6 1.8710 3.5099 0.0000 19 7 1.3167 2.3132 0.0005 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 4.0219 0.3661 -0.0054 24 1 5.1303 2.5864 -0.0019 25 1 3.4098 5.6484 -0.4818 26 1 8.2560 5.8013 2.3451 27 1 1.2440 4.3891 0.0009 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019511814.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:54:29 Heat of formation + Delta-G solvation = -62.812760 kcal Electronic energy + Delta-G solvation = -14406.740132 eV Core-core repulsion = 11743.122590 eV Total energy + Delta-G solvation = -2663.617542 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.63738 -39.94846 -38.39318 -35.40241 -34.47460 -33.19376 -30.71510 -28.64505 -27.73642 -24.46334 -24.08329 -21.87107 -19.70243 -19.24185 -17.88853 -17.81770 -17.35020 -16.87462 -15.91401 -15.48780 -15.20458 -14.93783 -14.73754 -14.19729 -13.96477 -13.63656 -13.16718 -12.83174 -12.70230 -12.64300 -12.17728 -12.01789 -11.29347 -10.94551 -10.76478 -10.41428 -9.79234 -8.67301 -8.38908 -7.00756 0.19208 0.36799 1.40588 1.42011 1.58691 2.18775 2.24473 2.35987 2.81826 2.95297 3.44296 3.61417 4.02455 4.15144 4.26892 4.50076 4.55523 4.70815 4.76208 4.92903 5.22442 5.28191 5.39638 5.88422 6.13590 6.14261 6.39693 6.74660 6.85967 7.38422 8.37308 8.55892 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.084864 B = 0.005904 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.859307 B = 4741.240835 C = 4988.206887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.321 6.321 3 C 0.270 3.730 4 C -0.169 4.169 5 C -0.073 4.073 6 C 0.086 3.914 7 N -0.686 5.686 8 C 0.530 3.470 9 O -0.615 6.615 10 C -0.563 4.563 11 H 0.094 0.906 12 C 0.032 3.968 13 N -0.801 5.801 14 Si 1.000 3.000 15 H -0.263 1.263 16 H -0.273 1.273 17 H -0.246 1.246 18 C 0.094 3.906 19 N -0.522 5.522 20 H 0.057 0.943 21 H 0.124 0.876 22 H 0.052 0.948 23 H 0.152 0.848 24 H 0.127 0.873 25 H 0.410 0.590 26 H 0.279 0.721 27 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.570 -2.551 -4.754 10.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.229 6.229 3 C 0.090 3.910 4 C -0.190 4.190 5 C -0.101 4.101 6 C -0.014 4.014 7 N -0.332 5.332 8 C 0.339 3.661 9 O -0.503 6.503 10 C -0.598 4.598 11 H 0.112 0.888 12 C -0.186 4.186 13 N -0.429 5.429 14 Si 0.819 3.181 15 H -0.187 1.187 16 H -0.197 1.197 17 H -0.169 1.169 18 C -0.065 4.065 19 N -0.245 5.245 20 H 0.075 0.925 21 H 0.142 0.858 22 H 0.071 0.929 23 H 0.170 0.830 24 H 0.145 0.855 25 H 0.246 0.754 26 H 0.089 0.911 27 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -9.791 -3.562 -4.263 11.257 hybrid contribution 1.063 1.004 -0.010 1.462 sum -8.728 -2.558 -4.274 10.049 Atomic orbital electron populations 1.23030 0.76080 1.04520 1.02092 1.86185 1.24200 1.23849 1.88686 1.19792 0.89338 0.85073 0.96769 1.21084 0.92216 0.98922 1.06812 1.21631 1.01063 0.91208 0.96220 1.19030 0.93427 0.87394 1.01532 1.43541 1.26823 1.08467 1.54373 1.17451 0.79234 0.90865 0.78527 1.90595 1.61253 1.46259 1.52162 1.20582 1.05375 0.93549 1.40256 0.88821 1.27019 0.96910 1.03132 0.91562 1.70158 1.13304 1.34877 1.24539 0.84957 0.77306 0.75685 0.80117 1.18729 1.19745 1.16899 1.22522 0.90374 0.94749 0.98854 1.67192 1.40145 0.98419 1.18725 0.92462 0.85795 0.92947 0.83004 0.85500 0.75351 0.91081 0.79655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 10.38 113.37 1.18 2.00 15 2 O -0.32 -9.81 10.48 -90.28 -0.95 -10.75 15 3 C 0.27 9.52 7.49 84.82 0.64 10.15 15 4 C -0.17 -6.31 10.03 22.46 0.23 -6.08 15 5 C -0.07 -3.17 8.80 22.59 0.20 -2.97 15 6 C 0.09 3.56 6.32 38.39 0.24 3.80 15 7 N -0.69 -29.95 5.32 -311.01 -1.66 -31.61 15 8 C 0.53 29.25 7.42 85.12 0.63 29.89 15 9 O -0.62 -38.99 12.36 -4.56 -0.06 -39.04 15 10 C -0.56 -29.94 9.31 23.62 0.22 -29.72 15 11 H 0.09 4.38 7.85 -2.91 -0.02 4.36 15 12 C 0.03 1.69 5.49 85.33 0.47 2.16 15 13 N -0.80 -46.51 11.75 21.85 0.26 -46.25 15 14 Si 1.00 38.39 29.56 68.60 2.03 40.42 15 15 H -0.26 -9.67 7.11 99.48 0.71 -8.97 15 16 H -0.27 -10.18 7.11 99.48 0.71 -9.47 15 17 H -0.25 -8.71 7.11 99.48 0.71 -8.00 15 18 C 0.09 3.23 11.12 84.85 0.94 4.17 15 19 N -0.52 -17.99 9.20 -308.18 -2.83 -20.82 15 20 H 0.06 1.23 8.10 -2.39 -0.02 1.21 15 21 H 0.12 1.83 8.14 -2.39 -0.02 1.81 15 22 H 0.05 1.18 8.10 -2.39 -0.02 1.16 15 23 H 0.15 4.94 8.06 -2.91 -0.02 4.91 15 24 H 0.13 6.35 6.31 -2.91 -0.02 6.34 15 25 H 0.41 14.66 8.78 -92.71 -0.81 13.84 15 26 H 0.28 14.61 8.29 -92.71 -0.77 13.84 15 27 H 0.19 5.02 8.06 -2.91 -0.02 5.00 15 Total: -1.00 -70.57 248.06 1.93 -68.64 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.39 Total: 26.02 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 4.74 Total: 13.39 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -4.23 Total: -98.68 kcal Atomic # 8 Polarization: -48.79 SS G_CDS: -1.00 Total: -49.79 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -70.57 1.93 -68.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019511814.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.832 kcal (2) G-P(sol) polarization free energy of solvation -70.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds