Wall clock time and date at job start Thu Apr 9 2020 11:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35912 * 117.00171 * 2 1 4 4 C 1.38753 * 120.47508 * 359.97159 * 3 2 1 5 5 N 1.31806 * 120.68012 * 180.02562 * 4 3 2 6 6 C 1.31875 * 121.78537 * 359.97438 * 5 4 3 7 7 C 1.38215 * 120.88410 * 0.02562 * 6 5 4 8 8 C 1.38576 * 119.22506 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.81144 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.46781 * 264.99727 * 9 8 7 11 11 C 1.53003 * 109.46950 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47043 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00036 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99809 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00220 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99955 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.47060 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46707 * 119.99820 * 16 14 12 19 19 H 1.48497 * 109.47305 * 239.99472 * 16 14 12 20 20 H 1.08997 * 109.47136 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47257 * 300.00490 * 1 2 3 22 22 H 1.09003 * 109.46779 * 60.00695 * 1 2 3 23 23 H 1.08002 * 119.65515 * 0.04521 * 4 3 2 24 24 H 1.08000 * 119.55788 * 180.28032 * 6 5 4 25 25 H 1.07998 * 120.38321 * 179.97438 * 7 6 5 26 26 H 1.08994 * 109.47105 * 24.99556 * 9 8 7 27 27 H 1.08996 * 109.46900 * 144.99969 * 9 8 7 28 28 H 1.08994 * 109.47161 * 299.99795 * 10 9 8 29 29 H 1.08996 * 109.47206 * 60.00429 * 10 9 8 30 30 H 1.09006 * 109.46623 * 300.00067 * 11 10 9 31 31 H 1.09004 * 109.47366 * 59.99635 * 11 10 9 32 32 H 0.97009 * 120.00396 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.3001 2.3809 -0.0006 5 7 1.8943 3.5574 -0.0011 6 6 3.2081 3.6721 -0.0006 7 6 4.0180 2.5521 0.0000 8 6 3.4345 1.2952 0.0006 9 6 4.2834 0.0500 0.0018 10 6 4.4674 -0.4431 -1.4348 11 6 5.3288 -1.7076 -1.4335 12 6 5.5105 -2.1930 -2.8486 13 1 5.0567 -1.6538 -3.6669 14 6 6.2553 -3.3261 -3.0984 15 7 6.8076 -3.9830 -2.1018 16 14 6.4801 -3.9282 -4.8524 17 1 5.7641 -3.0194 -5.7832 18 1 7.9263 -3.9421 -5.1894 19 1 5.9292 -5.3014 -4.9788 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 0.2214 2.3269 -0.0003 24 1 3.6571 4.6543 0.0036 25 1 5.0930 2.6554 0.0000 26 1 5.2574 0.2748 0.4363 27 1 3.7923 -0.7239 0.5916 28 1 3.4934 -0.6679 -1.8693 29 1 4.9586 0.3309 -2.0245 30 1 6.3029 -1.4832 -0.9988 31 1 4.8373 -2.4815 -0.8438 32 1 7.3319 -4.7800 -2.2776 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066221.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:34 Heat of formation + Delta-G solvation = -24.882071 kcal Electronic energy + Delta-G solvation = -14426.071966 eV Core-core repulsion = 11965.358228 eV Total energy + Delta-G solvation = -2460.713739 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.60200 -37.96397 -35.19011 -32.97603 -30.98416 -30.28254 -27.54925 -27.12964 -23.98366 -22.79243 -21.66353 -20.07511 -17.90381 -16.94250 -16.42763 -15.88537 -15.75652 -14.45827 -14.34284 -14.14917 -13.78937 -13.57801 -12.85258 -12.28644 -12.21724 -11.90361 -11.82662 -11.44872 -11.16847 -10.75297 -10.71619 -10.50317 -9.64320 -9.63139 -9.33571 -9.16401 -8.92099 -8.32215 -8.27717 -5.97268 -3.99148 1.20953 1.40306 3.26004 3.32448 3.39758 3.44430 3.87608 4.48299 4.50892 4.70654 4.88214 5.00439 5.08999 5.18235 5.38533 5.42390 5.51433 5.63157 5.72839 6.01503 6.10654 6.30127 6.40290 6.64978 6.82138 6.92738 7.16506 7.30909 7.71705 7.86984 8.00729 8.03570 8.46741 9.08184 9.64660 11.14138 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037327 B = 0.005830 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.946731 B = 4801.186644 C = 5103.959317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.300 6.300 3 C 0.077 3.923 4 C 0.011 3.989 5 N -0.464 5.464 6 C 0.058 3.942 7 C -0.136 4.136 8 C -0.055 4.055 9 C -0.078 4.078 10 C -0.099 4.099 11 C 0.021 3.979 12 C -0.518 4.518 13 H 0.054 0.946 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 H 0.102 0.898 21 H 0.053 0.947 22 H 0.055 0.945 23 H 0.154 0.846 24 H 0.154 0.846 25 H 0.141 0.859 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.016 0.984 31 H 0.017 0.983 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.015 11.041 5.603 15.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.211 6.211 3 C 0.029 3.971 4 C -0.146 4.146 5 N -0.173 5.173 6 C -0.100 4.100 7 C -0.155 4.155 8 C -0.063 4.063 9 C -0.115 4.115 10 C -0.137 4.137 11 C -0.016 4.016 12 C -0.556 4.556 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.718 3.282 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 H 0.121 0.879 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.171 0.829 24 H 0.172 0.828 25 H 0.159 0.841 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.035 0.965 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.355 11.424 5.639 16.418 hybrid contribution 0.431 -1.041 -0.969 1.486 sum -9.925 10.383 4.670 15.104 Atomic orbital electron populations 1.23096 0.78587 1.04315 1.01071 1.86194 1.21019 1.25728 1.88207 1.19971 0.92830 0.85762 0.98495 1.22798 1.00202 0.87327 1.04279 1.67457 1.12356 1.26502 1.11034 1.22563 0.88931 0.98824 0.99659 1.22001 1.01719 0.91717 1.00095 1.20117 0.91000 0.97093 0.98097 1.20694 0.97642 0.92594 1.00610 1.21583 1.00600 0.99553 0.91995 1.19112 0.94350 0.91105 0.96989 1.21302 1.31343 1.09931 0.93057 0.92735 1.25021 0.95792 0.96727 0.96948 1.69976 1.34453 1.18508 1.30654 0.86559 0.77812 0.78658 0.85123 1.19780 1.21015 1.21017 0.87918 0.92802 0.92608 0.82933 0.82824 0.84116 0.91057 0.90610 0.93157 0.93498 0.96603 0.96485 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.82 101.05 0.99 1.24 16 2 O -0.30 -4.50 9.77 -19.46 -0.19 -4.69 16 3 C 0.08 1.18 6.68 -39.07 -0.26 0.92 16 4 C 0.01 0.16 10.22 -17.37 -0.18 -0.02 16 5 N -0.46 -6.70 10.35 -13.12 -0.14 -6.84 16 6 C 0.06 0.75 11.18 -17.54 -0.20 0.56 16 7 C -0.14 -1.86 9.79 -39.47 -0.39 -2.25 16 8 C -0.05 -0.87 5.18 -104.18 -0.54 -1.41 16 9 C -0.08 -1.39 5.14 -27.88 -0.14 -1.53 16 10 C -0.10 -2.13 5.14 -26.73 -0.14 -2.27 16 11 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 12 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 13 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 16 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 20 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 21 H 0.05 0.44 7.68 -51.93 -0.40 0.04 16 22 H 0.06 0.49 7.68 -51.93 -0.40 0.09 16 23 H 0.15 1.66 6.32 -52.49 -0.33 1.33 16 24 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 25 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 26 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 27 H 0.08 1.38 7.78 -51.93 -0.40 0.98 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 277.37 15.07 4.18 4.18 Total: -1.00 -32.54 277.37 -6.28 -38.83 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: -4.45 Total: -3.75 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -1.40 Total: -18.12 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.60 Total: -33.37 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.19 Total: -4.69 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.54 -6.28 -38.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066221.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.944 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds