Wall clock time and date at job start Thu Apr 9 2020 11:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47140 * 2 1 4 4 O 1.42906 * 109.46946 * 240.00446 * 2 1 3 5 5 C 1.52999 * 109.47649 * 120.00104 * 2 1 3 6 6 N 1.46494 * 109.47340 * 184.99775 * 5 2 1 7 7 C 1.38732 * 119.99701 * 180.27306 * 6 5 2 8 8 C 1.38747 * 120.30012 * 359.73150 * 7 6 5 9 9 C 1.38158 * 120.03286 * 180.02562 * 8 7 6 10 10 C 1.38902 * 120.62498 * 0.02562 * 9 8 7 11 11 C 1.36454 * 120.59507 * 359.97438 * 10 9 8 12 12 C 1.40726 * 119.94941 * 359.72604 * 11 10 9 13 13 C 1.41045 * 120.30387 * 180.26933 * 12 11 10 14 14 H 1.08008 * 119.99662 * 149.85766 * 13 12 11 15 15 C 1.39926 * 120.00552 * 329.87033 * 13 12 11 16 16 N 1.30877 * 120.00513 * 162.10141 * 15 13 12 17 17 Si 1.86801 * 119.99526 * 342.09469 * 15 13 12 18 18 H 1.48497 * 109.46961 * 95.40354 * 17 15 13 19 19 H 1.48509 * 109.46827 * 215.40093 * 17 15 13 20 20 H 1.48500 * 109.47232 * 335.39932 * 17 15 13 21 21 H 1.08999 * 109.46595 * 299.99591 * 1 2 3 22 22 H 1.08998 * 109.47046 * 59.99588 * 1 2 3 23 23 H 1.08999 * 109.47140 * 179.97438 * 1 2 3 24 24 H 0.96701 * 113.99544 * 299.99552 * 4 2 1 25 25 H 1.09003 * 109.46858 * 64.99585 * 5 2 1 26 26 H 1.09001 * 109.46803 * 305.00191 * 5 2 1 27 27 H 0.96999 * 120.00348 * 0.02562 * 6 5 2 28 28 H 1.08011 * 119.98365 * 0.02562 * 8 7 6 29 29 H 1.08001 * 119.68977 * 179.97438 * 9 8 7 30 30 H 1.08004 * 119.70351 * 179.97438 * 10 9 8 31 31 H 1.07998 * 120.01921 * 180.02562 * 11 10 9 32 32 H 0.96999 * 120.00674 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0401 -0.7212 1.2492 6 7 3.5001 -0.6179 1.3108 7 6 4.1933 -1.2045 2.3596 8 6 3.5097 -1.8858 3.3564 9 6 4.2056 -2.4675 4.3985 10 6 5.5902 -2.3779 4.4620 11 6 6.2883 -1.7141 3.4955 12 6 5.6049 -1.1178 2.4195 13 6 6.3194 -0.4347 1.4135 14 1 5.9354 -0.4044 0.4044 15 6 7.5257 0.2034 1.7225 16 7 8.3578 0.5287 0.7661 17 14 7.9484 0.5912 3.5002 18 1 8.7991 -0.4924 4.0544 19 1 8.6838 1.8798 3.5643 20 1 6.6982 0.6947 4.2950 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7210 -1.5952 -1.2330 25 1 1.7517 -1.7715 1.2055 26 1 1.6055 -0.2617 2.1369 27 1 3.9824 -0.1424 0.6164 28 1 2.4329 -1.9614 3.3175 29 1 3.6678 -2.9961 5.1717 30 1 6.1192 -2.8379 5.2837 31 1 7.3648 -1.6506 3.5539 32 1 9.1938 0.9714 0.9802 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251967649.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:37 Heat of formation + Delta-G solvation = -38.115324 kcal Electronic energy + Delta-G solvation = -14829.668893 eV Core-core repulsion = 12368.381318 eV Total energy + Delta-G solvation = -2461.287576 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.48693 -37.39700 -34.15312 -33.44577 -31.18793 -30.28600 -28.26850 -25.54078 -24.49048 -22.06436 -20.70284 -19.99830 -17.29460 -16.62600 -16.22580 -15.80927 -14.86175 -14.68109 -13.78150 -13.76043 -13.27773 -13.04014 -12.61416 -12.50046 -12.20096 -11.98957 -11.83417 -11.49536 -10.86002 -10.80189 -10.67180 -10.28042 -9.98020 -9.65483 -9.58256 -9.03725 -8.97675 -7.55281 -6.79662 -6.43571 -4.20471 2.72390 2.88476 3.20767 3.31518 3.42319 4.10493 4.22683 4.58776 4.66258 4.91979 5.16347 5.22469 5.49231 5.63459 5.65639 5.89681 5.97808 6.09590 6.21171 6.22764 6.42226 6.73238 6.94994 7.17493 7.31781 7.50789 7.71815 7.73381 7.97662 8.13698 8.27520 8.50263 8.81792 8.88343 9.00564 10.23863 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027247 B = 0.009407 C = 0.007498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.397967 B = 2975.751255 C = 3733.646796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.090 3.910 3 H 0.102 0.898 4 O -0.558 6.558 5 C 0.105 3.895 6 N -0.741 5.741 7 C 0.131 3.869 8 C -0.175 4.175 9 C -0.196 4.196 10 C -0.126 4.126 11 C -0.212 4.212 12 C 0.050 3.950 13 C -0.453 4.453 14 H 0.087 0.913 15 C 0.084 3.916 16 N -0.820 5.820 17 Si 0.910 3.090 18 H -0.273 1.273 19 H -0.295 1.295 20 H -0.246 1.246 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.373 0.627 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.403 0.597 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.821 -0.828 0.886 10.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.031 3.969 3 H 0.120 0.880 4 O -0.363 6.363 5 C -0.022 4.022 6 N -0.376 5.376 7 C 0.031 3.969 8 C -0.198 4.198 9 C -0.216 4.216 10 C -0.146 4.146 11 C -0.233 4.233 12 C 0.045 3.955 13 C -0.482 4.482 14 H 0.104 0.896 15 C -0.132 4.132 16 N -0.446 5.446 17 Si 0.737 3.263 18 H -0.199 1.199 19 H -0.223 1.223 20 H -0.169 1.169 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.220 0.780 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.240 0.760 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.509 -0.152 0.657 10.530 hybrid contribution 0.220 -0.190 0.694 0.752 sum -10.289 -0.342 1.351 10.383 Atomic orbital electron populations 1.22424 0.96070 1.02569 1.02787 1.22146 0.92798 0.97293 0.84656 0.87985 1.86625 1.77360 1.28872 1.43436 1.21775 0.83913 0.99238 0.97243 1.43943 1.03269 1.62625 1.27759 1.17871 0.90900 0.98277 0.89899 1.20101 0.97158 1.05287 0.97289 1.20136 0.93772 1.07694 0.99991 1.20162 0.94046 1.01730 0.98662 1.20507 0.97886 1.05710 0.99174 1.17391 0.89502 0.94816 0.93758 1.19098 1.03329 1.29015 0.96786 0.89552 1.26035 0.94370 0.93342 0.99483 1.69721 1.08119 1.31640 1.35122 0.86324 0.79951 0.76792 0.83214 1.19939 1.22281 1.16915 0.91430 0.91701 0.92239 0.77999 0.93414 0.92821 0.76035 0.89032 0.89214 0.89373 0.88373 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 9.53 37.16 0.35 -1.39 16 2 C 0.09 1.17 3.62 -26.73 -0.10 1.07 16 3 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 4 O -0.56 -7.94 13.29 -35.23 -0.47 -8.40 16 5 C 0.10 1.60 4.54 -4.05 -0.02 1.58 16 6 N -0.74 -14.99 5.58 -58.20 -0.32 -15.32 16 7 C 0.13 3.06 6.68 -83.29 -0.56 2.50 16 8 C -0.17 -3.78 9.30 -39.42 -0.37 -4.14 16 9 C -0.20 -4.23 10.03 -39.37 -0.40 -4.63 16 10 C -0.13 -2.88 9.97 -39.98 -0.40 -3.28 16 11 C -0.21 -5.33 7.10 -39.29 -0.28 -5.61 16 12 C 0.05 1.30 5.11 -106.63 -0.55 0.76 16 13 C -0.45 -12.38 8.91 -37.89 -0.34 -12.72 16 14 H 0.09 2.46 7.04 -52.48 -0.37 2.09 16 15 C 0.08 2.28 5.41 -17.33 -0.09 2.19 16 16 N -0.82 -22.56 13.93 55.55 0.77 -21.78 16 17 Si 0.91 21.68 24.52 -169.99 -4.17 17.51 16 18 H -0.27 -6.35 6.71 56.52 0.38 -5.97 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.25 -6.03 6.85 56.52 0.39 -5.64 16 21 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.37 4.03 9.05 45.56 0.41 4.44 16 25 H 0.05 0.70 7.94 -51.93 -0.41 0.29 16 26 H 0.05 0.80 7.95 -51.93 -0.41 0.39 16 27 H 0.40 8.62 6.79 -40.82 -0.28 8.34 16 28 H 0.09 1.73 6.73 -52.48 -0.35 1.38 16 29 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 30 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 31 H 0.10 2.47 4.75 -52.49 -0.25 2.22 16 32 H 0.28 7.07 8.30 -40.82 -0.34 6.73 16 LS Contribution 265.43 15.07 4.00 4.00 Total: -1.00 -29.46 265.43 -6.29 -35.75 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -3.37 Total: 11.91 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -2.73 Total: -23.66 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.45 Total: -37.10 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -0.47 Total: -8.40 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.17 Total: 17.51 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.46 -6.29 -35.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251967649.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.369 kcal (2) G-P(sol) polarization free energy of solvation -29.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds