Wall clock time and date at job start Thu Apr 9 2020 11:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47212 * 2 1 4 4 C 1.53005 * 109.47174 * 239.99857 * 2 1 3 5 5 N 1.46496 * 109.46757 * 59.99959 * 4 2 1 6 6 C 1.36943 * 119.99755 * 180.02562 * 5 4 2 7 7 H 1.07993 * 119.99871 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99549 * 180.02562 * 6 5 4 9 9 N 1.31625 * 119.99311 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00533 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.46939 * 89.99744 * 10 8 6 12 12 H 1.48502 * 109.47136 * 209.99961 * 10 8 6 13 13 H 1.48504 * 109.46912 * 330.00145 * 10 8 6 14 14 C 1.50706 * 109.47186 * 120.00268 * 2 1 3 15 15 C 1.38233 * 120.00109 * 89.72231 * 14 2 1 16 16 C 1.38238 * 119.99749 * 179.78525 * 15 14 2 17 17 C 1.38234 * 120.00078 * 0.44989 * 16 15 14 18 18 C 1.38238 * 120.00032 * 359.80374 * 17 16 15 19 19 C 1.38235 * 120.00123 * 359.97438 * 18 17 16 20 20 H 1.08997 * 109.46785 * 299.99904 * 1 2 3 21 21 H 1.09002 * 109.47171 * 59.99883 * 1 2 3 22 22 H 1.09004 * 109.47223 * 180.02562 * 1 2 3 23 23 H 0.96705 * 113.99611 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47197 * 180.02562 * 4 2 1 25 25 H 1.09001 * 109.47101 * 300.00440 * 4 2 1 26 26 H 0.96997 * 120.00357 * 359.97438 * 5 4 2 27 27 H 0.97001 * 119.99287 * 179.97438 * 9 8 6 28 28 H 1.08004 * 119.99934 * 0.02562 * 15 14 2 29 29 H 1.07999 * 119.99925 * 180.27297 * 16 15 14 30 30 H 1.08002 * 120.00276 * 179.83134 * 17 16 15 31 31 H 1.08000 * 120.00524 * 180.02562 * 18 17 16 32 32 H 1.07999 * 120.00181 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.5516 -0.0307 -2.4454 6 6 1.8820 -0.4989 -3.6891 7 1 2.5022 -1.3774 -3.7882 8 6 1.4197 0.1559 -4.8225 9 7 1.7377 -0.2939 -6.0180 10 14 0.3475 1.6759 -4.6511 11 1 1.2075 2.8857 -4.6062 12 1 -0.5731 1.7658 -5.8129 13 1 -0.4441 1.5845 -3.3981 14 6 2.0324 -0.7105 1.2305 15 6 2.2573 -2.0740 1.1979 16 6 2.7223 -2.7249 2.3253 17 6 2.9535 -2.0139 3.4879 18 6 2.7236 -0.6512 3.5221 19 6 2.2630 0.0006 2.3934 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 2.9704 1.4235 -0.0004 24 1 3.1300 -0.7217 -1.2490 25 1 1.6766 -1.7489 -1.2493 26 1 0.9937 0.7577 -2.3564 27 1 1.4143 0.1634 -6.8099 28 1 2.0734 -2.6301 0.2905 29 1 2.9023 -3.7895 2.2985 30 1 3.3143 -2.5228 4.3696 31 1 2.9046 -0.0955 4.4303 32 1 2.0829 1.0651 2.4201 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253114206.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:41 Heat of formation + Delta-G solvation = -12.271297 kcal Electronic energy + Delta-G solvation = -14895.836467 eV Core-core repulsion = 12435.669572 eV Total energy + Delta-G solvation = -2460.166894 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.77967 -37.23398 -34.25311 -32.32987 -30.97897 -30.77116 -28.99821 -26.17836 -23.37181 -22.59248 -21.51500 -19.92245 -17.80283 -17.40951 -16.09800 -15.09510 -14.70770 -14.53860 -14.40288 -13.78025 -13.52887 -13.16343 -12.77464 -12.51327 -12.16170 -12.08656 -11.72476 -11.41544 -11.21338 -11.08525 -10.82107 -10.51329 -10.13589 -9.68166 -9.48301 -8.89746 -8.87654 -8.68376 -7.20958 -5.75539 -3.10575 1.36350 1.43791 3.41425 3.46659 3.48560 3.81137 4.45931 4.62224 4.69797 4.96696 5.01790 5.15711 5.33453 5.42986 5.54488 5.59420 5.61926 5.74363 5.95059 6.02273 6.13687 6.15237 6.42649 6.46026 6.51767 6.54008 6.60283 6.71919 7.03156 7.91595 8.02473 8.43544 9.23709 9.95913 10.16725 11.42761 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050282 B = 0.007077 C = 0.006551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.722635 B = 3955.462053 C = 4273.380701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.160 3.840 3 O -0.551 6.551 4 C 0.137 3.863 5 N -0.748 5.748 6 C -0.245 4.245 7 H 0.089 0.911 8 C 0.005 3.995 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.276 1.276 14 C -0.105 4.105 15 C -0.109 4.109 16 C -0.122 4.122 17 C -0.126 4.126 18 C -0.126 4.126 19 C -0.105 4.105 20 H 0.055 0.945 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.376 0.624 24 H 0.029 0.971 25 H 0.036 0.964 26 H 0.366 0.634 27 H 0.259 0.741 28 H 0.130 0.870 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.736 -1.416 18.942 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.119 3.881 3 O -0.356 6.356 4 C 0.009 3.991 5 N -0.395 5.395 6 C -0.375 4.375 7 H 0.107 0.893 8 C -0.190 4.190 9 N -0.582 5.582 10 Si 0.716 3.284 11 H -0.210 1.210 12 H -0.218 1.218 13 H -0.202 1.202 14 C -0.105 4.105 15 C -0.127 4.127 16 C -0.140 4.140 17 C -0.144 4.144 18 C -0.144 4.144 19 C -0.123 4.123 20 H 0.074 0.926 21 H 0.090 0.910 22 H 0.089 0.911 23 H 0.223 0.777 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.201 0.799 27 H 0.069 0.931 28 H 0.148 0.852 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.187 -1.425 18.749 18.804 hybrid contribution -0.076 0.853 0.001 0.856 sum 0.111 -0.572 18.750 18.759 Atomic orbital electron populations 1.21679 0.91897 1.02501 1.02613 1.20305 0.95011 0.81892 0.90931 1.86500 1.26754 1.25549 1.96819 1.21296 0.96891 0.95188 0.85687 1.42629 1.61972 1.33248 1.01618 1.19053 1.26662 1.10143 0.81658 0.89335 1.24653 1.00448 0.98902 0.95028 1.69712 1.49770 1.41982 0.96767 0.86533 0.80857 0.84255 0.76794 1.21007 1.21790 1.20245 1.20619 0.99375 0.94465 0.96082 1.21275 0.98427 0.94186 0.98794 1.21151 0.99880 0.99856 0.93162 1.21133 1.00742 0.94495 0.98018 1.21116 1.00314 0.94717 0.98243 1.21028 0.98756 1.00395 0.92164 0.92575 0.90981 0.91134 0.77669 0.95342 0.94623 0.79938 0.93069 0.85199 0.86138 0.86459 0.86358 0.85548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.65 37.16 0.32 -1.77 16 2 C 0.16 2.60 0.88 -91.77 -0.08 2.52 16 3 O -0.55 -9.04 11.71 -35.23 -0.41 -9.45 16 4 C 0.14 2.68 4.68 -4.04 -0.02 2.67 16 5 N -0.75 -18.16 5.00 -59.91 -0.30 -18.46 16 6 C -0.25 -7.06 10.47 -15.06 -0.16 -7.22 16 7 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 8 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 9 N -0.93 -29.69 13.97 55.49 0.78 -28.92 16 10 Si 0.89 22.75 27.74 -169.99 -4.71 18.04 16 11 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 13 H -0.28 -6.75 6.52 56.52 0.37 -6.38 16 14 C -0.10 -1.48 4.80 -104.62 -0.50 -1.98 16 15 C -0.11 -1.46 9.14 -39.58 -0.36 -1.82 16 16 C -0.12 -1.42 10.05 -39.58 -0.40 -1.81 16 17 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 18 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 19 C -0.11 -1.34 9.35 -39.58 -0.37 -1.71 16 20 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 21 H 0.07 1.31 6.86 -51.93 -0.36 0.96 16 22 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.38 5.16 9.04 45.56 0.41 5.57 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.69 6.51 -51.93 -0.34 0.36 16 26 H 0.37 8.91 4.25 -40.82 -0.17 8.73 16 27 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 28 H 0.13 1.75 6.17 -52.48 -0.32 1.42 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 32 H 0.13 1.53 7.48 -52.49 -0.39 1.14 16 LS Contribution 268.05 15.07 4.04 4.04 Total: -1.00 -32.34 268.05 -6.37 -38.71 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -3.30 Total: 10.65 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -2.46 Total: -14.60 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.48 Total: -47.38 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -0.41 Total: -9.45 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.71 Total: 18.04 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.34 -6.37 -38.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253114206.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.441 kcal (2) G-P(sol) polarization free energy of solvation -32.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds