Wall clock time and date at job start Thu Apr 9 2020 11:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21575 * 120.00026 * 0.02562 * 13 12 2 15 15 C 1.47706 * 120.00297 * 180.02562 * 13 12 2 16 16 C 1.41505 * 126.52272 * 179.71209 * 15 13 12 17 17 C 1.35364 * 105.50166 * 179.90239 * 16 15 13 18 18 N 1.35035 * 107.23063 * 0.36050 * 17 16 15 19 19 C 1.46503 * 124.88331 * 179.76350 * 18 17 16 20 20 N 1.28471 * 110.23057 * 359.76023 * 18 17 16 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 25 25 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 26 26 H 1.07994 * 127.24509 * 0.02562 * 16 15 13 27 27 H 1.08005 * 126.38135 * 180.08817 * 17 16 15 28 28 H 1.08999 * 109.46986 * 269.97227 * 19 18 17 29 29 H 1.09000 * 109.46961 * 29.97560 * 19 18 17 30 30 H 1.09003 * 109.46725 * 149.97173 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8582 1.1615 -2.4116 15 6 2.6389 -0.7145 -3.5634 16 6 2.8207 -0.1482 -4.8474 17 6 3.2856 -1.1546 -5.6241 18 7 3.3663 -2.2556 -4.8464 19 6 3.8217 -3.5715 -5.3017 20 7 2.9865 -1.9830 -3.6498 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.9033 -0.5281 4.4375 25 1 2.2491 -1.6316 -1.1527 26 1 2.6305 0.8725 -5.1445 27 1 3.5400 -1.0902 -6.6718 28 1 2.9690 -4.1455 -5.6643 29 1 4.5451 -3.4468 -6.1075 30 1 4.2898 -4.1010 -4.4719 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218034708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:54:45 Heat of formation + Delta-G solvation = 49.051885 kcal Electronic energy + Delta-G solvation = -14860.480290 eV Core-core repulsion = 12272.120746 eV Total energy + Delta-G solvation = -2588.359544 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.47599 -38.65161 -34.92616 -33.40438 -32.28886 -30.74136 -29.74784 -27.27635 -25.11963 -23.18685 -21.33544 -20.60426 -19.32179 -17.86078 -16.70889 -16.19990 -15.81287 -15.37196 -14.31046 -14.05683 -13.86344 -13.35753 -12.98577 -12.89528 -12.70105 -12.64409 -12.12599 -11.71991 -11.20716 -10.78573 -10.72278 -10.11691 -9.70339 -9.26944 -9.17437 -9.14107 -8.93934 -8.68732 -8.04706 -6.14165 -4.16098 1.85304 2.30942 2.51655 3.29146 3.40622 3.46241 3.99535 4.02862 4.38104 4.40600 4.79426 4.87374 5.07095 5.16598 5.20607 5.53038 5.80664 5.90135 6.38969 6.44691 6.54175 6.63672 6.80318 6.93366 7.28538 7.36476 7.58937 7.97051 8.28264 8.63901 8.83909 9.01594 9.46777 10.98150 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.049023 B = 0.006644 C = 0.006078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.022829 B = 4213.385596 C = 4605.721900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.235 3.765 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.081 0.919 6 C 0.077 3.923 7 N -0.894 5.894 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.686 5.686 13 C 0.590 3.410 14 O -0.550 6.550 15 C -0.005 4.005 16 C -0.182 4.182 17 C -0.027 4.027 18 N -0.292 5.292 19 C 0.089 3.911 20 N -0.262 5.262 21 H 0.048 0.952 22 H 0.053 0.947 23 H 0.037 0.963 24 H 0.267 0.733 25 H 0.401 0.599 26 H 0.161 0.839 27 H 0.179 0.821 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.157 -4.297 -18.176 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 H 0.068 0.932 4 C -0.570 4.570 5 H 0.099 0.901 6 C -0.126 4.126 7 N -0.531 5.531 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.333 5.333 13 C 0.373 3.627 14 O -0.427 6.427 15 C -0.166 4.166 16 C -0.210 4.210 17 C -0.169 4.169 18 N -0.080 5.080 19 C -0.052 4.052 20 N -0.098 5.098 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.236 0.764 26 H 0.178 0.822 27 H 0.196 0.804 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.085 -4.571 -17.384 18.095 hybrid contribution -0.493 0.870 -0.327 1.052 sum 1.592 -3.701 -17.710 18.163 Atomic orbital electron populations 1.22452 0.99185 1.00946 0.99347 1.19160 0.90247 0.94749 0.82674 0.93177 1.21053 1.33110 1.14401 0.88486 0.90131 1.24829 0.95534 0.96739 0.95476 1.69877 1.45076 1.40152 0.97995 0.86868 0.80516 0.83647 0.77431 1.20299 1.22190 1.18553 1.46086 1.63879 1.14184 1.09179 1.16967 0.78209 0.85854 0.81713 1.90736 1.52164 1.15120 1.84712 1.22317 1.07228 0.90529 0.96544 1.21797 1.06414 1.00811 0.92013 1.22793 1.08087 0.86991 0.99075 1.45409 1.46413 1.10152 1.06055 1.22117 1.01039 0.80265 1.01766 1.73595 1.16001 1.17455 1.02727 0.93398 0.92761 0.94422 0.92352 0.76439 0.82189 0.80385 0.89937 0.88895 0.88524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 8.96 37.16 0.33 -3.46 16 2 C 0.24 5.96 2.15 -69.08 -0.15 5.81 16 3 H 0.05 1.37 6.63 -51.93 -0.34 1.03 16 4 C -0.53 -15.04 9.31 -34.44 -0.32 -15.36 16 5 H 0.08 2.40 7.98 -52.49 -0.42 1.98 16 6 C 0.08 2.24 5.45 -17.82 -0.10 2.14 16 7 N -0.89 -27.10 13.96 55.43 0.77 -26.33 16 8 Si 0.89 22.31 24.37 -169.99 -4.14 18.16 16 9 H -0.28 -6.71 6.87 56.52 0.39 -6.33 16 10 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.26 -6.53 6.53 56.52 0.37 -6.16 16 12 N -0.69 -15.39 5.07 -55.92 -0.28 -15.67 16 13 C 0.59 12.84 7.79 -12.39 -0.10 12.74 16 14 O -0.55 -13.41 16.59 5.30 0.09 -13.32 16 15 C -0.01 -0.09 7.13 -82.76 -0.59 -0.68 16 16 C -0.18 -2.68 10.81 -39.36 -0.43 -3.11 16 17 C -0.03 -0.30 11.46 -17.17 -0.20 -0.50 16 18 N -0.29 -3.52 3.70 -68.12 -0.25 -3.77 16 19 C 0.09 0.58 11.31 59.85 0.68 1.26 16 20 N -0.26 -4.26 11.67 33.42 0.39 -3.87 16 21 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 22 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.40 8.43 8.26 -40.82 -0.34 8.09 16 26 H 0.16 2.16 8.06 -52.49 -0.42 1.74 16 27 H 0.18 1.14 8.06 -52.48 -0.42 0.72 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.32 8.13 -51.93 -0.42 -0.10 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 261.50 15.07 3.94 3.94 Total: -1.00 -34.62 261.50 -3.76 -38.38 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -3.41 Total: 3.64 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -0.87 Total: -1.16 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: 0.63 Total: -49.64 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.14 Total: 18.16 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -34.62 -3.76 -38.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218034708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.437 kcal (2) G-P(sol) polarization free energy of solvation -34.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds