Wall clock time and date at job start Thu Apr 9 2020 11:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21575 * 120.00026 * 0.02562 * 13 12 2 15 15 C 1.47706 * 120.00297 * 180.02562 * 13 12 2 16 16 C 1.41505 * 126.52272 * 179.71209 * 15 13 12 17 17 C 1.35364 * 105.50166 * 179.90239 * 16 15 13 18 18 N 1.35035 * 107.23063 * 0.36050 * 17 16 15 19 19 C 1.46503 * 124.88331 * 179.76350 * 18 17 16 20 20 N 1.28471 * 110.23057 * 359.76023 * 18 17 16 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 25 25 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 26 26 H 1.07994 * 127.24509 * 0.02562 * 16 15 13 27 27 H 1.08005 * 126.38135 * 180.08817 * 17 16 15 28 28 H 1.08999 * 109.46986 * 269.97227 * 19 18 17 29 29 H 1.09000 * 109.46961 * 29.97560 * 19 18 17 30 30 H 1.09003 * 109.46725 * 149.97173 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8582 1.1615 -2.4116 15 6 2.6389 -0.7145 -3.5634 16 6 2.8207 -0.1482 -4.8474 17 6 3.2856 -1.1546 -5.6241 18 7 3.3663 -2.2556 -4.8464 19 6 3.8217 -3.5715 -5.3017 20 7 2.9865 -1.9830 -3.6498 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.9033 -0.5281 4.4375 25 1 2.2491 -1.6316 -1.1527 26 1 2.6305 0.8725 -5.1445 27 1 3.5400 -1.0902 -6.6718 28 1 2.9690 -4.1455 -5.6643 29 1 4.5451 -3.4468 -6.1075 30 1 4.2898 -4.1010 -4.4719 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218034708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:54:45 Heat of formation + Delta-G solvation = 21.720196 kcal Electronic energy + Delta-G solvation = -14861.665481 eV Core-core repulsion = 12272.120746 eV Total energy + Delta-G solvation = -2589.544735 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.53760 -40.39938 -36.87156 -34.55515 -34.21380 -32.07841 -31.35038 -28.24039 -27.23883 -24.62452 -22.38433 -22.31291 -20.98428 -19.30887 -18.31659 -17.38958 -17.30930 -17.14443 -16.09068 -15.72924 -15.03487 -14.85956 -14.66646 -14.24716 -14.07991 -13.65979 -13.50042 -13.31104 -13.18781 -12.79372 -12.15223 -11.89043 -11.64346 -11.31156 -11.08044 -10.87257 -10.25554 -10.06023 -9.82489 -8.38621 -6.45467 0.58657 1.25749 1.28520 1.36232 1.47024 1.68277 2.26919 2.43100 2.45494 2.97044 3.44234 4.03031 4.08608 4.42428 4.45001 4.50066 4.56749 4.66919 4.73317 4.80405 4.81356 4.96493 5.27886 5.38856 5.39848 5.58365 5.96470 6.12177 6.54089 6.71377 6.99494 7.16503 7.33832 8.76946 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.049023 B = 0.006644 C = 0.006078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.022829 B = 4213.385596 C = 4605.721900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.240 3.760 3 H 0.027 0.973 4 C -0.537 4.537 5 H 0.052 0.948 6 C 0.029 3.971 7 N -0.933 5.933 8 Si 0.942 3.058 9 H -0.256 1.256 10 H -0.289 1.289 11 H -0.261 1.261 12 N -0.689 5.689 13 C 0.589 3.411 14 O -0.584 6.584 15 C -0.047 4.047 16 C -0.206 4.206 17 C 0.006 3.994 18 N -0.281 5.281 19 C 0.075 3.925 20 N -0.284 5.284 21 H 0.046 0.954 22 H 0.063 0.937 23 H 0.047 0.953 24 H 0.272 0.728 25 H 0.406 0.594 26 H 0.163 0.837 27 H 0.236 0.764 28 H 0.102 0.898 29 H 0.134 0.866 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.013 -4.732 -20.778 21.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.135 3.865 3 H 0.045 0.955 4 C -0.575 4.575 5 H 0.070 0.930 6 C -0.171 4.171 7 N -0.572 5.572 8 Si 0.769 3.231 9 H -0.182 1.182 10 H -0.216 1.216 11 H -0.186 1.186 12 N -0.337 5.337 13 C 0.375 3.625 14 O -0.464 6.464 15 C -0.205 4.205 16 C -0.234 4.234 17 C -0.138 4.138 18 N -0.070 5.070 19 C -0.063 4.063 20 N -0.122 5.122 21 H 0.065 0.935 22 H 0.082 0.918 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.241 0.759 26 H 0.181 0.819 27 H 0.252 0.748 28 H 0.120 0.880 29 H 0.152 0.848 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.943 -5.039 -20.000 20.716 hybrid contribution -0.318 0.851 0.347 0.972 sum 1.626 -4.188 -19.653 20.160 Atomic orbital electron populations 1.22340 0.97430 1.01731 0.99737 1.18877 0.91552 0.93283 0.82753 0.95467 1.21212 1.32639 1.13628 0.90019 0.93008 1.25589 0.96814 0.99576 0.95073 1.69983 1.46597 1.41955 0.98676 0.85952 0.79761 0.80031 0.77404 1.18177 1.21560 1.18564 1.45957 1.64466 1.14339 1.08934 1.17448 0.77156 0.85574 0.82369 1.90689 1.53645 1.16601 1.85472 1.21866 1.10523 0.91893 0.96214 1.22031 1.07965 1.02212 0.91232 1.23517 1.04585 0.85025 1.00634 1.45993 1.43990 1.12167 1.04859 1.22648 1.02828 0.77951 1.02867 1.73511 1.16822 1.16660 1.05251 0.93512 0.91793 0.93395 0.91911 0.75866 0.81891 0.74813 0.87983 0.84757 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.18 8.96 71.98 0.65 -6.54 16 2 C 0.24 12.38 2.15 44.24 0.10 12.47 16 3 H 0.03 1.54 6.63 -2.39 -0.02 1.52 16 4 C -0.54 -31.15 9.31 25.60 0.24 -30.92 16 5 H 0.05 3.22 7.98 -2.91 -0.02 3.20 16 6 C 0.03 1.71 5.45 84.65 0.46 2.17 16 7 N -0.93 -57.56 13.96 21.45 0.30 -57.26 16 8 Si 0.94 45.96 24.37 68.60 1.67 47.63 16 9 H -0.26 -11.65 6.87 99.48 0.68 -10.97 16 10 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 11 H -0.26 -12.68 6.53 99.48 0.65 -12.03 16 12 N -0.69 -31.80 5.07 -449.10 -2.28 -34.08 16 13 C 0.59 26.26 7.79 86.75 0.68 26.94 16 14 O -0.58 -29.23 16.59 -3.95 -0.07 -29.29 16 15 C -0.05 -1.69 7.13 42.46 0.30 -1.39 16 16 C -0.21 -5.75 10.81 22.41 0.24 -5.50 16 17 C 0.01 0.10 11.46 83.54 0.96 1.06 16 18 N -0.28 -5.87 3.70 -369.44 -1.37 -7.23 16 19 C 0.08 0.67 11.31 127.77 1.44 2.11 16 20 N -0.28 -8.96 11.67 -48.18 -0.56 -9.53 16 21 H 0.05 2.17 3.27 -2.39 -0.01 2.16 16 22 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 23 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 24 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 25 H 0.41 17.69 8.26 -92.71 -0.77 16.93 16 26 H 0.16 4.27 8.06 -2.91 -0.02 4.24 16 27 H 0.24 1.44 8.06 -2.91 -0.02 1.41 16 28 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.13 0.14 8.13 -2.39 -0.02 0.12 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -77.66 261.50 3.08 -74.58 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.31 Total: 14.77 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 5.06 Total: 0.41 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -3.90 Total: -108.09 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.07 Total: -29.29 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.67 Total: 47.63 kcal Total: -77.66 3.08 -74.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218034708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.305 kcal (2) G-P(sol) polarization free energy of solvation -77.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds