Wall clock time and date at job start Thu Apr 9 2020 11:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99737 * 2 1 4 4 H 1.48492 * 109.47323 * 269.99760 * 3 2 1 5 5 H 1.48499 * 109.47188 * 30.00120 * 3 2 1 6 6 H 1.48507 * 109.46886 * 149.99843 * 3 2 1 7 7 C 1.37882 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99917 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99788 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47112 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47246 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47001 * 180.02562 * 11 10 9 13 13 C 1.38150 * 120.02169 * 265.00204 * 12 11 10 14 14 C 1.38445 * 120.04547 * 180.02562 * 13 12 11 15 15 F 1.35096 * 119.94425 * 180.02562 * 14 13 12 16 16 C 1.38484 * 120.10223 * 359.97438 * 14 13 12 17 17 C 1.38104 * 120.04727 * 0.02562 * 16 14 13 18 18 C 1.38854 * 120.02691 * 85.27751 * 12 11 10 19 19 N 1.39819 * 120.04892 * 0.02562 * 18 12 11 20 20 H 0.96996 * 120.00562 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47153 * 59.99829 * 9 7 2 22 22 H 1.09004 * 109.47186 * 299.99982 * 9 7 2 23 23 H 1.09002 * 109.46635 * 60.00075 * 10 9 7 24 24 H 1.08992 * 109.47194 * 300.00545 * 10 9 7 25 25 H 1.09001 * 109.46829 * 60.00076 * 11 10 9 26 26 H 1.08999 * 109.46950 * 300.00180 * 11 10 9 27 27 H 1.07998 * 119.97384 * 0.02562 * 13 12 11 28 28 H 1.07999 * 119.97523 * 180.02562 * 16 14 13 29 29 H 1.08002 * 120.02003 * 179.97438 * 17 16 14 30 30 H 0.96999 * 119.99907 * 180.22289 * 19 18 12 31 31 H 0.96997 * 120.00177 * 0.23302 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6364 -0.0001 11 6 5.5516 -2.6364 -0.0001 12 6 6.0540 -4.0572 -0.0009 13 6 6.3827 -4.6747 1.1904 14 6 6.8448 -5.9798 1.1902 15 9 7.1651 -6.5819 2.3564 16 6 6.9780 -6.6693 -0.0034 17 6 6.6506 -6.0558 -1.1966 18 6 6.1923 -4.7446 -1.1994 19 7 5.8662 -4.1195 -2.4067 20 1 -0.4851 0.8400 0.0004 21 1 3.8745 -0.6807 0.8905 22 1 3.8752 -0.6795 -0.8895 23 1 3.6586 -3.1500 -0.8904 24 1 3.6579 -3.1505 0.8895 25 1 5.9149 -2.1226 0.8899 26 1 5.9149 -2.1224 -0.8901 27 1 6.2791 -4.1390 2.1224 28 1 7.3383 -7.6874 -0.0011 29 1 6.7551 -6.5938 -2.1272 30 1 5.9600 -4.6015 -3.2433 31 1 5.5463 -3.2038 -2.4079 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066786.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:54:42 Heat of formation + Delta-G solvation = -63.682859 kcal Electronic energy + Delta-G solvation = -14464.262746 eV Core-core repulsion = 11851.094695 eV Total energy + Delta-G solvation = -2613.168051 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.64168 -40.48118 -36.46474 -35.12325 -34.43190 -32.23006 -29.59257 -28.39495 -25.30874 -23.45304 -22.36568 -21.59061 -18.92447 -18.38861 -18.04988 -17.67965 -16.40638 -16.32540 -15.99388 -15.64635 -15.06645 -14.84039 -14.29056 -14.19649 -13.96187 -13.63144 -13.54189 -13.10394 -12.66243 -12.41923 -12.10080 -11.77623 -11.47378 -11.33822 -11.32349 -11.20605 -10.75100 -9.79966 -8.30108 -8.27640 -6.32812 0.34936 0.49348 1.36923 1.39882 1.51803 2.37600 2.75851 3.04810 3.07374 3.50096 3.82200 3.90881 4.23212 4.29619 4.46195 4.50673 4.63526 4.89021 4.93522 5.05698 5.09965 5.13817 5.28011 5.34833 5.47464 5.56874 5.67653 5.68898 5.95994 6.30473 6.58381 6.76002 7.01410 7.31976 8.88888 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.040596 B = 0.005674 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.563599 B = 4933.653983 C = 5183.910042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.244 1.244 7 C -0.534 4.534 8 H 0.026 0.974 9 C -0.012 4.012 10 C -0.086 4.086 11 C -0.068 4.068 12 C -0.141 4.141 13 C -0.113 4.113 14 C 0.010 3.990 15 F -0.158 7.158 16 C -0.107 4.107 17 C -0.172 4.172 18 C 0.209 3.791 19 N -0.866 5.866 20 H 0.266 0.734 21 H 0.019 0.981 22 H 0.026 0.974 23 H 0.048 0.952 24 H 0.038 0.962 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.132 0.868 28 H 0.153 0.847 29 H 0.157 0.843 30 H 0.410 0.590 31 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.359 -9.328 -3.897 20.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.167 1.167 7 C -0.572 4.572 8 H 0.044 0.956 9 C -0.050 4.050 10 C -0.124 4.124 11 C -0.105 4.105 12 C -0.146 4.146 13 C -0.133 4.133 14 C -0.011 4.011 15 F -0.137 7.137 16 C -0.127 4.127 17 C -0.195 4.195 18 C 0.103 3.897 19 N -0.406 5.406 20 H 0.074 0.926 21 H 0.038 0.962 22 H 0.044 0.956 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.150 0.850 28 H 0.171 0.829 29 H 0.175 0.825 30 H 0.240 0.760 31 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 17.233 -9.254 -3.849 19.935 hybrid contribution -0.534 0.710 0.165 0.903 sum 16.699 -8.545 -3.684 19.116 Atomic orbital electron populations 1.70085 1.08499 1.28171 1.52853 1.26095 0.95624 1.03771 0.94084 0.85592 0.79485 0.77796 0.79363 1.18778 1.21314 1.16726 1.21547 0.92522 0.92861 1.50283 0.95606 1.19571 0.93496 0.95092 0.96816 1.21286 0.93836 0.96860 1.00428 1.20464 0.94714 0.91941 1.03371 1.19350 1.06003 0.97649 0.91617 1.20931 0.99595 0.93763 0.98974 1.17631 1.08714 0.92935 0.81844 1.91414 1.91442 1.83625 1.47245 1.21086 1.00178 1.01053 0.90352 1.20690 1.06230 0.93455 0.99077 1.17841 0.93058 0.92126 0.86711 1.42619 1.74858 1.17841 1.05256 0.92560 0.96225 0.95556 0.93290 0.94354 0.90669 0.90124 0.85004 0.82902 0.82516 0.76011 0.76698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.58 13.96 21.45 0.30 -60.28 16 2 C 0.00 0.03 5.47 84.66 0.46 0.49 16 3 Si 0.95 43.85 27.47 68.60 1.88 45.73 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 7 C -0.53 -31.05 9.66 25.60 0.25 -30.80 16 8 H 0.03 1.67 7.99 -2.91 -0.02 1.64 16 9 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 10 C -0.09 -3.29 5.14 30.59 0.16 -3.14 16 11 C -0.07 -1.97 4.79 29.85 0.14 -1.83 16 12 C -0.14 -3.90 5.15 -19.74 -0.10 -4.00 16 13 C -0.11 -3.17 9.65 22.30 0.22 -2.96 16 14 C 0.01 0.26 7.30 22.38 0.16 0.43 16 15 F -0.16 -4.48 17.26 44.97 0.78 -3.70 16 16 C -0.11 -2.35 10.02 22.30 0.22 -2.12 16 17 C -0.17 -3.48 9.89 22.40 0.22 -3.26 16 18 C 0.21 4.96 6.74 38.17 0.26 5.22 16 19 N -0.87 -16.75 9.00 -51.32 -0.46 -17.22 16 20 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 21 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 22 H 0.03 1.12 7.57 -2.38 -0.02 1.10 16 23 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.07 2.12 8.05 -2.39 -0.02 2.11 16 26 H 0.08 2.07 6.79 -2.39 -0.02 2.05 16 27 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 28 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 29 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 30 H 0.41 5.58 8.84 -92.71 -0.82 4.76 16 31 H 0.40 8.26 6.93 -92.71 -0.64 7.61 16 Total: -1.00 -68.21 268.43 4.24 -63.98 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -0.37 Total: 13.90 kcal Atomic # 6 Polarization: -44.52 SS G_CDS: 2.11 Total: -42.41 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -0.16 Total: -77.50 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.78 Total: -3.70 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.73 kcal Total: -68.21 4.24 -63.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066786.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.295 kcal (2) G-P(sol) polarization free energy of solvation -68.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds