Wall clock time and date at job start Thu Apr 9 2020 11:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 5 5 O 1.21283 * 119.99488 * 120.00024 * 4 2 1 6 6 N 1.34777 * 120.00290 * 300.00464 * 4 2 1 7 7 C 1.46498 * 119.99828 * 180.27728 * 6 4 2 8 8 C 1.50700 * 109.46769 * 179.72341 * 7 6 4 9 9 H 1.07997 * 120.00357 * 359.97438 * 8 7 6 10 10 C 1.37886 * 119.99789 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99999 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99952 * 359.97438 * 10 8 7 13 13 H 1.48506 * 109.47050 * 90.00071 * 12 10 8 14 14 H 1.48500 * 109.47345 * 209.99736 * 12 10 8 15 15 H 1.48498 * 109.47548 * 330.00215 * 12 10 8 16 16 N 1.46492 * 109.47126 * 239.99804 * 2 1 3 17 17 C 1.36883 * 126.39648 * 120.00177 * 16 2 1 18 18 C 1.34675 * 106.81532 * 179.97438 * 17 16 2 19 19 N 1.34122 * 108.02171 * 359.97438 * 18 17 16 20 20 C 1.30501 * 109.25616 * 359.72703 * 19 18 17 21 21 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 22 22 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 23 23 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 24 24 H 0.97001 * 119.99727 * 359.97438 * 6 4 2 25 25 H 1.09004 * 109.46963 * 299.72135 * 7 6 4 26 26 H 1.08994 * 109.47567 * 59.72287 * 7 6 4 27 27 H 0.97000 * 119.99789 * 179.97438 * 11 10 8 28 28 H 1.08002 * 126.59440 * 0.02974 * 17 16 2 29 29 H 1.07999 * 125.98658 * 179.97438 * 18 17 16 30 30 H 1.08002 * 125.65292 * 180.29450 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.7297 -1.6964 1.1193 6 7 1.7068 -0.2498 2.4546 7 6 2.2001 -0.9368 3.6508 8 6 1.7022 -0.2232 4.8812 9 1 1.0808 0.6545 4.7821 10 6 2.0400 -0.6909 6.1335 11 7 1.6059 -0.0678 7.2073 12 14 3.1142 -2.2095 6.3050 13 1 4.5423 -1.8038 6.3438 14 1 2.7677 -2.9217 7.5611 15 1 2.8869 -3.1101 5.1464 16 7 2.0184 -0.6906 -1.1961 17 6 2.8085 -0.1554 -2.1773 18 6 3.0192 -1.1298 -3.0827 19 7 2.3757 -2.2301 -2.6654 20 6 1.7791 -1.9763 -1.5329 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5137 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 1.1493 0.5390 2.5436 25 1 1.8373 -1.9647 3.6551 26 1 3.2901 -0.9363 3.6466 27 1 1.8433 -0.3971 8.0883 28 1 3.1905 0.8541 -2.2173 29 1 3.6038 -1.0408 -3.9864 30 1 1.1891 -2.6774 -0.9611 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322251616.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:55:18 Heat of formation + Delta-G solvation = 25.693590 kcal Electronic energy + Delta-G solvation = -14880.630269 eV Core-core repulsion = 12291.257833 eV Total energy + Delta-G solvation = -2589.372435 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.01376 -39.23433 -34.80435 -34.55998 -32.50851 -30.48842 -29.11240 -27.96256 -24.82912 -22.49000 -21.26785 -20.99631 -19.90053 -17.95780 -17.00891 -16.25365 -15.33154 -15.19685 -14.67752 -14.21117 -14.06479 -13.72470 -13.43765 -13.21371 -12.79565 -12.47897 -12.45310 -12.23320 -11.81209 -11.14870 -10.86745 -10.08843 -9.96750 -9.84889 -9.61972 -9.21327 -8.90043 -8.40247 -8.36112 -6.31836 -4.35506 2.14609 2.71706 2.83705 3.19588 3.26927 3.34097 3.34388 3.65974 4.24101 4.56763 4.64756 4.81373 4.90259 5.01672 5.03546 5.36551 5.37249 5.54178 5.75936 5.80242 6.37362 6.62162 6.84053 6.90876 6.95123 7.21605 7.26855 7.92212 8.22086 8.29966 8.53563 8.68314 9.27145 10.79815 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.051832 B = 0.006182 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.075334 B = 4528.314186 C = 4848.349578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.112 3.888 3 H 0.123 0.877 4 C 0.488 3.512 5 O -0.538 6.538 6 N -0.695 5.695 7 C 0.221 3.779 8 C -0.548 4.548 9 H 0.081 0.919 10 C 0.080 3.920 11 N -0.889 5.889 12 Si 0.876 3.124 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.261 1.261 16 N -0.440 5.440 17 C -0.062 4.062 18 C -0.032 4.032 19 N -0.505 5.505 20 C 0.216 3.784 21 H 0.087 0.913 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.398 0.602 25 H 0.028 0.972 26 H 0.022 0.978 27 H 0.269 0.731 28 H 0.171 0.829 29 H 0.166 0.834 30 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.952 2.856 -14.313 14.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.004 3.996 3 H 0.141 0.859 4 C 0.271 3.729 5 O -0.415 6.415 6 N -0.344 5.344 7 C 0.099 3.901 8 C -0.586 4.586 9 H 0.099 0.901 10 C -0.124 4.124 11 N -0.526 5.526 12 Si 0.702 3.298 13 H -0.198 1.198 14 H -0.207 1.207 15 H -0.185 1.185 16 N -0.123 5.123 17 C -0.194 4.194 18 C -0.179 4.179 19 N -0.223 5.223 20 C -0.067 4.067 21 H 0.106 0.894 22 H 0.093 0.907 23 H 0.090 0.910 24 H 0.232 0.768 25 H 0.046 0.954 26 H 0.040 0.960 27 H 0.079 0.921 28 H 0.188 0.812 29 H 0.184 0.816 30 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -1.513 1.464 -14.432 14.585 hybrid contribution 0.410 0.538 0.877 1.107 sum -1.103 2.002 -13.555 13.746 Atomic orbital electron populations 1.22128 0.90925 1.04339 1.04179 1.21406 0.96983 0.97726 0.83469 0.85930 1.20394 0.81904 0.85665 0.84972 1.90749 1.38080 1.26252 1.86430 1.46146 1.51376 1.31414 1.05459 1.19565 0.94936 0.93517 0.82073 1.21036 1.34276 1.14486 0.88754 0.90146 1.24780 0.95336 0.96890 0.95437 1.69867 1.44555 1.40051 0.98132 0.86832 0.81174 0.83413 0.78369 1.19796 1.20740 1.18530 1.45203 1.38347 1.11539 1.17203 1.22656 1.02869 1.01418 0.92505 1.22212 1.04639 0.89678 1.01402 1.70310 1.13149 1.27757 1.11071 1.24784 1.02593 0.84799 0.94545 0.89387 0.90734 0.90966 0.76751 0.95407 0.95982 0.92109 0.81170 0.81633 0.78564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.15 37.16 0.34 -1.15 16 2 C 0.11 1.36 3.39 -69.08 -0.23 1.13 16 3 H 0.12 1.17 8.08 -51.93 -0.42 0.75 16 4 C 0.49 8.41 7.12 -10.98 -0.08 8.33 16 5 O -0.54 -11.64 15.46 5.55 0.09 -11.56 16 6 N -0.70 -12.61 5.44 -61.47 -0.33 -12.95 16 7 C 0.22 5.12 4.50 -5.19 -0.02 5.10 16 8 C -0.55 -14.28 9.83 -34.44 -0.34 -14.62 16 9 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 10 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 11 N -0.89 -25.59 13.96 55.43 0.77 -24.82 16 12 Si 0.88 20.85 27.47 -169.99 -4.67 16.18 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 16 N -0.44 -6.10 2.40 -112.69 -0.27 -6.37 16 17 C -0.06 -0.78 11.54 -16.56 -0.19 -0.98 16 18 C -0.03 -0.44 11.87 -17.81 -0.21 -0.65 16 19 N -0.50 -8.33 11.25 -14.66 -0.16 -8.50 16 20 C 0.22 3.34 10.75 -90.37 -0.97 2.37 16 21 H 0.09 0.74 7.56 -51.93 -0.39 0.34 16 22 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.07 0.73 7.95 -51.93 -0.41 0.32 16 24 H 0.40 6.09 7.74 -40.82 -0.32 5.78 16 25 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 26 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 27 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.17 1.81 8.06 -52.49 -0.42 1.38 16 30 H 0.20 2.78 8.06 -52.49 -0.42 2.36 16 LS Contribution 264.92 15.07 3.99 3.99 Total: -1.00 -33.12 264.92 -5.97 -39.09 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -3.58 Total: 3.33 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -1.81 Total: 1.61 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 0.00 Total: -52.64 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.67 Total: 16.18 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -33.12 -5.97 -39.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322251616.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.780 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds