Wall clock time and date at job start Thu Apr 9 2020 11:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46516 * 2 1 4 4 H 1.08994 * 109.47512 * 304.90092 * 3 2 1 5 5 C 1.50708 * 109.46675 * 184.90049 * 3 2 1 6 6 H 1.08002 * 119.99789 * 245.45406 * 5 3 2 7 7 C 1.37877 * 119.99930 * 65.45756 * 5 3 2 8 8 N 1.31509 * 119.99994 * 9.46619 * 7 5 3 9 9 Si 1.86797 * 119.99708 * 189.46681 * 7 5 3 10 10 H 1.48498 * 109.47328 * 84.99554 * 9 7 5 11 11 H 1.48503 * 109.47158 * 204.99301 * 9 7 5 12 12 H 1.48497 * 109.47344 * 324.99155 * 9 7 5 13 13 N 1.46499 * 109.47244 * 64.90559 * 3 2 1 14 14 C 1.34777 * 120.00066 * 274.99694 * 13 3 2 15 15 O 1.21615 * 119.99698 * 0.02562 * 14 13 3 16 16 C 1.47093 * 120.00048 * 179.97438 * 14 13 3 17 17 C 1.32619 * 124.61917 * 179.69940 * 16 14 13 18 18 C 1.51116 * 110.76041 * 179.84743 * 17 16 14 19 19 C 1.54583 * 104.89792 * 343.80307 * 18 17 16 20 20 C 1.51113 * 124.62445 * 0.02562 * 16 14 13 21 21 H 1.08996 * 109.47370 * 299.99602 * 1 2 3 22 22 H 1.09000 * 109.47233 * 60.00062 * 1 2 3 23 23 H 1.09008 * 109.46759 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47141 * 240.00900 * 2 1 3 25 25 H 1.09000 * 109.47233 * 119.99938 * 2 1 3 26 26 H 0.96995 * 120.00135 * 180.02562 * 8 7 5 27 27 H 0.97003 * 120.00027 * 94.99516 * 13 3 2 28 28 H 1.08003 * 124.62219 * 0.02562 * 17 16 14 29 29 H 1.08995 * 110.51508 * 224.85395 * 18 17 16 30 30 H 1.08993 * 110.24795 * 102.61333 * 18 17 16 31 31 H 1.09004 * 110.98198 * 266.70948 * 19 18 17 32 32 H 1.08994 * 110.98049 * 142.91809 * 19 18 17 33 33 H 1.08999 * 110.36194 * 315.43524 * 20 16 14 34 34 H 1.08997 * 110.36795 * 77.64604 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6066 1.9811 -0.8428 5 6 3.5420 1.4443 -0.1214 6 1 4.1492 1.8092 0.6939 7 6 4.1411 0.9803 -1.2732 8 7 3.4096 0.7117 -2.3326 9 14 5.9918 0.7331 -1.3290 10 1 6.3290 -0.6063 -0.7836 11 1 6.4618 0.8279 -2.7345 12 1 6.6560 1.7812 -0.5133 13 7 1.6503 2.0982 1.2508 14 6 0.4328 2.6651 1.3638 15 8 -0.3426 2.6320 0.4274 16 6 0.0414 3.3229 2.6199 17 6 -1.1277 3.9131 2.8288 18 6 -1.1982 4.4820 4.2270 19 6 -0.0467 3.7934 4.9948 20 6 0.9193 3.4245 3.8456 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0278 -0.0005 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8310 0.3849 -3.1428 27 1 2.2686 2.1243 1.9978 28 1 -1.9223 3.9759 2.1001 29 1 -2.1568 4.2446 4.6881 30 1 -1.0462 5.5610 4.2034 31 1 -0.4003 2.9002 5.5099 32 1 0.4243 4.4844 5.6938 33 1 1.4009 2.4678 4.0475 34 1 1.6685 4.2048 3.7121 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613037937.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:54:39 Heat of formation + Delta-G solvation = -40.252429 kcal Electronic energy + Delta-G solvation = -15430.047625 eV Core-core repulsion = 12941.355899 eV Total energy + Delta-G solvation = -2488.691726 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.41579 -37.47495 -34.94059 -32.32302 -31.08228 -29.10062 -28.27734 -26.76240 -23.18617 -21.80068 -20.75244 -19.40901 -18.42145 -17.03333 -15.85708 -15.59472 -15.28721 -14.43599 -14.26431 -13.58149 -12.76881 -12.73713 -12.50930 -12.14033 -11.77863 -11.50238 -11.45470 -11.34666 -11.18490 -11.09249 -10.98601 -10.76050 -10.32549 -10.17238 -9.66917 -9.08187 -8.97169 -8.70545 -8.45794 -7.77514 -6.12729 -4.18012 1.79391 3.26151 3.32834 3.34226 4.03675 4.17712 4.41080 4.62314 4.79110 4.98398 5.20244 5.34945 5.44003 5.69365 5.73348 5.85366 5.88602 6.02518 6.18023 6.37430 6.42693 6.56263 6.64103 6.78343 7.02508 7.20453 7.35828 7.46543 7.64997 7.75171 7.88185 8.10329 8.73892 8.82581 9.20237 9.48203 10.95617 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.037716 B = 0.007155 C = 0.006423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.207241 B = 3912.381418 C = 4358.364077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 C 0.267 3.733 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.548 3.452 15 O -0.551 6.551 16 C -0.177 4.177 17 C -0.101 4.101 18 C -0.103 4.103 19 C -0.123 4.123 20 C -0.093 4.093 21 H 0.041 0.959 22 H 0.051 0.949 23 H 0.023 0.977 24 H 0.079 0.921 25 H 0.034 0.966 26 H 0.265 0.735 27 H 0.388 0.612 28 H 0.135 0.865 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.851 4.292 12.506 14.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 C 0.165 3.835 4 H 0.074 0.926 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.348 5.348 14 C 0.334 3.666 15 O -0.432 6.432 16 C -0.180 4.180 17 C -0.120 4.120 18 C -0.140 4.140 19 C -0.160 4.160 20 C -0.131 4.131 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.042 0.958 24 H 0.098 0.902 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.220 0.780 28 H 0.152 0.848 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.343 4.177 11.609 13.444 hybrid contribution 1.328 -0.203 0.192 1.357 sum -4.015 3.973 11.801 13.083 Atomic orbital electron populations 1.21848 0.98045 0.98119 1.01578 1.21847 0.92990 0.99870 1.01126 1.18806 0.94338 0.88934 0.81412 0.92590 1.21185 0.90599 1.43971 1.01785 0.92121 1.24887 0.98452 0.95175 0.94974 1.69984 1.35743 1.43788 1.02145 0.86533 0.85036 0.78704 0.77249 1.20421 1.21173 1.19928 1.46409 1.14506 1.55484 1.18409 1.17898 0.82850 0.79196 0.86654 1.90752 1.51874 1.60564 1.39959 1.22174 0.97334 1.02540 0.95962 1.23892 0.96825 0.94323 0.97006 1.21415 0.99346 1.00243 0.92978 1.22422 0.95976 1.00511 0.97120 1.21265 0.97714 1.02258 0.91816 0.93976 0.92969 0.95800 0.90243 0.94735 0.92563 0.77965 0.84763 0.90770 0.90229 0.91046 0.90868 0.90758 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.16 0.32 -2.83 16 2 C -0.12 -2.92 5.50 -26.73 -0.15 -3.07 16 3 C 0.27 6.85 2.11 -69.08 -0.15 6.70 16 4 H 0.06 1.68 7.52 -51.93 -0.39 1.29 16 5 C -0.54 -14.37 8.66 -34.44 -0.30 -14.67 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.87 5.16 -17.82 -0.09 1.78 16 8 N -0.88 -25.16 12.16 55.43 0.67 -24.49 16 9 Si 0.90 20.74 29.55 -169.99 -5.02 15.72 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.70 -15.07 5.01 -56.12 -0.28 -15.35 16 14 C 0.55 11.47 6.36 -12.67 -0.08 11.39 16 15 O -0.55 -13.45 13.90 5.26 0.07 -13.38 16 16 C -0.18 -2.86 6.09 -102.73 -0.63 -3.48 16 17 C -0.10 -1.42 10.43 -36.00 -0.38 -1.80 16 18 C -0.10 -1.06 6.80 -26.85 -0.18 -1.24 16 19 C -0.12 -1.22 7.17 -25.06 -0.18 -1.39 16 20 C -0.09 -1.17 6.02 -26.85 -0.16 -1.33 16 21 H 0.04 0.94 5.65 -51.93 -0.29 0.65 16 22 H 0.05 1.27 7.84 -51.93 -0.41 0.86 16 23 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 24 H 0.08 2.12 6.80 -51.93 -0.35 1.77 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.39 7.30 7.53 -40.82 -0.31 7.00 16 28 H 0.13 1.94 8.03 -52.48 -0.42 1.52 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.90 7.83 -51.93 -0.41 0.49 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 278.98 15.07 4.20 4.20 Total: -1.00 -30.35 278.98 -7.40 -37.76 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.08 Total: 5.46 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -1.97 Total: -9.94 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.39 Total: -39.83 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.07 Total: -13.38 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.35 -7.40 -37.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037937.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.495 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds