Wall clock time and date at job start Thu Apr 9 2020 11:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46516 * 2 1 4 4 H 1.08994 * 109.47512 * 304.90092 * 3 2 1 5 5 C 1.50708 * 109.46675 * 184.90049 * 3 2 1 6 6 H 1.08002 * 119.99789 * 245.45406 * 5 3 2 7 7 C 1.37877 * 119.99930 * 65.45756 * 5 3 2 8 8 N 1.31509 * 119.99994 * 9.46619 * 7 5 3 9 9 Si 1.86797 * 119.99708 * 189.46681 * 7 5 3 10 10 H 1.48498 * 109.47328 * 84.99554 * 9 7 5 11 11 H 1.48503 * 109.47158 * 204.99301 * 9 7 5 12 12 H 1.48497 * 109.47344 * 324.99155 * 9 7 5 13 13 N 1.46499 * 109.47244 * 64.90559 * 3 2 1 14 14 C 1.34777 * 120.00066 * 274.99694 * 13 3 2 15 15 O 1.21615 * 119.99698 * 0.02562 * 14 13 3 16 16 C 1.47093 * 120.00048 * 179.97438 * 14 13 3 17 17 C 1.32619 * 124.61917 * 179.69940 * 16 14 13 18 18 C 1.51116 * 110.76041 * 179.84743 * 17 16 14 19 19 C 1.54583 * 104.89792 * 343.80307 * 18 17 16 20 20 C 1.51113 * 124.62445 * 0.02562 * 16 14 13 21 21 H 1.08996 * 109.47370 * 299.99602 * 1 2 3 22 22 H 1.09000 * 109.47233 * 60.00062 * 1 2 3 23 23 H 1.09008 * 109.46759 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47141 * 240.00900 * 2 1 3 25 25 H 1.09000 * 109.47233 * 119.99938 * 2 1 3 26 26 H 0.96995 * 120.00135 * 180.02562 * 8 7 5 27 27 H 0.97003 * 120.00027 * 94.99516 * 13 3 2 28 28 H 1.08003 * 124.62219 * 0.02562 * 17 16 14 29 29 H 1.08995 * 110.51508 * 224.85395 * 18 17 16 30 30 H 1.08993 * 110.24795 * 102.61333 * 18 17 16 31 31 H 1.09004 * 110.98198 * 266.70948 * 19 18 17 32 32 H 1.08994 * 110.98049 * 142.91809 * 19 18 17 33 33 H 1.08999 * 110.36194 * 315.43524 * 20 16 14 34 34 H 1.08997 * 110.36795 * 77.64604 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6066 1.9811 -0.8428 5 6 3.5420 1.4443 -0.1214 6 1 4.1492 1.8092 0.6939 7 6 4.1411 0.9803 -1.2732 8 7 3.4096 0.7117 -2.3326 9 14 5.9918 0.7331 -1.3290 10 1 6.3290 -0.6063 -0.7836 11 1 6.4618 0.8279 -2.7345 12 1 6.6560 1.7812 -0.5133 13 7 1.6503 2.0982 1.2508 14 6 0.4328 2.6651 1.3638 15 8 -0.3426 2.6320 0.4274 16 6 0.0414 3.3229 2.6199 17 6 -1.1277 3.9131 2.8288 18 6 -1.1982 4.4820 4.2270 19 6 -0.0467 3.7934 4.9948 20 6 0.9193 3.4245 3.8456 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0278 -0.0005 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8310 0.3849 -3.1428 27 1 2.2686 2.1243 1.9978 28 1 -1.9223 3.9759 2.1001 29 1 -2.1568 4.2446 4.6881 30 1 -1.0462 5.5610 4.2034 31 1 -0.4003 2.9002 5.5099 32 1 0.4243 4.4844 5.6938 33 1 1.4009 2.4678 4.0475 34 1 1.6685 4.2048 3.7121 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613037937.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:54:38 Heat of formation + Delta-G solvation = -59.650063 kcal Electronic energy + Delta-G solvation = -15430.888770 eV Core-core repulsion = 12941.355899 eV Total energy + Delta-G solvation = -2489.532870 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.93500 -38.72783 -36.84905 -34.30250 -32.95610 -30.27373 -29.41954 -28.54920 -25.13982 -23.35284 -21.88421 -21.15284 -20.02723 -18.46506 -17.62288 -17.21023 -16.60047 -16.26617 -15.83206 -15.22840 -14.64393 -14.03277 -13.74493 -13.54572 -13.45570 -13.29164 -12.99706 -12.77766 -12.63191 -12.52707 -12.21239 -12.13406 -11.98789 -11.93713 -11.64409 -11.11909 -10.69272 -10.53931 -9.89116 -9.58092 -8.20671 -6.34323 0.51814 1.43762 1.45240 1.54810 2.36174 2.48390 2.71536 3.10823 3.65932 3.74126 4.21445 4.26996 4.38296 4.42871 4.50042 4.68200 4.85013 4.86558 4.94642 5.01452 5.04441 5.19398 5.22010 5.38799 5.40347 5.46268 5.51236 5.59890 5.62848 5.72631 5.93708 6.05431 6.74176 7.00514 7.31949 7.57724 8.88368 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.037716 B = 0.007155 C = 0.006423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.207241 B = 3912.381418 C = 4358.364077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.112 4.112 3 C 0.274 3.726 4 H 0.001 0.999 5 C -0.552 4.552 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.918 5.918 9 Si 0.970 3.030 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.263 1.263 13 N -0.698 5.698 14 C 0.541 3.459 15 O -0.597 6.597 16 C -0.211 4.211 17 C -0.081 4.081 18 C -0.098 4.098 19 C -0.114 4.114 20 C -0.090 4.090 21 H 0.043 0.957 22 H 0.025 0.975 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.265 0.735 27 H 0.402 0.598 28 H 0.123 0.877 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.293 4.777 15.330 16.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.171 3.829 4 H 0.019 0.981 5 C -0.590 4.590 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.188 1.188 13 N -0.346 5.346 14 C 0.331 3.669 15 O -0.481 6.481 16 C -0.214 4.214 17 C -0.101 4.101 18 C -0.135 4.135 19 C -0.151 4.151 20 C -0.127 4.127 21 H 0.062 0.938 22 H 0.044 0.956 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.237 0.763 28 H 0.141 0.859 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.777 4.673 14.482 15.949 hybrid contribution 1.040 -0.291 -0.715 1.295 sum -3.737 4.381 13.768 14.923 Atomic orbital electron populations 1.21682 0.96791 0.99377 1.00325 1.21700 0.94025 0.98976 1.00408 1.18409 0.93882 0.89113 0.81533 0.98140 1.21538 0.91228 1.43936 1.02251 0.91020 1.25806 1.03411 0.94687 0.94458 1.70137 1.37916 1.44680 1.02805 0.85397 0.78924 0.79101 0.77166 1.19421 1.21303 1.18774 1.46176 1.15367 1.55595 1.17476 1.18695 0.81873 0.78403 0.87960 1.90720 1.52969 1.62237 1.42141 1.22060 0.99445 1.04598 0.95296 1.24311 0.95233 0.91685 0.98861 1.21513 1.00859 1.01062 0.90033 1.22448 0.94914 1.01412 0.96344 1.21306 0.97853 1.02625 0.90956 0.93798 0.95614 0.93105 0.92869 0.93238 0.92561 0.76295 0.85937 0.88480 0.88277 0.90255 0.88284 0.90698 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 8.51 71.98 0.61 -5.18 16 2 C -0.11 -5.62 5.50 30.59 0.17 -5.46 16 3 C 0.27 14.59 2.11 44.25 0.09 14.68 16 4 H 0.00 0.04 7.52 -2.39 -0.02 0.02 16 5 C -0.55 -29.90 8.66 25.60 0.22 -29.67 16 6 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 7 C 0.02 0.92 5.16 84.66 0.44 1.36 16 8 N -0.92 -54.13 12.16 21.45 0.26 -53.87 16 9 Si 0.97 42.54 29.55 68.60 2.03 44.57 16 10 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 13 N -0.70 -30.59 5.01 -449.71 -2.25 -32.85 16 14 C 0.54 23.23 6.36 86.57 0.55 23.78 16 15 O -0.60 -30.53 13.90 -4.08 -0.06 -30.59 16 16 C -0.21 -6.63 6.09 -18.57 -0.11 -6.74 16 17 C -0.08 -2.15 10.43 24.66 0.26 -1.90 16 18 C -0.10 -1.63 6.80 30.52 0.21 -1.42 16 19 C -0.11 -1.78 7.17 31.67 0.23 -1.55 16 20 C -0.09 -2.03 6.02 30.52 0.18 -1.85 16 21 H 0.04 2.00 5.65 -2.39 -0.01 1.98 16 22 H 0.02 1.29 7.84 -2.39 -0.02 1.27 16 23 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 24 H 0.05 2.94 6.80 -2.39 -0.02 2.92 16 25 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 27 H 0.40 15.07 7.53 -92.71 -0.70 14.38 16 28 H 0.12 3.50 8.03 -2.91 -0.02 3.47 16 29 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.65 7.83 -2.39 -0.02 1.63 16 34 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -68.56 278.98 3.21 -65.35 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.38 Total: 21.34 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 2.85 Total: -13.95 kcal Atomic # 7 Polarization: -84.72 SS G_CDS: -1.99 Total: -86.72 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.06 Total: -30.59 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -68.56 3.21 -65.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037937.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.700 kcal (2) G-P(sol) polarization free energy of solvation -68.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds