Wall clock time and date at job start Thu Apr 9 2020 11:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32990 * 120.00189 * 2 1 4 4 C 1.47106 * 119.99888 * 179.97438 * 3 2 1 5 5 O 1.21605 * 120.00324 * 355.01950 * 4 3 2 6 6 N 1.34779 * 119.99462 * 175.29589 * 4 3 2 7 7 C 1.46922 * 120.63506 * 4.66941 * 6 4 3 8 8 C 1.53625 * 108.54342 * 126.37360 * 7 6 4 9 9 C 1.53038 * 109.24650 * 54.85467 * 8 7 6 10 10 C 1.50698 * 109.45287 * 178.50153 * 9 8 7 11 11 H 1.07996 * 119.99929 * 120.06507 * 10 9 8 12 12 C 1.37877 * 119.99652 * 300.06285 * 10 9 8 13 13 N 1.31515 * 120.00089 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46850 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47115 * 119.99741 * 14 12 10 17 17 H 1.48497 * 109.47190 * 240.00094 * 14 12 10 18 18 C 1.53043 * 109.53784 * 298.51681 * 9 8 7 19 19 C 1.46935 * 120.62651 * 184.95414 * 6 4 3 20 20 H 1.09007 * 109.46704 * 299.99894 * 1 2 3 21 21 H 1.08994 * 109.47010 * 59.99523 * 1 2 3 22 22 H 1.08997 * 109.47055 * 179.97438 * 1 2 3 23 23 H 1.08000 * 119.99991 * 180.02562 * 2 1 3 24 24 H 1.08001 * 120.00369 * 0.02562 * 3 2 1 25 25 H 1.09004 * 109.58537 * 246.20188 * 7 6 4 26 26 H 1.08997 * 109.58764 * 6.63057 * 7 6 4 27 27 H 1.09000 * 109.63010 * 294.86419 * 8 7 6 28 28 H 1.08999 * 109.43304 * 174.72702 * 8 7 6 29 29 H 1.09000 * 109.45671 * 58.53070 * 9 8 7 30 30 H 0.97000 * 119.99698 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.49653 * 301.41134 * 18 9 8 32 32 H 1.08996 * 109.50112 * 181.31493 * 18 9 8 33 33 H 1.09003 * 109.58735 * 353.37261 * 19 6 4 34 34 H 1.09000 * 109.58622 * 113.65342 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6430 1.1516 0.0006 5 8 4.2510 0.1025 0.0925 6 7 4.3169 2.3149 -0.0952 7 6 3.6001 3.5974 -0.0980 8 6 4.1954 4.4923 0.9996 9 6 5.7056 4.6164 0.7852 10 6 6.2891 5.5233 1.8380 11 1 7.0454 5.1506 2.5128 12 6 5.8572 6.8288 1.9395 13 7 4.9366 7.2827 1.1173 14 14 6.5809 7.9531 3.2439 15 1 7.5917 7.2067 4.0353 16 1 7.2266 9.1193 2.5893 17 1 5.4994 8.4270 4.1443 18 6 6.3526 3.2333 0.8883 19 6 5.7821 2.3244 -0.2049 20 1 -0.3633 0.5139 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 2.0470 -0.9353 -0.0004 24 1 1.6321 2.0871 0.0004 25 1 3.7164 4.0789 -1.0690 26 1 2.5426 3.4253 0.1025 27 1 4.0018 4.0508 1.9772 28 1 3.7384 5.4806 0.9493 29 1 5.8990 5.0350 -0.2024 30 1 4.6325 8.2010 1.1890 31 1 6.1387 2.8036 1.8669 32 1 7.4309 3.3254 0.7588 33 1 6.1649 1.3120 -0.0751 34 1 6.0727 2.7018 -1.1854 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701317908.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:55:04 Heat of formation + Delta-G solvation = -48.737720 kcal Electronic energy + Delta-G solvation = -15357.190475 eV Core-core repulsion = 12868.130799 eV Total energy + Delta-G solvation = -2489.059676 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.08448 -38.47033 -35.38896 -35.32790 -33.07357 -31.73745 -29.06635 -27.74368 -24.86697 -24.04533 -22.36057 -20.74009 -19.48940 -18.71018 -18.03129 -17.01828 -16.49090 -16.12161 -15.20749 -14.94594 -14.71210 -14.44781 -14.14849 -14.12704 -13.82643 -13.25683 -13.19457 -13.10465 -12.82151 -12.44311 -12.24189 -12.15296 -11.95113 -11.49993 -11.03385 -11.01287 -10.66586 -10.39869 -10.32067 -9.50688 -8.08512 -6.21757 0.43341 1.40287 1.43466 1.53649 2.13979 2.31808 2.44293 3.18013 3.63451 3.99964 4.15965 4.27454 4.33615 4.41283 4.49401 4.56908 4.69544 4.76800 4.85327 4.86317 4.97186 5.06036 5.17652 5.23967 5.41188 5.46361 5.53049 5.63347 5.69480 5.97857 6.12209 6.38754 6.53713 6.87473 7.18825 7.46040 8.95299 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.043228 B = 0.006460 C = 0.005940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.568189 B = 4333.063513 C = 4712.424605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.053 4.053 3 C -0.242 4.242 4 C 0.535 3.465 5 O -0.602 6.602 6 N -0.602 5.602 7 C 0.113 3.887 8 C -0.115 4.115 9 C 0.044 3.956 10 C -0.536 4.536 11 H 0.046 0.954 12 C 0.019 3.981 13 N -0.912 5.912 14 Si 0.950 3.050 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.279 1.279 18 C -0.113 4.113 19 C 0.115 3.885 20 H 0.085 0.915 21 H 0.089 0.911 22 H 0.082 0.918 23 H 0.111 0.889 24 H 0.149 0.851 25 H 0.068 0.932 26 H 0.103 0.897 27 H 0.026 0.974 28 H 0.082 0.918 29 H 0.005 0.995 30 H 0.262 0.738 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.842 -8.606 -3.259 12.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.262 4.262 4 C 0.328 3.672 5 O -0.487 6.487 6 N -0.332 5.332 7 C -0.009 4.009 8 C -0.154 4.154 9 C 0.025 3.975 10 C -0.574 4.574 11 H 0.064 0.936 12 C -0.180 4.180 13 N -0.551 5.551 14 Si 0.776 3.224 15 H -0.198 1.198 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.151 4.151 19 C -0.007 4.007 20 H 0.104 0.896 21 H 0.108 0.892 22 H 0.101 0.899 23 H 0.129 0.871 24 H 0.167 0.833 25 H 0.086 0.914 26 H 0.121 0.879 27 H 0.045 0.955 28 H 0.100 0.900 29 H 0.023 0.977 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.605 -8.943 -3.255 12.830 hybrid contribution 0.787 0.956 0.751 1.448 sum -7.817 -7.988 -2.505 11.454 Atomic orbital electron populations 1.21070 0.89089 1.04492 1.03895 1.23980 0.98249 0.97237 0.87800 1.22729 0.91254 1.01334 1.10871 1.19256 0.89913 0.82590 0.75479 1.90677 1.71515 1.32509 1.53954 1.48200 1.07525 1.06707 1.70787 1.22095 0.96772 0.82262 0.99782 1.21881 0.98661 0.99427 0.95448 1.18627 0.92575 0.90820 0.95433 1.21569 1.22036 0.96633 1.17145 0.93585 1.25627 0.95429 0.99214 0.97763 1.69948 1.30403 1.16385 1.38393 0.85636 0.78425 0.78879 0.79475 1.19803 1.20548 1.20499 1.21850 0.99750 0.96459 0.97065 1.21593 0.79638 1.00389 0.99124 0.89633 0.89250 0.89853 0.87131 0.83338 0.91382 0.87871 0.95510 0.89979 0.97676 0.92846 0.94256 0.91751 0.90378 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 10.19 71.24 0.73 -1.00 16 2 C -0.05 -1.16 9.84 24.52 0.24 -0.92 16 3 C -0.24 -6.49 8.98 23.43 0.21 -6.28 16 4 C 0.53 19.34 7.64 86.57 0.66 20.00 16 5 O -0.60 -25.40 15.65 -4.05 -0.06 -25.46 16 6 N -0.60 -22.19 2.97 -822.32 -2.44 -24.63 16 7 C 0.11 3.97 6.35 86.51 0.55 4.52 16 8 C -0.12 -5.17 5.17 30.82 0.16 -5.01 16 9 C 0.04 2.15 2.06 -11.51 -0.02 2.13 16 10 C -0.54 -29.25 8.56 25.60 0.22 -29.03 16 11 H 0.05 2.53 7.74 -2.91 -0.02 2.51 16 12 C 0.02 1.01 5.30 84.65 0.45 1.45 16 13 N -0.91 -50.28 11.31 21.45 0.24 -50.04 16 14 Si 0.95 42.92 29.54 68.60 2.03 44.95 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 18 C -0.11 -4.82 5.30 30.67 0.16 -4.66 16 19 C 0.12 4.36 6.44 86.36 0.56 4.92 16 20 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 21 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.11 2.73 7.50 -2.91 -0.02 2.71 16 24 H 0.15 3.31 5.91 -2.91 -0.02 3.30 16 25 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 26 H 0.10 2.95 5.36 -2.39 -0.01 2.94 16 27 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.08 4.07 6.03 -2.39 -0.01 4.05 16 29 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 31 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.08 2.97 7.00 -2.39 -0.02 2.95 16 34 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -63.74 277.72 4.75 -59.00 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 1.07 Total: 10.07 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 3.91 Total: -13.88 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -2.20 Total: -74.67 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.06 Total: -25.46 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -63.74 4.75 -59.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701317908.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.261 kcal (2) G-P(sol) polarization free energy of solvation -63.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds