Wall clock time and date at job start Thu Apr 9 2020 11:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46935 * 2 1 4 4 N 1.46893 * 109.46932 * 174.87389 * 3 2 1 5 5 C 1.46907 * 110.99950 * 199.75604 * 4 3 2 6 6 C 1.50700 * 109.46610 * 66.05052 * 5 4 3 7 7 H 1.08001 * 120.00681 * 359.97438 * 6 5 4 8 8 C 1.37888 * 119.99878 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99673 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00011 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47368 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.46918 * 120.00087 * 10 8 6 13 13 H 1.48502 * 109.46930 * 239.99828 * 10 8 6 14 14 C 1.46905 * 111.00057 * 75.80637 * 4 3 2 15 15 C 1.50697 * 109.46793 * 199.68330 * 14 4 3 16 16 C 1.41387 * 126.58129 * 84.66491 * 15 14 4 17 17 C 1.34511 * 106.84328 * 179.72909 * 16 15 14 18 18 O 1.34304 * 108.41996 * 0.02562 * 17 16 15 19 19 C 1.34298 * 109.47688 * 359.97438 * 18 17 16 20 20 H 1.09006 * 109.46833 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46733 * 299.98902 * 1 2 3 22 22 H 1.08990 * 109.47446 * 59.99689 * 1 2 3 23 23 H 1.09003 * 109.46733 * 240.01098 * 2 1 3 24 24 H 1.08997 * 109.47438 * 120.00726 * 2 1 3 25 25 H 1.09002 * 109.46651 * 54.87923 * 3 2 1 26 26 H 1.08996 * 109.47364 * 294.87916 * 3 2 1 27 27 H 1.08996 * 109.47127 * 186.04704 * 5 4 3 28 28 H 1.08992 * 109.47117 * 306.05180 * 5 4 3 29 29 H 0.96999 * 119.99568 * 180.02562 * 9 8 6 30 30 H 1.08999 * 109.46881 * 79.68442 * 14 4 3 31 31 H 1.08992 * 109.46790 * 319.68468 * 14 4 3 32 32 H 1.08003 * 126.57577 * 359.76443 * 16 15 14 33 33 H 1.07998 * 125.78849 * 179.97438 * 17 16 15 34 34 H 1.08001 * 125.78992 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5037 1.4444 0.1237 5 6 3.9909 2.7491 0.5914 6 6 3.5117 2.9886 2.0000 7 1 2.9056 2.2462 2.4979 8 6 3.8463 4.1561 2.6528 9 7 4.5839 5.0604 2.0464 10 14 3.2517 4.4533 4.3986 11 1 2.4442 3.2922 4.8510 12 1 4.4214 4.6238 5.2975 13 1 2.4166 5.6807 4.4348 14 6 4.1399 1.0693 -1.1462 15 6 5.5524 0.6138 -0.8850 16 6 5.9623 -0.6852 -0.5057 17 6 7.3016 -0.6516 -0.3855 18 8 7.7222 0.5918 -0.6696 19 6 6.6658 1.3634 -0.9734 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5137 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 1.6036 1.9821 0.8406 26 1 1.7535 1.9292 -0.9322 27 1 5.0806 2.7583 0.5718 28 1 3.6091 3.5345 -0.0608 29 1 4.8196 5.8815 2.5058 30 1 4.1535 1.9307 -1.8140 31 1 3.5766 0.2593 -1.6093 32 1 5.3228 -1.5403 -0.3442 33 1 7.9317 -1.4833 -0.1068 34 1 6.7037 2.4087 -1.2425 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723744770.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:55:25 Heat of formation + Delta-G solvation = -11.501134 kcal Electronic energy + Delta-G solvation = -15326.358730 eV Core-core repulsion = 12838.913754 eV Total energy + Delta-G solvation = -2487.444976 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.33589 -38.80890 -34.94950 -34.70758 -33.18389 -30.65208 -29.28379 -27.31108 -25.76148 -23.04217 -22.31417 -21.78242 -20.92175 -18.55968 -18.25832 -16.86077 -16.76040 -16.10514 -15.94343 -15.49380 -15.30985 -14.67650 -14.07789 -13.86483 -13.61646 -13.56451 -13.28420 -12.83264 -12.66060 -12.59251 -12.47758 -12.34556 -11.95766 -11.61298 -11.38093 -11.21046 -10.60833 -10.49165 -9.36690 -8.95773 -8.19923 -6.28409 0.95590 1.38734 1.39634 1.52928 1.77756 2.37521 2.40217 3.12703 3.45045 3.99259 4.08256 4.16223 4.22565 4.35436 4.54058 4.58494 4.67272 4.75976 4.90545 4.96541 5.00622 5.18573 5.20854 5.26874 5.30689 5.36150 5.46112 5.53364 5.66613 5.70224 6.09230 6.28167 6.42740 6.67780 6.88178 7.40420 8.91232 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.017466 B = 0.010056 C = 0.007062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.745800 B = 2783.797466 C = 3963.785926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C 0.060 3.940 4 N -0.538 5.538 5 C 0.209 3.791 6 C -0.519 4.519 7 H 0.059 0.941 8 C 0.001 3.999 9 N -0.933 5.933 10 Si 0.965 3.035 11 H -0.264 1.264 12 H -0.279 1.279 13 H -0.277 1.277 14 C 0.122 3.878 15 C -0.174 4.174 16 C -0.209 4.209 17 C -0.047 4.047 18 O -0.192 6.192 19 C -0.056 4.056 20 H 0.071 0.929 21 H 0.047 0.953 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.021 0.979 27 H 0.011 0.989 28 H -0.043 1.043 29 H 0.263 0.737 30 H 0.025 0.975 31 H 0.094 0.906 32 H 0.161 0.839 33 H 0.241 0.759 34 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.035 -11.455 -5.891 12.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.067 4.067 4 N -0.262 5.262 5 C 0.082 3.918 6 C -0.557 4.557 7 H 0.077 0.923 8 C -0.196 4.196 9 N -0.574 5.574 10 Si 0.790 3.210 11 H -0.188 1.188 12 H -0.205 1.205 13 H -0.203 1.203 14 C -0.006 4.006 15 C -0.176 4.176 16 C -0.228 4.228 17 C -0.113 4.113 18 O -0.088 6.088 19 C -0.124 4.124 20 H 0.090 0.910 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.040 0.960 27 H 0.029 0.971 28 H -0.025 1.025 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.112 0.888 32 H 0.178 0.822 33 H 0.257 0.743 34 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -0.549 -11.543 -5.518 12.806 hybrid contribution -0.440 1.372 0.260 1.464 sum -0.989 -10.171 -5.258 11.492 Atomic orbital electron populations 1.21702 0.94448 1.02354 1.01699 1.21446 0.96175 0.94975 1.01934 1.22091 0.87537 0.97831 0.99283 1.62029 1.05711 1.31309 1.27177 1.19381 0.94631 0.83774 0.93984 1.21483 1.31960 1.02640 0.99616 0.92258 1.25873 0.95427 0.95774 1.02561 1.70086 1.38829 1.09258 1.39203 0.85398 0.78158 0.78218 0.79257 1.18814 1.20527 1.20302 1.20414 0.90675 0.98938 0.90570 1.20536 0.95650 0.95154 1.06280 1.21893 0.95717 0.98126 1.07081 1.24731 0.95829 0.86130 1.04655 1.84019 1.36019 1.21121 1.67690 1.23988 0.84654 0.97222 1.06519 0.90975 0.93399 0.92440 0.91514 0.92500 0.92343 0.96047 0.97116 1.02496 0.92807 0.95713 0.88780 0.82176 0.74296 0.78672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.91 71.98 0.71 -2.82 16 2 C -0.11 -3.23 5.98 30.60 0.18 -3.05 16 3 C 0.06 2.36 4.79 86.31 0.41 2.77 16 4 N -0.54 -23.75 4.35 -905.39 -3.93 -27.68 16 5 C 0.21 11.33 4.55 85.56 0.39 11.72 16 6 C -0.52 -30.04 8.23 25.60 0.21 -29.83 16 7 H 0.06 3.40 7.31 -2.91 -0.02 3.38 16 8 C 0.00 0.08 5.46 84.66 0.46 0.55 16 9 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 10 Si 0.96 45.15 29.54 68.60 2.03 47.18 16 11 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 14 C 0.12 4.53 5.33 85.56 0.46 4.99 16 15 C -0.17 -6.37 5.21 -19.94 -0.10 -6.47 16 16 C -0.21 -6.46 10.87 22.19 0.24 -6.22 16 17 C -0.05 -1.29 12.09 66.97 0.81 -0.48 16 18 O -0.19 -6.47 10.65 -2.45 -0.03 -6.50 16 19 C -0.06 -2.04 11.06 66.97 0.74 -1.30 16 20 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 21 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.07 1.79 6.90 -2.39 -0.02 1.78 16 24 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.06 2.58 6.58 -2.39 -0.02 2.57 16 26 H 0.02 0.80 8.00 -2.39 -0.02 0.78 16 27 H 0.01 0.63 6.67 -2.39 -0.02 0.61 16 28 H -0.04 -2.51 8.12 -2.39 -0.02 -2.53 16 29 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 30 H 0.02 0.94 8.00 -2.39 -0.02 0.92 16 31 H 0.09 2.97 6.56 -2.39 -0.02 2.96 16 32 H 0.16 4.23 8.06 -2.91 -0.02 4.20 16 33 H 0.24 4.03 8.06 -2.91 -0.02 4.01 16 34 H 0.20 6.87 8.06 -2.91 -0.02 6.85 16 Total: -1.00 -67.23 285.79 3.93 -63.30 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 1.06 Total: 10.41 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 4.51 Total: -30.15 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -3.65 Total: -84.24 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.03 Total: -6.50 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -67.23 3.93 -63.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723744770.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.799 kcal (2) G-P(sol) polarization free energy of solvation -67.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds