Wall clock time and date at job start Thu Apr 9 2020 11:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47093 * 2 1 4 4 C 1.36820 * 119.99427 * 267.62218 * 3 2 1 5 5 H 1.08003 * 119.99357 * 147.09710 * 4 3 2 6 6 C 1.39068 * 120.00541 * 327.09379 * 4 3 2 7 7 N 1.31350 * 120.00101 * 154.36688 * 6 4 3 8 8 Si 1.86800 * 120.00128 * 334.38011 * 6 4 3 9 9 H 1.48498 * 109.47459 * 95.52698 * 8 6 4 10 10 H 1.48497 * 109.47073 * 215.53072 * 8 6 4 11 11 H 1.48502 * 109.46619 * 335.52897 * 8 6 4 12 12 C 1.34774 * 120.00245 * 87.62315 * 3 2 1 13 13 O 1.21659 * 119.99575 * 179.97438 * 12 3 2 14 14 C 1.46949 * 120.00045 * 0.02562 * 12 3 2 15 15 C 1.33123 * 119.99985 * 175.20414 * 14 12 3 16 16 C 1.50700 * 120.00183 * 358.63832 * 15 14 12 17 17 C 1.50700 * 119.99688 * 178.63291 * 15 14 12 18 18 C 1.53008 * 117.49684 * 192.62161 * 17 15 14 19 19 C 1.52996 * 60.00146 * 252.51259 * 18 17 15 20 20 H 1.09009 * 109.47123 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47398 * 300.00021 * 1 2 3 22 22 H 1.08998 * 109.47394 * 60.00659 * 1 2 3 23 23 H 1.09005 * 109.47257 * 239.99610 * 2 1 3 24 24 H 1.09000 * 109.47350 * 119.99887 * 2 1 3 25 25 H 0.96999 * 120.00070 * 180.02562 * 7 6 4 26 26 H 1.08004 * 119.99860 * 355.20075 * 14 12 3 27 27 H 1.08997 * 109.47426 * 181.32209 * 16 15 14 28 28 H 1.09001 * 109.46769 * 301.31716 * 16 15 14 29 29 H 1.09000 * 109.47117 * 61.31644 * 16 15 14 30 30 H 1.09002 * 115.55294 * 338.33049 * 17 15 14 31 31 H 1.08998 * 117.49714 * 0.02562 * 18 17 15 32 32 H 1.09001 * 117.49828 * 145.02091 * 18 17 15 33 33 H 1.08998 * 117.50070 * 252.51590 * 19 18 17 34 34 H 1.09008 * 117.51761 * 107.47502 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2926 2.0097 -1.1839 5 1 2.1336 3.0736 -1.2800 6 6 2.7762 1.2787 -2.2636 7 7 2.5750 1.7062 -3.4892 8 14 3.7118 -0.3115 -1.9710 9 1 2.7789 -1.4618 -2.0793 10 1 4.7860 -0.4479 -2.9871 11 1 4.3141 -0.2887 -0.6138 12 6 2.1973 2.0327 1.1661 13 8 2.6032 3.1796 1.1660 14 6 1.9032 1.3575 2.4377 15 6 2.1697 1.9656 3.5915 16 6 2.8013 3.3339 3.5939 17 6 1.8396 1.2858 4.8954 18 6 1.8893 2.1350 6.1672 19 6 2.9778 1.0936 5.8998 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5137 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.9120 1.1961 -4.2423 26 1 1.4707 0.3678 2.4362 27 1 2.9641 3.6572 4.6220 28 1 3.7564 3.2940 3.0701 29 1 2.1405 4.0400 3.0911 30 1 1.0802 0.5059 4.8399 31 1 2.1603 3.1854 6.0607 32 1 1.1623 1.9139 6.9487 33 1 2.9668 0.1873 6.5052 34 1 3.9653 1.4584 5.6171 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743893332.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:55:35 Heat of formation + Delta-G solvation = 18.794027 kcal Electronic energy + Delta-G solvation = -15503.758669 eV Core-core repulsion = 13017.627389 eV Total energy + Delta-G solvation = -2486.131279 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.05183 -37.67770 -35.27362 -32.67727 -32.12629 -29.67290 -27.55651 -25.18785 -23.12186 -22.75396 -22.35116 -19.41799 -17.56646 -16.87317 -16.48056 -15.62969 -15.35474 -14.39772 -13.96462 -13.55539 -13.16809 -12.93757 -12.62748 -12.36081 -12.20047 -11.82204 -11.69243 -11.50503 -11.20984 -11.06871 -10.84687 -10.70593 -10.62516 -10.37930 -10.04875 -9.78286 -9.02916 -8.40412 -8.24379 -7.72225 -6.41669 -3.85624 1.98066 3.04547 3.23945 3.29316 3.92463 4.15222 4.30168 4.47547 4.79268 4.91963 5.03157 5.11807 5.23714 5.45740 5.57797 5.59636 5.76425 5.89094 5.95942 5.96762 6.03538 6.13510 6.22493 6.29694 6.39075 6.46117 6.62491 6.80740 7.04402 7.06551 7.58424 8.32490 8.57818 9.02192 9.37558 9.88895 10.70457 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.038948 B = 0.007724 C = 0.007433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.730239 B = 3624.425778 C = 3766.253058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.086 3.914 3 N -0.457 5.457 4 C -0.311 4.311 5 H 0.107 0.893 6 C 0.059 3.941 7 N -0.857 5.857 8 Si 0.873 3.127 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.264 1.264 12 C 0.486 3.514 13 O -0.569 6.569 14 C -0.197 4.197 15 C -0.047 4.047 16 C -0.105 4.105 17 C -0.119 4.119 18 C -0.178 4.178 19 C -0.172 4.172 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.274 0.726 26 H 0.115 0.885 27 H 0.042 0.958 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.058 -5.337 14.128 15.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.038 4.038 3 N -0.177 5.177 4 C -0.438 4.438 5 H 0.125 0.875 6 C -0.147 4.147 7 N -0.493 5.493 8 Si 0.700 3.300 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.188 1.188 12 C 0.278 3.722 13 O -0.453 6.453 14 C -0.218 4.218 15 C -0.050 4.050 16 C -0.161 4.161 17 C -0.138 4.138 18 C -0.214 4.214 19 C -0.209 4.209 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.132 0.868 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.127 0.873 31 H 0.120 0.880 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.829 -4.782 13.860 14.776 hybrid contribution 0.412 -1.189 -0.152 1.267 sum -1.417 -5.970 13.708 15.019 Atomic orbital electron populations 1.22117 0.96195 1.00817 1.02828 1.21824 0.94823 0.85797 1.01324 1.43670 1.56755 1.11452 1.05830 1.19059 1.42790 0.96247 0.85737 0.87512 1.25328 0.96544 0.98164 0.94684 1.69781 1.41245 1.40108 0.98140 0.87047 0.80518 0.83264 0.79136 1.20242 1.21431 1.18793 1.18197 0.82889 0.87603 0.83538 1.90625 1.49741 1.18106 1.86870 1.22663 1.05509 1.00436 0.93220 1.21545 0.95812 0.95803 0.91815 1.20918 1.02006 0.93607 0.99581 1.21198 1.01752 1.02039 0.88773 1.23067 1.02099 0.97665 0.98599 1.22948 0.94773 1.00946 1.02200 0.92851 0.92840 0.91436 0.91206 0.91863 0.91587 0.86750 0.93951 0.90579 0.89893 0.87289 0.87987 0.88773 0.88715 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 10.21 37.15 0.38 -2.49 16 2 C 0.09 1.79 4.52 -4.04 -0.02 1.77 16 3 N -0.46 -11.45 2.25 -116.21 -0.26 -11.72 16 4 C -0.31 -8.98 9.42 -15.02 -0.14 -9.12 16 5 H 0.11 3.45 7.81 -52.48 -0.41 3.04 16 6 C 0.06 1.65 5.26 -17.45 -0.09 1.56 16 7 N -0.86 -24.87 13.95 55.50 0.77 -24.10 16 8 Si 0.87 20.84 25.07 -169.99 -4.26 16.58 16 9 H -0.27 -6.09 6.63 56.52 0.37 -5.72 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 12 C 0.49 11.80 7.52 -12.73 -0.10 11.71 16 13 O -0.57 -15.45 12.92 5.23 0.07 -15.38 16 14 C -0.20 -3.76 8.68 -37.84 -0.33 -4.09 16 15 C -0.05 -0.79 5.83 -101.13 -0.59 -1.38 16 16 C -0.11 -1.82 8.10 36.01 0.29 -1.53 16 17 C -0.12 -1.54 6.01 -91.76 -0.55 -2.09 16 18 C -0.18 -1.91 9.81 -26.73 -0.26 -2.17 16 19 C -0.17 -1.89 10.15 -26.73 -0.27 -2.16 16 20 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 21 H 0.05 0.90 8.01 -51.93 -0.42 0.48 16 22 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 23 H 0.07 1.54 3.02 -51.93 -0.16 1.38 16 24 H 0.06 1.14 6.30 -51.93 -0.33 0.81 16 25 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.11 1.89 6.34 -52.48 -0.33 1.56 16 27 H 0.04 0.59 5.60 -51.93 -0.29 0.30 16 28 H 0.08 1.48 7.36 -51.93 -0.38 1.09 16 29 H 0.08 1.60 7.10 -51.93 -0.37 1.24 16 30 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.10 1.11 6.10 -51.93 -0.32 0.80 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.10 1.11 8.14 -51.92 -0.42 0.68 16 LS Contribution 275.34 15.07 4.15 4.15 Total: -1.00 -31.31 275.34 -5.91 -37.21 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -4.70 Total: 3.26 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -1.68 Total: -10.01 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.51 Total: -35.82 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.07 Total: -15.38 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.26 Total: 16.58 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.31 -5.91 -37.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743893332.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.009 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds