Wall clock time and date at job start Thu Apr 9 2020 11:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47093 * 2 1 4 4 C 1.36820 * 119.99427 * 267.62218 * 3 2 1 5 5 H 1.08003 * 119.99357 * 147.09710 * 4 3 2 6 6 C 1.39068 * 120.00541 * 327.09379 * 4 3 2 7 7 N 1.31350 * 120.00101 * 154.36688 * 6 4 3 8 8 Si 1.86800 * 120.00128 * 334.38011 * 6 4 3 9 9 H 1.48498 * 109.47459 * 95.52698 * 8 6 4 10 10 H 1.48497 * 109.47073 * 215.53072 * 8 6 4 11 11 H 1.48502 * 109.46619 * 335.52897 * 8 6 4 12 12 C 1.34774 * 120.00245 * 87.62315 * 3 2 1 13 13 O 1.21659 * 119.99575 * 179.97438 * 12 3 2 14 14 C 1.46949 * 120.00045 * 0.02562 * 12 3 2 15 15 C 1.33123 * 119.99985 * 175.20414 * 14 12 3 16 16 C 1.50700 * 120.00183 * 358.63832 * 15 14 12 17 17 C 1.50700 * 119.99688 * 178.63291 * 15 14 12 18 18 C 1.53008 * 117.49684 * 192.62161 * 17 15 14 19 19 C 1.52996 * 60.00146 * 252.51259 * 18 17 15 20 20 H 1.09009 * 109.47123 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47398 * 300.00021 * 1 2 3 22 22 H 1.08998 * 109.47394 * 60.00659 * 1 2 3 23 23 H 1.09005 * 109.47257 * 239.99610 * 2 1 3 24 24 H 1.09000 * 109.47350 * 119.99887 * 2 1 3 25 25 H 0.96999 * 120.00070 * 180.02562 * 7 6 4 26 26 H 1.08004 * 119.99860 * 355.20075 * 14 12 3 27 27 H 1.08997 * 109.47426 * 181.32209 * 16 15 14 28 28 H 1.09001 * 109.46769 * 301.31716 * 16 15 14 29 29 H 1.09000 * 109.47117 * 61.31644 * 16 15 14 30 30 H 1.09002 * 115.55294 * 338.33049 * 17 15 14 31 31 H 1.08998 * 117.49714 * 0.02562 * 18 17 15 32 32 H 1.09001 * 117.49828 * 145.02091 * 18 17 15 33 33 H 1.08998 * 117.50070 * 252.51590 * 19 18 17 34 34 H 1.09008 * 117.51761 * 107.47502 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2926 2.0097 -1.1839 5 1 2.1336 3.0736 -1.2800 6 6 2.7762 1.2787 -2.2636 7 7 2.5750 1.7062 -3.4892 8 14 3.7118 -0.3115 -1.9710 9 1 2.7789 -1.4618 -2.0793 10 1 4.7860 -0.4479 -2.9871 11 1 4.3141 -0.2887 -0.6138 12 6 2.1973 2.0327 1.1661 13 8 2.6032 3.1796 1.1660 14 6 1.9032 1.3575 2.4377 15 6 2.1697 1.9656 3.5915 16 6 2.8013 3.3339 3.5939 17 6 1.8396 1.2858 4.8954 18 6 1.8893 2.1350 6.1672 19 6 2.9778 1.0936 5.8998 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5137 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.9120 1.1961 -4.2423 26 1 1.4707 0.3678 2.4362 27 1 2.9641 3.6572 4.6220 28 1 3.7564 3.2940 3.0701 29 1 2.1405 4.0400 3.0911 30 1 1.0802 0.5059 4.8399 31 1 2.1603 3.1854 6.0607 32 1 1.1623 1.9139 6.9487 33 1 2.9668 0.1873 6.5052 34 1 3.9653 1.4584 5.6171 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743893332.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:55:35 Heat of formation + Delta-G solvation = -1.234655 kcal Electronic energy + Delta-G solvation = -15504.627177 eV Core-core repulsion = 13017.627389 eV Total energy + Delta-G solvation = -2486.999788 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.79475 -38.85437 -37.10431 -34.43875 -33.84530 -31.35191 -29.15176 -26.99061 -24.64629 -24.26188 -23.16597 -21.01203 -18.99348 -18.85756 -18.16296 -17.34169 -16.64574 -15.95454 -15.58697 -15.18448 -14.85763 -14.60909 -14.18852 -14.02728 -13.75341 -13.47350 -13.06505 -12.84638 -12.71672 -12.57728 -12.31772 -12.08009 -11.93139 -11.76386 -11.57621 -11.26951 -11.00707 -10.12673 -9.88785 -9.62453 -8.55742 -6.06018 0.51625 1.16431 1.31681 1.42250 2.14856 2.40571 2.75502 3.02973 3.11140 3.67537 3.95542 3.99955 4.04739 4.20534 4.21857 4.35917 4.41854 4.47251 4.70534 4.84761 4.88318 4.92341 4.97143 5.05082 5.17406 5.20666 5.31761 5.35324 5.50444 5.62633 5.72878 6.03793 6.59094 6.95918 7.34198 7.94071 8.62051 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.038948 B = 0.007724 C = 0.007433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.730239 B = 3624.425778 C = 3766.253058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.078 3.922 3 N -0.472 5.472 4 C -0.335 4.335 5 H 0.044 0.956 6 C 0.013 3.987 7 N -0.903 5.903 8 Si 0.946 3.054 9 H -0.237 1.237 10 H -0.286 1.286 11 H -0.264 1.264 12 C 0.477 3.523 13 O -0.616 6.616 14 C -0.224 4.224 15 C -0.018 4.018 16 C -0.106 4.106 17 C -0.141 4.141 18 C -0.166 4.166 19 C -0.160 4.160 20 H 0.096 0.904 21 H 0.062 0.938 22 H 0.035 0.965 23 H 0.059 0.941 24 H 0.100 0.900 25 H 0.281 0.719 26 H 0.148 0.852 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.130 0.870 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.304 -8.630 17.392 19.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.044 4.044 3 N -0.192 5.192 4 C -0.463 4.463 5 H 0.062 0.938 6 C -0.189 4.189 7 N -0.540 5.540 8 Si 0.770 3.230 9 H -0.162 1.162 10 H -0.213 1.213 11 H -0.188 1.188 12 C 0.271 3.729 13 O -0.503 6.503 14 C -0.245 4.245 15 C -0.021 4.021 16 C -0.162 4.162 17 C -0.158 4.158 18 C -0.203 4.203 19 C -0.196 4.196 20 H 0.115 0.885 21 H 0.081 0.919 22 H 0.055 0.945 23 H 0.077 0.923 24 H 0.118 0.882 25 H 0.091 0.909 26 H 0.166 0.834 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.148 0.852 31 H 0.116 0.884 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.102 -8.099 17.131 19.065 hybrid contribution 0.478 0.025 -1.033 1.138 sum -1.624 -8.074 16.099 18.083 Atomic orbital electron populations 1.22060 0.94100 1.03247 1.01785 1.22100 0.96678 0.83217 1.02422 1.43784 1.57578 1.13196 1.04642 1.18625 1.45123 0.94201 0.88312 0.93843 1.26095 0.96499 1.02576 0.93779 1.69880 1.42379 1.42548 0.99240 0.85890 0.79103 0.79375 0.78652 1.16172 1.21315 1.18817 1.19191 0.81326 0.87162 0.85206 1.90595 1.51505 1.20338 1.87878 1.22488 1.09114 1.02099 0.90798 1.21967 0.91910 0.94661 0.93513 1.20867 1.00162 0.94101 1.01114 1.21265 1.03985 1.03515 0.87083 1.23197 1.02358 0.97297 0.97403 1.23068 0.93838 1.02087 1.00654 0.88535 0.91906 0.94530 0.92279 0.88217 0.90937 0.83438 0.90253 0.93181 0.92530 0.85184 0.88447 0.86174 0.86093 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 10.21 71.98 0.73 -4.42 16 2 C 0.08 3.08 4.52 86.38 0.39 3.47 16 3 N -0.47 -24.19 2.25 -639.81 -1.44 -25.63 16 4 C -0.33 -20.52 9.42 84.11 0.79 -19.73 16 5 H 0.04 3.12 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.76 5.26 84.96 0.45 1.21 16 7 N -0.90 -54.76 13.95 21.68 0.30 -54.46 16 8 Si 0.95 43.08 25.07 68.60 1.72 44.80 16 9 H -0.24 -9.32 6.63 99.48 0.66 -8.66 16 10 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 12 C 0.48 23.83 7.52 86.53 0.65 24.48 16 13 O -0.62 -35.58 12.92 -4.22 -0.05 -35.64 16 14 C -0.22 -8.21 8.68 23.40 0.20 -8.00 16 15 C -0.02 -0.57 5.83 -17.60 -0.10 -0.68 16 16 C -0.11 -3.68 8.10 71.24 0.58 -3.10 16 17 C -0.14 -3.02 6.01 -11.54 -0.07 -3.09 16 18 C -0.17 -2.79 9.81 30.60 0.30 -2.49 16 19 C -0.16 -2.75 10.15 30.59 0.31 -2.44 16 20 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 21 H 0.06 1.97 8.01 -2.39 -0.02 1.95 16 22 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 23 H 0.06 2.45 3.02 -2.38 -0.01 2.44 16 24 H 0.10 3.19 6.30 -2.39 -0.02 3.18 16 25 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 26 H 0.15 4.33 6.34 -2.91 -0.02 4.31 16 27 H 0.08 2.09 5.60 -2.39 -0.01 2.08 16 28 H 0.05 2.00 7.36 -2.39 -0.02 1.98 16 29 H 0.06 2.27 7.10 -2.39 -0.02 2.26 16 30 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.10 1.74 6.10 -2.39 -0.01 1.73 16 32 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -75.08 275.34 5.81 -69.27 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 1.04 Total: 16.44 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 4.23 Total: -14.78 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -1.13 Total: -80.09 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.05 Total: -35.64 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.72 Total: 44.80 kcal Total: -75.08 5.81 -69.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743893332.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.037 kcal (2) G-P(sol) polarization free energy of solvation -75.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds