Wall clock time and date at job start Thu Apr 9 2020 11:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.32997 * 119.99734 * 2 1 4 4 C 1.47100 * 120.00162 * 353.10045 * 3 2 1 5 5 O 1.21614 * 119.99872 * 353.76957 * 4 3 2 6 6 N 1.34776 * 119.99675 * 173.77522 * 4 3 2 7 7 C 1.46503 * 119.99906 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.47014 * 324.99782 * 7 6 4 9 9 C 1.53003 * 109.47514 * 84.99528 * 7 6 4 10 10 C 1.50696 * 109.47306 * 204.99554 * 7 6 4 11 11 H 1.08001 * 120.00025 * 0.02562 * 10 7 6 12 12 C 1.37877 * 120.00083 * 179.97438 * 10 7 6 13 13 N 1.31520 * 119.99886 * 180.02562 * 12 10 7 14 14 Si 1.86805 * 120.00174 * 0.02562 * 12 10 7 15 15 H 1.48498 * 109.46823 * 89.99422 * 14 12 10 16 16 H 1.48502 * 109.47197 * 209.99693 * 14 12 10 17 17 H 1.48501 * 109.46750 * 329.99631 * 14 12 10 18 18 C 1.50694 * 119.99841 * 179.97438 * 2 1 3 19 19 C 1.52996 * 117.50276 * 8.74497 * 18 2 1 20 20 C 1.53002 * 117.49902 * 300.08239 * 18 2 1 21 21 H 1.08999 * 109.46932 * 84.53843 * 1 2 3 22 22 H 1.09000 * 109.47069 * 204.53966 * 1 2 3 23 23 H 1.09008 * 109.46929 * 324.53957 * 1 2 3 24 24 H 1.08003 * 119.99933 * 173.10500 * 3 2 1 25 25 H 0.96997 * 120.00775 * 359.97438 * 6 4 3 26 26 H 1.09004 * 109.46772 * 60.00106 * 9 7 6 27 27 H 1.09003 * 109.46857 * 300.00408 * 9 7 6 28 28 H 1.08993 * 109.47304 * 180.02562 * 9 7 6 29 29 H 0.97002 * 119.99413 * 180.02562 * 13 12 10 30 30 H 1.09001 * 115.55001 * 154.41782 * 18 2 1 31 31 H 1.09009 * 117.49562 * 0.02562 * 19 18 2 32 32 H 1.08992 * 117.50350 * 145.01992 * 19 18 2 33 33 H 1.08999 * 117.50202 * 214.97939 * 20 18 2 34 34 H 1.09007 * 117.49963 * 359.97438 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4445 2.4211 -0.1530 5 8 0.2522 2.4135 -0.3927 6 7 2.0993 3.5924 -0.0278 7 6 1.3747 4.8566 -0.1796 8 1 0.5982 4.7417 -0.9360 9 6 0.7333 5.2405 1.1554 10 6 2.3343 5.9378 -0.6051 11 1 3.3795 5.7063 -0.7485 12 6 1.8780 7.2222 -0.8123 13 7 2.7155 8.1657 -1.1841 14 14 0.0701 7.6225 -0.5650 15 1 -0.1574 8.0344 0.8435 16 1 -0.3206 8.7299 -1.4739 17 1 -0.7487 6.4212 -0.8679 18 6 2.2605 -1.3051 0.0006 19 6 1.4522 -2.5876 -0.2052 20 6 2.0246 -2.2565 1.1754 21 1 -0.3633 0.0978 -1.0230 22 1 -0.3633 -0.9348 0.4268 23 1 -0.3633 0.8371 0.5962 24 1 3.2462 1.1552 0.1123 25 1 3.0502 3.5985 0.1636 26 1 1.5098 5.3554 1.9117 27 1 0.0391 4.4584 1.4631 28 1 0.1938 6.1807 1.0423 29 1 2.3944 9.0694 -1.3295 30 1 3.2637 -1.2689 -0.4241 31 1 0.3753 -2.4874 -0.3414 32 1 1.9236 -3.3954 -0.7648 33 1 2.8724 -2.8466 1.5233 34 1 1.3247 -1.9382 1.9481 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751392931.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:55:48 Heat of formation + Delta-G solvation = 1.857503 kcal Electronic energy + Delta-G solvation = -15009.082460 eV Core-core repulsion = 12522.216757 eV Total energy + Delta-G solvation = -2486.865702 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.33963 -37.85837 -35.08831 -32.87986 -32.34723 -30.01726 -27.34572 -25.16660 -24.06199 -22.53714 -21.21094 -19.59569 -18.46619 -16.99603 -16.30925 -15.86888 -15.21117 -14.63214 -14.23059 -13.98589 -13.08540 -13.01181 -12.84130 -12.62415 -12.16651 -11.92501 -11.72795 -11.53045 -11.25946 -11.18656 -10.95925 -10.77447 -10.56415 -10.15742 -9.64023 -9.19586 -8.90092 -8.79319 -8.70478 -8.00927 -6.18244 -4.20321 1.61108 3.25434 3.37223 3.42308 3.66628 3.95577 4.04147 4.34301 4.64364 4.71843 4.80163 5.00557 5.16794 5.23143 5.42623 5.59277 5.66144 5.76860 5.91415 5.92946 6.04554 6.27912 6.36320 6.40630 6.59675 6.67864 6.73738 6.91924 7.26169 7.37193 7.57409 8.22094 8.60958 8.79895 9.03981 9.43251 10.94073 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.061791 B = 0.005630 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.031652 B = 4972.335003 C = 5197.922755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.020 4.020 3 C -0.213 4.213 4 C 0.533 3.467 5 O -0.557 6.557 6 N -0.698 5.698 7 C 0.236 3.764 8 H 0.048 0.952 9 C -0.160 4.160 10 C -0.534 4.534 11 H 0.080 0.920 12 C 0.077 3.923 13 N -0.894 5.894 14 Si 0.886 3.114 15 H -0.276 1.276 16 H -0.294 1.294 17 H -0.262 1.262 18 C -0.127 4.127 19 C -0.174 4.174 20 C -0.169 4.169 21 H 0.076 0.924 22 H 0.048 0.952 23 H 0.092 0.908 24 H 0.122 0.878 25 H 0.395 0.605 26 H 0.052 0.948 27 H 0.035 0.965 28 H 0.046 0.954 29 H 0.267 0.733 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.129 -17.676 4.138 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.022 4.022 3 C -0.234 4.234 4 C 0.321 3.679 5 O -0.439 6.439 6 N -0.345 5.345 7 C 0.132 3.868 8 H 0.066 0.934 9 C -0.218 4.218 10 C -0.572 4.572 11 H 0.098 0.902 12 C -0.126 4.126 13 N -0.531 5.531 14 Si 0.716 3.284 15 H -0.203 1.203 16 H -0.222 1.222 17 H -0.187 1.187 18 C -0.145 4.145 19 C -0.211 4.211 20 C -0.206 4.206 21 H 0.095 0.905 22 H 0.067 0.933 23 H 0.110 0.890 24 H 0.140 0.860 25 H 0.228 0.772 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.132 0.868 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.938 -17.428 3.912 17.967 hybrid contribution -0.181 0.474 0.224 0.555 sum -2.119 -16.954 4.136 17.580 Atomic orbital electron populations 1.21116 0.90968 1.01900 1.03644 1.21662 0.96049 0.92102 0.92407 1.22483 1.00180 0.92517 1.08228 1.18473 0.87112 0.84430 0.77858 1.90694 1.15233 1.87783 1.50174 1.46106 1.12556 1.06033 1.69806 1.19083 0.93204 0.81142 0.93364 0.93398 1.22441 0.99774 0.99332 1.00261 1.21065 0.96221 0.92421 1.47470 0.90242 1.24840 0.97772 0.95930 0.94061 1.69878 1.34870 1.02169 1.46177 0.86860 0.85782 0.78237 0.77503 1.20334 1.22190 1.18667 1.21257 1.00047 0.88913 1.04316 1.23059 1.00536 0.97881 0.99616 1.22979 1.03617 1.02292 0.91739 0.90500 0.93277 0.88988 0.85997 0.77172 0.92878 0.94587 0.93537 0.92333 0.86806 0.88058 0.88497 0.88440 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 7.91 36.01 0.28 -1.41 16 2 C -0.02 -0.28 5.81 -101.17 -0.59 -0.86 16 3 C -0.21 -3.25 9.67 -37.81 -0.37 -3.61 16 4 C 0.53 10.49 7.58 -12.67 -0.10 10.39 16 5 O -0.56 -12.49 12.94 5.27 0.07 -12.42 16 6 N -0.70 -14.45 5.07 -56.12 -0.28 -14.73 16 7 C 0.24 5.78 2.15 -69.08 -0.15 5.63 16 8 H 0.05 1.29 6.63 -51.93 -0.34 0.95 16 9 C -0.16 -3.66 8.96 37.16 0.33 -3.33 16 10 C -0.53 -14.73 9.31 -34.44 -0.32 -15.05 16 11 H 0.08 2.30 7.98 -52.49 -0.42 1.88 16 12 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 13 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 14 Si 0.89 22.10 24.37 -169.99 -4.14 17.96 16 15 H -0.28 -6.66 6.87 56.52 0.39 -6.27 16 16 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 17 H -0.26 -6.50 6.53 56.52 0.37 -6.13 16 18 C -0.13 -1.33 6.00 -91.78 -0.55 -1.88 16 19 C -0.17 -1.53 9.77 -26.69 -0.26 -1.79 16 20 C -0.17 -1.48 10.10 -26.69 -0.27 -1.75 16 21 H 0.08 1.15 8.05 -51.93 -0.42 0.73 16 22 H 0.05 0.56 6.31 -51.93 -0.33 0.23 16 23 H 0.09 1.53 6.12 -51.92 -0.32 1.22 16 24 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 25 H 0.39 7.24 8.52 -40.82 -0.35 6.90 16 26 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 29 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.10 0.90 6.42 -51.92 -0.33 0.56 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 278.08 15.07 4.19 4.19 Total: -1.00 -31.16 278.08 -6.29 -37.45 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -4.82 Total: 5.14 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -2.08 Total: -11.56 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.49 Total: -40.77 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.07 Total: -12.42 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.14 Total: 17.96 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.16 -6.29 -37.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751392931.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.310 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds